Wall clock time and date at job start Tue Mar 31 2020 15:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38131 * 126.29734 * 2 1 4 4 C 1.47286 * 126.42576 * 359.97438 * 3 2 1 5 5 O 1.21533 * 119.99998 * 0.02562 * 4 3 2 6 6 O 1.34749 * 120.00327 * 179.72370 * 4 3 2 7 7 C 1.45196 * 117.00462 * 180.27192 * 6 4 3 8 8 H 1.09003 * 109.46716 * 30.00449 * 7 6 4 9 9 C 1.52998 * 109.47567 * 270.00604 * 7 6 4 10 10 C 1.52999 * 109.47043 * 150.00122 * 7 6 4 11 11 C 1.50703 * 109.47300 * 295.00434 * 10 7 6 12 12 C 1.38238 * 119.99617 * 269.72589 * 11 10 7 13 13 C 1.38245 * 119.99112 * 179.76565 * 12 11 10 14 14 C 1.38231 * 120.00290 * 0.50720 * 13 12 11 15 15 C 1.38233 * 119.99804 * 359.74840 * 14 13 12 16 16 C 1.38231 * 119.99924 * 89.99874 * 11 10 7 17 17 C 1.41343 * 107.14857 * 180.24216 * 3 2 1 18 18 N 1.30434 * 108.01093 * 359.58886 * 17 3 2 19 19 N 1.34222 * 126.29620 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.74542 * 359.97309 * 19 2 1 21 21 C 1.50692 * 109.47346 * 89.99111 * 20 19 2 22 22 H 1.07993 * 120.00381 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99874 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47266 * 90.00521 * 25 23 21 27 27 H 1.48501 * 109.47128 * 210.00368 * 25 23 21 28 28 H 1.48499 * 109.47079 * 330.00463 * 25 23 21 29 29 H 1.08996 * 109.47173 * 89.97500 * 1 2 3 30 30 H 1.08998 * 109.47292 * 209.97845 * 1 2 3 31 31 H 1.09001 * 109.46953 * 329.97858 * 1 2 3 32 32 H 1.09003 * 109.46976 * 299.99686 * 9 7 6 33 33 H 1.09000 * 109.47289 * 59.99318 * 9 7 6 34 34 H 1.08999 * 109.47363 * 180.02562 * 9 7 6 35 35 H 1.09001 * 109.47454 * 55.00427 * 10 7 6 36 36 H 1.09005 * 109.46952 * 175.00489 * 10 7 6 37 37 H 1.07995 * 120.00550 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.99053 * 180.23142 * 13 12 11 39 39 H 1.07998 * 120.00042 * 179.72261 * 14 13 12 40 40 H 1.08003 * 119.99938 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.00128 * 0.02562 * 16 11 10 42 42 H 1.07995 * 125.99376 * 179.75586 * 17 3 2 43 43 H 1.08999 * 109.47360 * 209.99930 * 20 19 2 44 44 H 1.09005 * 109.46438 * 329.99188 * 20 19 2 45 45 H 0.96998 * 120.00270 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7017 2.7873 -0.0006 6 8 2.8014 3.5097 0.0052 7 6 2.2982 4.8716 0.0104 8 1 1.3367 4.9017 0.5230 9 6 2.1234 5.3564 -1.4302 10 6 3.2922 5.7798 0.7371 11 6 3.3718 5.3785 2.1875 12 6 2.5261 5.9608 3.1131 13 6 2.5958 5.5891 4.4428 14 6 3.5182 4.6428 4.8485 15 6 4.3674 4.0645 3.9237 16 6 4.2942 4.4322 2.5932 17 6 3.6599 0.6496 -0.0057 18 7 3.6340 -0.6544 0.0000 19 7 2.3015 -1.0818 0.0005 20 6 1.8498 -2.4754 0.0017 21 6 1.6942 -2.9542 -1.4187 22 1 1.9105 -2.2874 -2.2401 23 6 1.2766 -4.2441 -1.6695 24 7 1.0136 -5.0564 -0.6691 25 14 1.0843 -4.8380 -3.4301 26 1 2.3653 -5.4267 -3.8966 27 1 0.0153 -5.8669 -3.4915 28 1 0.7195 -3.6924 -4.3018 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 3.0849 5.3263 -1.9428 33 1 1.4153 4.7094 -1.9479 34 1 1.7461 6.3790 -1.4262 35 1 4.2762 5.6818 0.2786 36 1 2.9589 6.8150 0.6643 37 1 1.8081 6.7029 2.7968 38 1 1.9325 6.0413 5.1653 39 1 3.5757 4.3558 5.8880 40 1 5.0884 3.3255 4.2408 41 1 4.9581 3.9809 1.8709 42 1 4.5460 1.2669 -0.0109 43 1 2.5846 -3.0951 0.5156 44 1 0.8914 -2.5461 0.5161 45 1 0.7195 -5.9638 -0.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892664188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:23 Heat of formation + Delta-G solvation = -7.784485 kcal Electronic energy + Delta-G solvation = -27384.442383 eV Core-core repulsion = 23560.844529 eV Total energy + Delta-G solvation = -3823.597854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87846 -39.92357 -39.08557 -36.41729 -34.02725 -33.76737 -32.13659 -31.30570 -30.96078 -30.83856 -27.62764 -26.75495 -26.66400 -23.86421 -22.90533 -22.65224 -21.79933 -20.87445 -20.10173 -18.90306 -17.46188 -16.95231 -16.81393 -16.26635 -15.71322 -15.40535 -15.12343 -15.03734 -14.55561 -14.36395 -13.93160 -13.66183 -13.54608 -13.45033 -13.28914 -12.72376 -12.60406 -12.49518 -12.40040 -12.24908 -12.14150 -12.04714 -11.81040 -11.54147 -11.20887 -11.13887 -11.11213 -10.93461 -10.89938 -10.45446 -10.37580 -10.26045 -9.96121 -9.75598 -8.98276 -8.77999 -8.73143 -8.63506 -8.04637 -6.35872 -4.43896 1.25617 1.34003 1.96254 2.73655 2.86893 3.17186 3.23646 3.27153 3.43300 3.69169 3.71889 4.22576 4.50524 4.72224 4.78653 4.92369 4.97820 5.00760 5.06428 5.08063 5.15371 5.17116 5.29078 5.41930 5.42876 5.55795 5.57499 5.61190 5.74564 5.78069 5.93657 5.97024 6.00497 6.05006 6.06113 6.37061 6.37676 6.41686 6.45344 6.54699 6.74671 6.84554 6.87770 6.93457 7.14722 7.52416 7.72037 7.74570 8.24086 8.37607 8.61509 9.23158 10.72398 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002804 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.977393 B = 9982.673301 C =10665.758141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.171 3.829 3 C -0.317 4.317 4 C 0.552 3.448 5 O -0.531 6.531 6 O -0.347 6.347 7 C 0.093 3.907 8 H 0.085 0.915 9 C -0.169 4.169 10 C -0.077 4.077 11 C -0.085 4.085 12 C -0.119 4.119 13 C -0.123 4.123 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.099 4.099 17 C 0.080 3.920 18 N -0.297 5.297 19 N -0.311 5.311 20 C 0.251 3.749 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.183 0.817 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 21.669 6.162 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.330 4.330 4 C 0.399 3.601 5 O -0.422 6.422 6 O -0.264 6.264 7 C 0.038 3.962 8 H 0.103 0.897 9 C -0.227 4.227 10 C -0.114 4.114 11 C -0.085 4.085 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.107 4.107 18 N -0.117 5.117 19 N -0.087 5.087 20 C 0.134 3.866 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.200 0.800 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.521 20.315 6.219 21.535 hybrid contribution -0.623 0.257 -0.898 1.123 sum 2.898 20.572 5.321 21.445 Atomic orbital electron populations 1.20610 0.86648 1.03970 1.04118 1.21443 0.94939 0.86488 0.93825 1.18844 0.93715 0.89408 1.31065 1.20028 0.83504 0.85061 0.71496 1.90739 1.18027 1.84452 1.48990 1.86588 1.39711 1.15408 1.84721 1.22570 0.98148 0.78873 0.96656 0.89741 1.22205 1.02997 1.01739 0.95730 1.20767 1.00802 0.98455 0.91381 1.19799 0.96483 0.97253 0.95001 1.21033 0.99041 1.00411 0.93228 1.21097 0.98849 0.98175 0.95959 1.21148 0.96254 0.97270 0.99571 1.21194 0.99384 0.99685 0.93459 1.21103 0.98340 0.96433 0.95866 1.23877 0.96606 0.92101 0.98107 1.77208 0.98254 1.12342 1.23882 1.49404 1.02616 1.08263 1.48410 1.19891 0.96489 0.70700 0.99547 1.21241 1.47562 0.98199 0.90943 0.91606 1.24924 0.94391 0.95966 0.98342 1.69913 1.44422 1.07199 1.31124 0.86312 0.78120 0.78650 0.83395 1.20210 1.20768 1.19580 0.89571 0.90525 0.88908 0.91531 0.91601 0.91039 0.89670 0.89121 0.86302 0.86309 0.86340 0.86060 0.85664 0.79988 0.92344 0.92492 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.57 36.00 0.34 -1.36 16 2 C 0.17 3.50 7.01 -81.59 -0.57 2.92 16 3 C -0.32 -6.03 6.13 -105.08 -0.64 -6.67 16 4 C 0.55 9.62 7.93 34.41 0.27 9.89 16 5 O -0.53 -9.93 14.10 -19.29 -0.27 -10.20 16 6 O -0.35 -5.01 9.23 -40.62 -0.37 -5.39 16 7 C 0.09 1.06 2.55 -26.73 -0.07 1.00 16 8 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 9 C -0.17 -1.67 9.55 37.16 0.35 -1.31 16 10 C -0.08 -0.69 5.06 -27.88 -0.14 -0.83 16 11 C -0.09 -0.91 4.97 -104.62 -0.52 -1.43 16 12 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 13 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 14 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 15 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 16 C -0.10 -1.11 9.40 -39.59 -0.37 -1.48 16 17 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 18 N -0.30 -6.49 12.50 30.87 0.39 -6.10 16 19 N -0.31 -7.04 3.56 -57.77 -0.21 -7.25 16 20 C 0.25 6.20 5.96 -5.20 -0.03 6.17 16 21 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 22 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 25 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.33 7.05 -51.93 -0.37 0.96 16 31 H 0.09 1.57 6.51 -51.93 -0.34 1.23 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -30.48 387.29 -8.97 -39.45 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.48 Total: 3.15 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.57 Total: -11.47 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.92 Total: -37.05 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.65 Total: -15.59 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.48 -8.97 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892664188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.663 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds