Wall clock time and date at job start Tue Mar 31 2020 15:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38131 * 126.29734 * 2 1 4 4 C 1.47286 * 126.42576 * 359.97438 * 3 2 1 5 5 O 1.21533 * 119.99998 * 0.02562 * 4 3 2 6 6 O 1.34749 * 120.00327 * 179.72370 * 4 3 2 7 7 C 1.45196 * 117.00462 * 180.27192 * 6 4 3 8 8 H 1.09003 * 109.46716 * 30.00449 * 7 6 4 9 9 C 1.52998 * 109.47567 * 270.00604 * 7 6 4 10 10 C 1.52999 * 109.47043 * 150.00122 * 7 6 4 11 11 C 1.50703 * 109.47300 * 295.00434 * 10 7 6 12 12 C 1.38238 * 119.99617 * 269.72589 * 11 10 7 13 13 C 1.38245 * 119.99112 * 179.76565 * 12 11 10 14 14 C 1.38231 * 120.00290 * 0.50720 * 13 12 11 15 15 C 1.38233 * 119.99804 * 359.74840 * 14 13 12 16 16 C 1.38231 * 119.99924 * 89.99874 * 11 10 7 17 17 C 1.41343 * 107.14857 * 180.24216 * 3 2 1 18 18 N 1.30434 * 108.01093 * 359.58886 * 17 3 2 19 19 N 1.34222 * 126.29620 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.74542 * 359.97309 * 19 2 1 21 21 C 1.50692 * 109.47346 * 89.99111 * 20 19 2 22 22 H 1.07993 * 120.00381 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99874 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47266 * 90.00521 * 25 23 21 27 27 H 1.48501 * 109.47128 * 210.00368 * 25 23 21 28 28 H 1.48499 * 109.47079 * 330.00463 * 25 23 21 29 29 H 1.08996 * 109.47173 * 89.97500 * 1 2 3 30 30 H 1.08998 * 109.47292 * 209.97845 * 1 2 3 31 31 H 1.09001 * 109.46953 * 329.97858 * 1 2 3 32 32 H 1.09003 * 109.46976 * 299.99686 * 9 7 6 33 33 H 1.09000 * 109.47289 * 59.99318 * 9 7 6 34 34 H 1.08999 * 109.47363 * 180.02562 * 9 7 6 35 35 H 1.09001 * 109.47454 * 55.00427 * 10 7 6 36 36 H 1.09005 * 109.46952 * 175.00489 * 10 7 6 37 37 H 1.07995 * 120.00550 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.99053 * 180.23142 * 13 12 11 39 39 H 1.07998 * 120.00042 * 179.72261 * 14 13 12 40 40 H 1.08003 * 119.99938 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.00128 * 0.02562 * 16 11 10 42 42 H 1.07995 * 125.99376 * 179.75586 * 17 3 2 43 43 H 1.08999 * 109.47360 * 209.99930 * 20 19 2 44 44 H 1.09005 * 109.46438 * 329.99188 * 20 19 2 45 45 H 0.96998 * 120.00270 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7017 2.7873 -0.0006 6 8 2.8014 3.5097 0.0052 7 6 2.2982 4.8716 0.0104 8 1 1.3367 4.9017 0.5230 9 6 2.1234 5.3564 -1.4302 10 6 3.2922 5.7798 0.7371 11 6 3.3718 5.3785 2.1875 12 6 2.5261 5.9608 3.1131 13 6 2.5958 5.5891 4.4428 14 6 3.5182 4.6428 4.8485 15 6 4.3674 4.0645 3.9237 16 6 4.2942 4.4322 2.5932 17 6 3.6599 0.6496 -0.0057 18 7 3.6340 -0.6544 0.0000 19 7 2.3015 -1.0818 0.0005 20 6 1.8498 -2.4754 0.0017 21 6 1.6942 -2.9542 -1.4187 22 1 1.9105 -2.2874 -2.2401 23 6 1.2766 -4.2441 -1.6695 24 7 1.0136 -5.0564 -0.6691 25 14 1.0843 -4.8380 -3.4301 26 1 2.3653 -5.4267 -3.8966 27 1 0.0153 -5.8669 -3.4915 28 1 0.7195 -3.6924 -4.3018 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 3.0849 5.3263 -1.9428 33 1 1.4153 4.7094 -1.9479 34 1 1.7461 6.3790 -1.4262 35 1 4.2762 5.6818 0.2786 36 1 2.9589 6.8150 0.6643 37 1 1.8081 6.7029 2.7968 38 1 1.9325 6.0413 5.1653 39 1 3.5757 4.3558 5.8880 40 1 5.0884 3.3255 4.2408 41 1 4.9581 3.9809 1.8709 42 1 4.5460 1.2669 -0.0109 43 1 2.5846 -3.0951 0.5156 44 1 0.8914 -2.5461 0.5161 45 1 0.7195 -5.9638 -0.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892664188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:22 Heat of formation + Delta-G solvation = -21.730357 kcal Electronic energy + Delta-G solvation = -27385.047121 eV Core-core repulsion = 23560.844529 eV Total energy + Delta-G solvation = -3824.202592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.41876 -41.09996 -39.97042 -37.61798 -35.84852 -34.79574 -33.87464 -32.85644 -31.74769 -31.69319 -29.38485 -28.35130 -27.42046 -25.60748 -24.33297 -23.41451 -22.85076 -21.93454 -21.32248 -20.48448 -18.94557 -18.74284 -17.76536 -17.51378 -16.95971 -16.82486 -16.32632 -16.04054 -15.93341 -15.89257 -15.18209 -14.76163 -14.66026 -14.50126 -14.26290 -14.20532 -14.03859 -13.73690 -13.62321 -13.43201 -13.35900 -13.15297 -13.00306 -12.92434 -12.87722 -12.71286 -12.32683 -12.06792 -11.92272 -11.87014 -11.82178 -11.72451 -11.40036 -11.19450 -10.77042 -10.33082 -9.75568 -9.65288 -9.55071 -8.39122 -6.55438 0.45194 0.48726 0.56699 1.20166 1.37391 1.38208 1.44934 1.52315 1.97260 2.27661 2.32221 2.91434 2.93574 3.65686 3.72958 3.74845 3.96898 3.97693 4.03172 4.15118 4.20973 4.24836 4.29283 4.38620 4.46720 4.56026 4.59607 4.69242 4.72340 4.80440 4.85034 4.86086 4.92134 4.98183 5.04391 5.10905 5.20423 5.23576 5.27391 5.47797 5.53509 5.61733 5.63321 5.68747 5.72676 5.78458 5.96560 6.19003 6.52811 6.73268 6.96503 7.15761 8.69046 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002804 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.977393 B = 9982.673301 C =10665.758141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.158 3.842 3 C -0.321 4.321 4 C 0.557 3.443 5 O -0.546 6.546 6 O -0.342 6.342 7 C 0.087 3.913 8 H 0.070 0.930 9 C -0.166 4.166 10 C -0.069 4.069 11 C -0.098 4.098 12 C -0.128 4.128 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.137 4.137 16 C -0.118 4.118 17 C 0.098 3.902 18 N -0.334 5.334 19 N -0.333 5.333 20 C 0.266 3.734 21 C -0.557 4.557 22 H 0.053 0.947 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.222 0.778 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 23.772 5.449 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.021 3.979 3 C -0.334 4.334 4 C 0.405 3.595 5 O -0.438 6.438 6 O -0.259 6.259 7 C 0.033 3.967 8 H 0.088 0.912 9 C -0.223 4.223 10 C -0.106 4.106 11 C -0.098 4.098 12 C -0.146 4.146 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.136 4.136 17 C -0.089 4.089 18 N -0.153 5.153 19 N -0.109 5.109 20 C 0.148 3.852 21 C -0.595 4.595 22 H 0.071 0.929 23 C -0.176 4.176 24 N -0.554 5.554 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.193 1.193 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.238 0.762 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.587 22.445 5.515 23.390 hybrid contribution -0.604 -0.238 -0.601 0.884 sum 2.983 22.207 4.914 22.939 Atomic orbital electron populations 1.20629 0.85315 1.04419 1.04394 1.21937 0.96029 0.86430 0.93493 1.19100 0.93810 0.90218 1.30260 1.19743 0.83520 0.85057 0.71209 1.90728 1.18723 1.84742 1.49654 1.86566 1.38927 1.16419 1.83997 1.22911 0.98329 0.77434 0.98045 0.91154 1.22205 1.03085 1.02789 0.94204 1.20810 1.00677 0.99126 0.89948 1.20050 0.96465 0.97236 0.96062 1.21357 0.99205 1.00718 0.93301 1.21433 0.98965 0.98031 0.96591 1.21435 0.96242 0.97377 1.00381 1.21429 1.00000 1.00238 0.93782 1.21294 0.99004 0.97084 0.96170 1.24489 0.97726 0.91232 0.95487 1.77162 0.98156 1.14132 1.25884 1.49163 1.03381 1.07846 1.50552 1.19441 0.95493 0.71937 0.98335 1.21385 1.48080 0.98560 0.91476 0.92900 1.25718 0.93766 0.95897 1.02263 1.69992 1.44736 1.07628 1.33021 0.85348 0.78329 0.78246 0.78569 1.19870 1.19580 1.19348 0.89284 0.90462 0.87943 0.90533 0.93874 0.88158 0.88690 0.86186 0.84363 0.84394 0.84866 0.85360 0.85454 0.76170 0.94833 0.92806 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.57 71.23 0.68 -2.54 16 2 C 0.16 6.50 7.01 42.17 0.30 6.80 16 3 C -0.32 -12.02 6.13 -20.16 -0.12 -12.14 16 4 C 0.56 18.86 7.93 70.20 0.56 19.41 16 5 O -0.55 -19.98 14.10 19.73 0.28 -19.70 16 6 O -0.34 -9.30 9.23 -56.60 -0.52 -9.82 16 7 C 0.09 1.81 2.55 30.59 0.08 1.89 16 8 H 0.07 1.69 7.16 -2.39 -0.02 1.67 16 9 C -0.17 -2.84 9.55 71.98 0.69 -2.15 16 10 C -0.07 -1.03 5.06 29.85 0.15 -0.88 16 11 C -0.10 -1.90 4.97 -19.87 -0.10 -1.99 16 12 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 13 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 14 C -0.14 -2.64 10.05 22.27 0.22 -2.41 16 15 C -0.14 -2.85 10.05 22.27 0.22 -2.63 16 16 C -0.12 -2.49 9.40 22.27 0.21 -2.28 16 17 C 0.10 3.51 11.87 85.66 1.02 4.53 16 18 N -0.33 -14.70 12.50 -56.25 -0.70 -15.41 16 19 N -0.33 -15.44 3.56 -336.67 -1.20 -16.64 16 20 C 0.27 13.65 5.96 85.63 0.51 14.16 16 21 C -0.56 -30.46 9.39 25.60 0.24 -30.22 16 22 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 23 C 0.03 1.35 5.46 84.65 0.46 1.81 16 24 N -0.92 -50.84 13.29 21.45 0.28 -50.55 16 25 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.08 2.72 7.05 -2.39 -0.02 2.71 16 31 H 0.10 3.45 6.51 -2.39 -0.02 3.43 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 36 H 0.12 1.12 8.08 -2.38 -0.02 1.10 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.22 5.87 8.06 -2.91 -0.02 5.85 16 43 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 2.74 7.01 -2.38 -0.02 2.72 16 45 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -66.05 387.29 6.71 -59.35 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.98 Total: 21.35 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.55 Total: -12.93 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.62 Total: -82.60 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.24 Total: -29.52 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -66.05 6.71 -59.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892664188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.616 kcal (2) G-P(sol) polarization free energy of solvation -66.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds