Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.38263 * 119.99817 * 269.72358 * 9 8 7 11 11 C 1.38214 * 119.99910 * 179.78631 * 10 9 8 12 12 C 1.38255 * 119.99819 * 0.46708 * 11 10 9 13 13 C 1.38214 * 119.99911 * 359.76549 * 12 11 10 14 14 C 1.50703 * 119.99651 * 179.97438 * 13 12 11 15 15 C 1.38206 * 120.00148 * 89.99903 * 9 8 7 16 16 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 17 17 N 1.30427 * 108.01038 * 359.72043 * 16 3 2 18 18 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 19 19 C 1.46491 * 125.74900 * 359.97341 * 18 2 1 20 20 C 1.50702 * 109.46957 * 90.00099 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 29 29 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 30 30 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 31 31 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 32 32 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 33 33 H 1.09001 * 109.47377 * 300.00103 * 8 7 6 34 34 H 1.08997 * 109.47491 * 60.00394 * 8 7 6 35 35 H 1.08004 * 119.99919 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.99748 * 180.25369 * 11 10 9 37 37 H 1.08001 * 119.99627 * 179.78543 * 12 11 10 38 38 H 1.09008 * 109.46928 * 270.02378 * 14 13 12 39 39 H 1.09000 * 109.47268 * 30.01739 * 14 13 12 40 40 H 1.08997 * 109.47316 * 150.02599 * 14 13 12 41 41 H 1.08002 * 119.99992 * 359.97438 * 15 9 8 42 42 H 1.08000 * 125.99491 * 179.97438 * 16 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 19 18 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 19 18 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 2.9522 7.2635 0.0053 10 6 2.7164 7.9155 -1.1909 11 6 2.2332 9.2104 -1.1887 12 6 1.9949 9.8572 0.0097 13 6 2.2352 9.2071 1.2056 14 6 1.9760 9.9124 2.5119 15 6 2.7144 7.9103 1.2033 16 6 3.6599 0.6496 -0.0006 17 7 3.6340 -0.6544 0.0051 18 7 2.3015 -1.0818 -0.0005 19 6 1.8499 -2.4754 -0.0006 20 6 1.6945 -2.9530 -1.4214 21 1 1.9110 -2.2853 -2.2423 22 6 1.2819 -4.2443 -1.6735 23 7 1.0187 -5.0574 -0.6739 24 14 1.0967 -4.8386 -3.4346 25 1 2.3810 -5.4230 -3.8975 26 1 0.0314 -5.8711 -3.4992 27 1 0.7306 -3.6943 -4.3074 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6897 5.0353 -0.8860 32 1 1.6910 5.0334 0.8939 33 1 4.0835 5.6864 0.8920 34 1 4.0814 5.6881 -0.8879 35 1 2.9061 7.4114 -2.1271 36 1 2.0451 9.7181 -2.1232 37 1 1.6206 10.8703 0.0114 38 1 2.8776 10.4383 2.8260 39 1 1.1641 10.6283 2.3835 40 1 1.6989 9.1810 3.2710 41 1 2.9025 7.4025 2.1378 42 1 4.5461 1.2669 -0.0012 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893115540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = -12.676967 kcal Electronic energy + Delta-G solvation = -26041.859833 eV Core-core repulsion = 22218.049825 eV Total energy + Delta-G solvation = -3823.810008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88110 -39.92420 -39.41635 -36.27970 -34.24074 -33.91375 -32.50631 -32.13972 -31.26093 -29.39729 -27.59055 -27.18452 -26.74172 -24.33542 -23.38976 -22.36396 -22.08446 -20.68375 -20.25392 -18.90253 -17.39016 -16.82195 -16.71788 -16.44861 -16.28024 -15.59659 -15.17705 -15.04689 -14.57849 -14.43252 -14.17133 -13.72998 -13.60766 -13.43598 -13.30170 -13.17904 -12.71943 -12.62372 -12.53477 -12.32707 -12.12043 -11.84818 -11.82705 -11.67161 -11.54742 -11.33005 -11.25656 -11.14787 -10.91845 -10.43206 -10.40221 -10.29671 -9.97082 -9.80384 -9.09895 -8.89891 -8.73857 -8.64689 -8.07462 -6.36525 -4.44726 1.00918 1.08791 1.92434 2.70931 2.81441 3.17015 3.23520 3.26446 3.37623 3.50495 3.68150 4.22154 4.43810 4.49548 4.60603 4.82395 4.85914 4.90446 4.98059 5.00848 5.14362 5.16902 5.21250 5.25231 5.27891 5.34577 5.44865 5.47593 5.59576 5.64670 5.74590 5.82422 5.85092 5.98540 6.01241 6.17099 6.27192 6.33257 6.37703 6.45734 6.70454 6.71732 6.79213 6.86260 7.13243 7.51499 7.70924 7.73666 8.19067 8.34958 8.60915 9.22499 10.71624 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.001905 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.055813 B =14698.252572 C =14899.533511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.172 3.828 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.530 6.530 6 O -0.357 6.357 7 C 0.076 3.924 8 C -0.080 4.080 9 C -0.077 4.077 10 C -0.118 4.118 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.086 4.086 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.080 3.920 17 N -0.297 5.297 18 N -0.311 5.311 19 C 0.250 3.750 20 C -0.542 4.542 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.185 0.815 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 26.532 3.521 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.399 3.601 5 O -0.421 6.421 6 O -0.274 6.274 7 C 0.002 3.998 8 C -0.117 4.117 9 C -0.077 4.077 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.142 4.142 13 C -0.086 4.086 14 C -0.172 4.172 15 C -0.131 4.131 16 C -0.107 4.107 17 N -0.117 5.117 18 N -0.087 5.087 19 C 0.133 3.867 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.202 0.798 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.395 25.171 3.587 25.538 hybrid contribution -0.591 0.391 -0.979 1.209 sum 1.804 25.562 2.607 25.758 Atomic orbital electron populations 1.20665 0.86609 1.05088 1.03518 1.21453 0.94979 0.86428 0.93704 1.18841 0.93808 0.89296 1.31270 1.20035 0.83364 0.84921 0.71801 1.90760 1.18004 1.84560 1.48732 1.86508 1.40076 1.15673 1.85165 1.22864 0.96096 0.78089 1.02743 1.20511 0.97202 0.89263 1.04759 1.19660 0.99504 0.95201 0.93366 1.21108 0.99769 0.95071 0.97686 1.21137 0.99120 0.95000 0.98037 1.21050 1.01136 0.99882 0.92098 1.19928 0.98765 0.94484 0.95466 1.20805 1.01962 1.00300 0.94130 1.20986 0.99967 0.94464 0.97711 1.23919 0.96636 0.92114 0.98030 1.77211 0.98280 1.12354 1.23820 1.49425 1.02611 1.08283 1.48348 1.19904 0.96539 0.70676 0.99572 1.21253 1.47733 0.98131 0.90939 0.91577 1.24929 0.94387 0.95961 0.98361 1.69914 1.44405 1.07111 1.31147 0.86309 0.78121 0.78646 0.83379 1.20210 1.20775 1.19574 0.90198 0.88680 0.89490 0.91297 0.91324 0.89683 0.89621 0.85834 0.85970 0.86189 0.91149 0.91544 0.91404 0.85865 0.79810 0.92435 0.92281 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.34 36.01 0.34 -1.44 16 2 C 0.17 3.50 7.01 -81.59 -0.57 2.92 16 3 C -0.32 -6.03 6.13 -105.08 -0.64 -6.67 16 4 C 0.55 9.62 7.95 34.41 0.27 9.89 16 5 O -0.53 -9.96 14.63 -19.28 -0.28 -10.24 16 6 O -0.36 -5.22 10.07 -40.64 -0.41 -5.63 16 7 C 0.08 0.90 5.46 37.16 0.20 1.10 16 8 C -0.08 -0.73 5.73 -27.88 -0.16 -0.89 16 9 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 10 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 11 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 12 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 13 C -0.09 -0.70 5.88 -104.62 -0.62 -1.31 16 14 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 15 C -0.11 -0.98 9.36 -39.59 -0.37 -1.35 16 16 C 0.08 1.47 11.87 -16.97 -0.20 1.27 16 17 N -0.30 -6.46 12.50 30.87 0.39 -6.07 16 18 N -0.31 -6.99 3.56 -57.77 -0.21 -7.20 16 19 C 0.25 6.14 5.78 -5.20 -0.03 6.11 16 20 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 24 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.63 6.51 -51.93 -0.34 1.30 16 30 H 0.09 1.58 7.70 -51.93 -0.40 1.18 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.09 0.72 8.08 -51.93 -0.42 0.31 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 40 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.19 2.63 8.06 -52.49 -0.42 2.20 16 43 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 44 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -30.25 390.11 -9.04 -39.29 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.59 Total: 0.94 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.54 Total: -9.02 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.92 Total: -36.83 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.69 Total: -15.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.25 -9.04 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893115540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.616 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds