Wall clock time and date at job start Tue Mar 31 2020 14:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.47054 * 180.02562 * 8 7 6 10 10 C 1.38263 * 119.99817 * 269.72358 * 9 8 7 11 11 C 1.38214 * 119.99910 * 179.78631 * 10 9 8 12 12 C 1.38255 * 119.99819 * 0.46708 * 11 10 9 13 13 C 1.38214 * 119.99911 * 359.76549 * 12 11 10 14 14 C 1.50703 * 119.99651 * 179.97438 * 13 12 11 15 15 C 1.38206 * 120.00148 * 89.99903 * 9 8 7 16 16 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 17 17 N 1.30427 * 108.01038 * 359.72043 * 16 3 2 18 18 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 19 19 C 1.46491 * 125.74900 * 359.97341 * 18 2 1 20 20 C 1.50702 * 109.46957 * 90.00099 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 29 29 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 30 30 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 31 31 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 32 32 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 33 33 H 1.09001 * 109.47377 * 300.00103 * 8 7 6 34 34 H 1.08997 * 109.47491 * 60.00394 * 8 7 6 35 35 H 1.08004 * 119.99919 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.99748 * 180.25369 * 11 10 9 37 37 H 1.08001 * 119.99627 * 179.78543 * 12 11 10 38 38 H 1.09008 * 109.46928 * 270.02378 * 14 13 12 39 39 H 1.09000 * 109.47268 * 30.01739 * 14 13 12 40 40 H 1.08997 * 109.47316 * 150.02599 * 14 13 12 41 41 H 1.08002 * 119.99992 * 359.97438 * 15 9 8 42 42 H 1.08000 * 125.99491 * 179.97438 * 16 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 19 18 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 19 18 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 2.9522 7.2635 0.0053 10 6 2.7164 7.9155 -1.1909 11 6 2.2332 9.2104 -1.1887 12 6 1.9949 9.8572 0.0097 13 6 2.2352 9.2071 1.2056 14 6 1.9760 9.9124 2.5119 15 6 2.7144 7.9103 1.2033 16 6 3.6599 0.6496 -0.0006 17 7 3.6340 -0.6544 0.0051 18 7 2.3015 -1.0818 -0.0005 19 6 1.8499 -2.4754 -0.0006 20 6 1.6945 -2.9530 -1.4214 21 1 1.9110 -2.2853 -2.2423 22 6 1.2819 -4.2443 -1.6735 23 7 1.0187 -5.0574 -0.6739 24 14 1.0967 -4.8386 -3.4346 25 1 2.3810 -5.4230 -3.8975 26 1 0.0314 -5.8711 -3.4992 27 1 0.7306 -3.6943 -4.3074 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 1.6897 5.0353 -0.8860 32 1 1.6910 5.0334 0.8939 33 1 4.0835 5.6864 0.8920 34 1 4.0814 5.6881 -0.8879 35 1 2.9061 7.4114 -2.1271 36 1 2.0451 9.7181 -2.1232 37 1 1.6206 10.8703 0.0114 38 1 2.8776 10.4383 2.8260 39 1 1.1641 10.6283 2.3835 40 1 1.6989 9.1810 3.2710 41 1 2.9025 7.4025 2.1378 42 1 4.5461 1.2669 -0.0012 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893115540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:15 Heat of formation + Delta-G solvation = -26.178257 kcal Electronic energy + Delta-G solvation = -26042.445293 eV Core-core repulsion = 22218.049825 eV Total energy + Delta-G solvation = -3824.395467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42198 -40.98722 -40.29088 -37.52731 -35.84188 -34.94981 -33.89054 -33.10243 -32.84052 -30.29626 -29.21473 -28.31817 -27.71972 -25.67466 -24.87200 -23.54884 -22.85637 -21.78167 -21.29853 -20.45092 -18.92660 -18.67901 -17.61537 -17.54491 -17.32522 -16.84426 -16.42761 -16.23126 -15.96932 -15.67333 -15.18615 -14.80961 -14.74599 -14.43583 -14.31486 -14.13176 -14.04536 -13.83900 -13.67245 -13.61464 -13.17652 -13.13013 -13.11315 -12.99543 -12.72443 -12.67895 -12.46228 -12.32019 -11.96818 -11.87871 -11.86583 -11.80859 -11.44710 -11.27918 -10.76687 -10.32379 -9.71617 -9.66628 -9.49915 -8.38710 -6.54897 0.38018 0.42745 0.48619 1.18926 1.37695 1.38598 1.43742 1.51697 1.92188 2.24044 2.32499 2.83671 2.93960 3.65771 3.68705 3.83332 3.88703 3.98330 4.05046 4.09541 4.12183 4.18327 4.28393 4.38727 4.50503 4.56249 4.57585 4.62430 4.72419 4.77819 4.83949 4.85276 4.89147 4.93013 5.01889 5.05660 5.10313 5.20601 5.32482 5.45328 5.48454 5.57919 5.61470 5.68227 5.71437 5.73236 5.96696 6.13521 6.53403 6.72555 6.89562 7.16284 8.69279 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.001905 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.055813 B =14698.252572 C =14899.533511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 C -0.322 4.322 4 C 0.558 3.442 5 O -0.545 6.545 6 O -0.350 6.350 7 C 0.075 3.925 8 C -0.070 4.070 9 C -0.090 4.090 10 C -0.132 4.132 11 C -0.123 4.123 12 C -0.131 4.131 13 C -0.097 4.097 14 C -0.114 4.114 15 C -0.127 4.127 16 C 0.098 3.902 17 N -0.335 5.335 18 N -0.333 5.333 19 C 0.265 3.735 20 C -0.557 4.557 21 H 0.053 0.947 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.225 0.775 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 28.467 2.985 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 C -0.336 4.336 4 C 0.405 3.595 5 O -0.437 6.437 6 O -0.267 6.267 7 C 0.001 3.999 8 C -0.107 4.107 9 C -0.090 4.090 10 C -0.150 4.150 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.097 4.097 14 C -0.171 4.171 15 C -0.145 4.145 16 C -0.089 4.089 17 N -0.154 5.154 18 N -0.109 5.109 19 C 0.147 3.853 20 C -0.595 4.595 21 H 0.071 0.929 22 C -0.177 4.177 23 N -0.553 5.553 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.242 0.758 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.552 27.133 3.060 27.424 hybrid contribution -0.612 -0.027 -0.771 0.985 sum 1.940 27.106 2.289 27.272 Atomic orbital electron populations 1.20684 0.85202 1.04737 1.04611 1.21957 0.96096 0.86345 0.93224 1.19057 0.93927 0.89953 1.30628 1.19770 0.83334 0.84917 0.71458 1.90752 1.18716 1.84830 1.49403 1.86487 1.39249 1.16468 1.84464 1.23107 0.97427 0.76829 1.02532 1.20447 0.96137 0.88545 1.05552 1.19710 1.00321 0.95150 0.93802 1.21323 1.00052 0.95642 0.97966 1.21424 0.98693 0.94911 0.99016 1.21364 1.00764 1.00788 0.91988 1.20249 0.98366 0.94483 0.96597 1.20840 1.02710 1.00440 0.93105 1.21191 1.00286 0.95029 0.97970 1.24562 0.97780 0.91233 0.95314 1.77168 0.98196 1.14176 1.25864 1.49182 1.03379 1.07873 1.50507 1.19458 0.95587 0.71920 0.98318 1.21392 1.48177 0.98451 0.91506 0.92917 1.25712 0.93806 0.95923 1.02218 1.69991 1.44750 1.07526 1.32992 0.85354 0.78308 0.78223 0.78633 1.19904 1.19609 1.19405 0.88370 0.88125 0.90501 0.91627 0.91476 0.88851 0.88894 0.85042 0.84230 0.84379 0.90298 0.90621 0.91215 0.85169 0.75843 0.92672 0.94726 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.31 9.34 71.24 0.67 -2.65 16 2 C 0.16 6.50 7.01 42.17 0.30 6.80 16 3 C -0.32 -11.86 6.13 -20.16 -0.12 -11.99 16 4 C 0.56 18.66 7.95 70.20 0.56 19.22 16 5 O -0.54 -19.85 14.63 19.77 0.29 -19.56 16 6 O -0.35 -9.56 10.07 -56.67 -0.57 -10.13 16 7 C 0.07 1.65 5.46 71.98 0.39 2.04 16 8 C -0.07 -1.14 5.73 29.85 0.17 -0.97 16 9 C -0.09 -1.51 5.13 -19.86 -0.10 -1.61 16 10 C -0.13 -2.10 9.70 22.27 0.22 -1.89 16 11 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 12 C -0.13 -1.81 9.70 22.27 0.22 -1.59 16 13 C -0.10 -1.42 5.88 -19.87 -0.12 -1.54 16 14 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 15 C -0.13 -2.04 9.36 22.27 0.21 -1.84 16 16 C 0.10 3.46 11.87 85.67 1.02 4.48 16 17 N -0.33 -14.57 12.50 -56.25 -0.70 -15.27 16 18 N -0.33 -15.25 3.56 -336.67 -1.20 -16.45 16 19 C 0.27 13.46 5.78 85.64 0.50 13.96 16 20 C -0.56 -30.26 9.39 25.60 0.24 -30.02 16 21 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 22 C 0.03 1.34 5.46 84.66 0.46 1.80 16 23 N -0.91 -50.47 13.29 21.45 0.28 -50.19 16 24 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.10 3.40 6.51 -2.39 -0.02 3.39 16 30 H 0.08 2.83 7.70 -2.39 -0.02 2.81 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 40 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 43 H 0.06 2.77 7.62 -2.38 -0.02 2.75 16 44 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -64.53 390.11 6.64 -57.89 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.98 Total: 17.20 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.53 Total: -7.72 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.62 Total: -81.90 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.28 Total: -29.69 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -64.53 6.64 -57.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893115540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.710 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds