Wall clock time and date at job start Tue Mar 31 2020 15:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.51286 * 137.67673 * 2 1 4 4 N 1.47127 * 87.69864 * 205.78948 * 3 2 1 5 5 C 1.34776 * 136.17816 * 153.55738 * 4 3 2 6 6 O 1.21272 * 120.00308 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99477 * 179.97438 * 5 4 3 8 8 C 1.53000 * 109.47055 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47249 * 179.97438 * 8 7 5 10 10 O 1.21283 * 119.99983 * 5.33172 * 9 8 7 11 11 N 1.34771 * 119.99923 * 185.32717 * 9 8 7 12 12 C 1.46498 * 120.00047 * 185.21827 * 11 9 8 13 13 C 1.50701 * 109.47396 * 90.00087 * 12 11 9 14 14 H 1.08004 * 120.00000 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00348 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99810 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46824 * 90.00435 * 17 15 13 19 19 H 1.48499 * 109.46971 * 209.99831 * 17 15 13 20 20 H 1.48493 * 109.47123 * 330.00234 * 17 15 13 21 21 C 1.39931 * 120.00278 * 5.21968 * 11 9 8 22 22 C 1.38867 * 120.06837 * 292.46016 * 21 11 9 23 23 C 1.38117 * 119.92624 * 179.79036 * 22 21 11 24 24 C 1.38280 * 120.06884 * 0.48588 * 23 22 21 25 25 C 1.38281 * 120.14137 * 359.74378 * 24 23 22 26 26 C 1.38108 * 120.07328 * 0.02562 * 25 24 23 27 27 C 1.47118 * 87.63050 * 333.80993 * 4 3 2 28 28 H 1.08003 * 120.00305 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99785 * 179.97438 * 1 2 3 30 30 H 1.09001 * 113.50749 * 91.07983 * 3 2 1 31 31 H 1.08995 * 113.57194 * 320.50860 * 3 2 1 32 32 H 1.09003 * 109.47436 * 60.00215 * 7 5 4 33 33 H 1.09003 * 109.47584 * 299.99538 * 7 5 4 34 34 H 1.09000 * 109.47350 * 300.00179 * 8 7 5 35 35 H 1.08996 * 109.47011 * 60.00426 * 8 7 5 36 36 H 1.08998 * 109.47355 * 210.00107 * 12 11 9 37 37 H 1.09003 * 109.47399 * 330.00297 * 12 11 9 38 38 H 0.97005 * 119.99482 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.03828 * 0.02562 * 22 21 11 40 40 H 1.07994 * 119.96455 * 180.23166 * 23 22 21 41 41 H 1.07997 * 119.92723 * 179.72576 * 24 23 22 42 42 H 1.08003 * 119.96345 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.03489 * 179.97438 * 26 25 24 44 44 H 1.09003 * 113.51741 * 140.90037 * 27 4 3 45 45 H 1.09000 * 113.51512 * 271.48520 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.4285 1.0186 0.0000 4 7 3.2760 0.0002 -0.6396 5 6 4.3521 0.0006 -1.4511 6 8 4.8360 1.0509 -1.8161 7 6 4.9540 -1.3044 -1.9048 8 6 6.1546 -1.0245 -2.8110 9 6 6.7569 -2.3295 -3.2642 10 8 6.2179 -3.3778 -2.9787 11 7 7.8945 -2.3316 -3.9869 12 6 8.4184 -3.5896 -4.5246 13 6 7.8436 -3.8273 -5.8973 14 1 7.1570 -3.1125 -6.3264 15 6 8.1941 -4.9573 -6.6053 16 7 9.0297 -5.8279 -6.0826 17 14 7.4810 -5.2522 -8.3065 18 1 8.3676 -4.6391 -9.3279 19 1 7.3775 -6.7128 -8.5534 20 1 6.1311 -4.6390 -8.3905 21 6 8.5753 -1.1322 -4.2236 22 6 8.0055 -0.1563 -5.0307 23 6 8.6782 1.0282 -5.2589 24 6 9.9221 1.2387 -4.6928 25 6 10.4942 0.2670 -3.8925 26 6 9.8247 -0.9177 -3.6566 27 6 2.4245 -1.0185 -0.0060 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.7626 1.2974 0.9994 31 1 2.2316 1.8821 -0.6353 32 1 4.2080 -1.8761 -2.4569 33 1 5.2798 -1.8759 -1.0357 34 1 5.8284 -0.4531 -3.6801 35 1 6.9007 -0.4527 -2.2593 36 1 9.5048 -3.5321 -4.5907 37 1 8.1374 -4.4114 -3.8658 38 1 9.2766 -6.6227 -6.5809 39 1 7.0358 -0.3219 -5.4765 40 1 8.2340 1.7890 -5.8835 41 1 10.4480 2.1640 -4.8764 42 1 11.4657 0.4346 -3.4515 43 1 10.2723 -1.6764 -3.0318 44 1 2.2234 -1.8771 -0.6467 45 1 2.7576 -1.3045 0.9917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898694890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:58 Heat of formation + Delta-G solvation = 24.410501 kcal Electronic energy + Delta-G solvation = -27247.294284 eV Core-core repulsion = 23425.092510 eV Total energy + Delta-G solvation = -3822.201774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58987 -39.86942 -38.32105 -37.84668 -34.88045 -32.94815 -32.53085 -31.97841 -30.61006 -29.33926 -28.17834 -27.05346 -26.53783 -24.65842 -22.71625 -22.24599 -21.86522 -19.58077 -18.92389 -18.58743 -17.52884 -16.60702 -16.43689 -16.29503 -16.19955 -15.65438 -15.49131 -15.21105 -14.64622 -14.54179 -14.25172 -14.10177 -13.78520 -13.57461 -13.20847 -13.08546 -12.79937 -12.60494 -12.36299 -12.27177 -12.11920 -11.83097 -11.43574 -11.19039 -11.10501 -10.88375 -10.78429 -10.77210 -10.62478 -10.19653 -10.12678 -9.73683 -9.64572 -9.32664 -8.99218 -8.61311 -8.52021 -8.43983 -7.65120 -6.07037 -4.11649 1.63794 1.64191 1.72603 2.50907 2.74211 3.27038 3.29870 3.35829 3.40611 3.73590 3.79830 4.10755 4.24657 4.43105 4.50940 4.95463 5.03893 5.09137 5.12589 5.16926 5.24056 5.24876 5.26848 5.28851 5.31991 5.39806 5.42725 5.60729 5.72358 5.76486 5.89057 5.89747 5.99077 6.11946 6.13141 6.27832 6.33314 6.67110 6.80217 6.86173 7.00391 7.24311 7.36566 7.48340 7.50144 7.88669 8.03139 8.17709 8.34209 8.82318 8.97494 9.52939 11.01293 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.003369 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.440967 B = 8310.116926 C =10075.592894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.177 4.177 3 C 0.135 3.865 4 N -0.650 5.650 5 C 0.549 3.451 6 O -0.535 6.535 7 C -0.116 4.116 8 C -0.125 4.125 9 C 0.516 3.484 10 O -0.534 6.534 11 N -0.561 5.561 12 C 0.247 3.753 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.163 3.837 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.110 4.110 26 C -0.125 4.125 27 C 0.132 3.868 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.088 0.912 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 14.173 12.329 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.013 3.987 4 N -0.386 5.386 5 C 0.340 3.660 6 O -0.411 6.411 7 C -0.156 4.156 8 C -0.165 4.165 9 C 0.304 3.696 10 O -0.411 6.411 11 N -0.288 5.288 12 C 0.129 3.871 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.071 3.929 22 C -0.140 4.140 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.129 4.129 26 C -0.145 4.145 27 C 0.009 3.991 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.106 0.894 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.550 13.925 12.081 20.762 hybrid contribution -0.249 -0.294 -1.070 1.137 sum -9.799 13.631 11.011 20.077 Atomic orbital electron populations 1.22891 0.92708 1.02900 0.99225 1.22855 0.94027 0.98396 1.02546 1.22085 0.85368 0.93158 0.98084 1.49446 1.29927 1.11107 1.48153 1.20433 0.76956 0.91896 0.76710 1.90716 1.59984 1.34089 1.56360 1.21322 0.98650 0.94017 1.01597 1.21465 0.97453 0.96557 1.01066 1.20329 0.80468 0.90585 0.78218 1.90663 1.60293 1.33786 1.56310 1.45934 1.23832 1.08019 1.51027 1.19438 0.94458 0.78954 0.94247 1.21378 1.27636 1.06745 1.00780 0.92386 1.24911 0.95077 0.95581 0.98399 1.69931 1.33862 1.11506 1.37978 0.86481 0.79524 0.77402 0.83959 1.20573 1.21032 1.19854 1.17717 0.92784 0.86820 0.95614 1.21350 1.01073 0.94100 0.97507 1.20965 0.95110 0.96847 0.99776 1.21048 0.95919 0.99273 0.99000 1.20944 0.99521 0.93540 0.98900 1.21271 0.95152 0.97692 1.00376 1.22136 0.85447 0.92964 0.98558 0.86956 0.86783 0.88840 0.89978 0.87895 0.88217 0.88344 0.88837 0.94719 0.93281 0.92659 0.85967 0.86159 0.86430 0.86148 0.85852 0.89379 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 14.71 29.02 0.43 -0.36 16 2 C -0.18 -1.30 7.52 -100.66 -0.76 -2.06 16 3 C 0.14 1.18 8.59 -10.21 -0.09 1.10 16 4 N -0.65 -7.37 3.71 -191.63 -0.71 -8.08 16 5 C 0.55 7.89 8.08 -10.99 -0.09 7.80 16 6 O -0.54 -9.40 16.76 5.56 0.09 -9.31 16 7 C -0.12 -1.66 4.84 -27.88 -0.13 -1.80 16 8 C -0.12 -2.08 3.50 -27.88 -0.10 -2.17 16 9 C 0.52 10.83 7.57 -10.99 -0.08 10.75 16 10 O -0.53 -12.84 15.54 5.55 0.09 -12.75 16 11 N -0.56 -12.35 2.51 -114.74 -0.29 -12.63 16 12 C 0.25 6.53 5.15 -5.19 -0.03 6.50 16 13 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 14 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.16 3.10 4.43 -83.69 -0.37 2.73 16 22 C -0.12 -2.08 8.45 -39.39 -0.33 -2.41 16 23 C -0.11 -1.58 10.04 -39.61 -0.40 -1.97 16 24 C -0.13 -1.81 10.04 -39.55 -0.40 -2.21 16 25 C -0.11 -1.57 10.04 -39.61 -0.40 -1.96 16 26 C -0.13 -2.12 9.66 -39.39 -0.38 -2.50 16 27 C 0.13 1.05 8.37 -10.37 -0.09 0.96 16 28 H 0.11 0.49 8.06 -52.48 -0.42 0.07 16 29 H 0.11 0.51 8.06 -52.49 -0.42 0.08 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 1.63 6.86 -51.93 -0.36 1.27 16 35 H 0.09 1.51 7.82 -51.93 -0.41 1.11 16 36 H 0.03 0.94 7.84 -51.93 -0.41 0.53 16 37 H 0.05 1.43 7.36 -51.93 -0.38 1.05 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 2.10 7.55 -52.49 -0.40 1.71 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -35.17 389.15 -9.43 -44.60 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.56 Total: 2.47 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.63 Total: -1.29 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.26 Total: -46.58 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.17 -9.43 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898694890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.014 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds