Wall clock time and date at job start Tue Mar 31 2020 15:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38409 * 119.83951 * 2 1 4 4 C 1.37904 * 120.15754 * 179.70562 * 3 2 1 5 5 C 1.39743 * 119.83657 * 0.27230 * 4 3 2 6 6 C 1.47722 * 120.15220 * 180.02562 * 5 4 3 7 7 O 1.21545 * 120.00483 * 0.02562 * 6 5 4 8 8 C 1.47486 * 119.99535 * 180.02562 * 6 5 4 9 9 C 1.34390 * 119.99950 * 180.02562 * 8 6 5 10 10 C 1.47603 * 119.99747 * 179.97438 * 9 8 6 11 11 O 1.21534 * 120.00455 * 5.29505 * 10 9 8 12 12 N 1.34779 * 119.99667 * 185.29262 * 10 9 8 13 13 C 1.46965 * 120.59461 * 4.94417 * 12 10 9 14 14 C 1.53812 * 108.39889 * 124.75430 * 13 12 10 15 15 N 1.46972 * 108.57904 * 49.64149 * 14 13 12 16 16 C 1.36926 * 120.59478 * 124.66372 * 15 14 13 17 17 H 1.08005 * 120.00420 * 211.66575 * 16 15 14 18 18 C 1.38811 * 120.00196 * 31.67244 * 16 15 14 19 19 N 1.31615 * 119.99856 * 16.23253 * 18 16 15 20 20 Si 1.86800 * 120.00080 * 196.23253 * 18 16 15 21 21 H 1.48494 * 109.47293 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47176 * 120.00223 * 20 18 16 23 23 H 1.48503 * 109.46920 * 239.99773 * 20 18 16 24 24 C 1.46964 * 118.80752 * 304.64759 * 15 14 13 25 25 C 1.46962 * 120.59594 * 185.22163 * 12 10 9 26 26 C 1.39731 * 119.68714 * 0.02562 * 5 4 3 27 27 C 1.37901 * 119.84086 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47306 * 89.99877 * 1 2 3 29 29 H 1.09004 * 109.47386 * 210.00054 * 1 2 3 30 30 H 1.09003 * 109.47275 * 329.99957 * 1 2 3 31 31 H 1.07996 * 119.92153 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.08125 * 180.25337 * 4 3 2 33 33 H 1.08002 * 120.00278 * 359.97438 * 8 6 5 34 34 H 1.07992 * 119.99718 * 359.97438 * 9 8 6 35 35 H 1.08999 * 109.61253 * 244.54065 * 13 12 10 36 36 H 1.08999 * 109.60657 * 5.05023 * 13 12 10 37 37 H 1.09003 * 109.74292 * 289.85166 * 14 13 12 38 38 H 1.08998 * 109.53653 * 169.30252 * 14 13 12 39 39 H 0.97003 * 120.00627 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.60838 * 295.48028 * 24 15 14 41 41 H 1.09003 * 109.75005 * 175.05565 * 24 15 14 42 42 H 1.08999 * 109.61037 * 354.95365 * 25 12 10 43 43 H 1.08998 * 109.61112 * 115.45679 * 25 12 10 44 44 H 1.08003 * 120.07990 * 179.97438 * 26 5 4 45 45 H 1.08000 * 119.91861 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2082 0.0061 5 6 4.2767 -0.0001 0.0066 6 6 5.7539 0.0000 0.0137 7 8 6.3616 1.0526 0.0196 8 6 6.4912 -1.2773 0.0136 9 6 7.8351 -1.2773 0.0206 10 6 8.5731 -2.5556 0.0210 11 8 7.9698 -3.6057 -0.0820 12 7 9.9160 -2.5584 0.1357 13 6 10.6493 -1.3064 0.3693 14 6 11.5078 -1.4754 1.6343 15 7 12.2655 -2.7297 1.5220 16 6 13.6298 -2.7325 1.6384 17 1 14.2173 -3.4534 1.0892 18 6 14.2580 -1.8088 2.4625 19 7 13.5614 -1.1514 3.3651 20 14 16.0921 -1.4989 2.2904 21 1 16.6403 -2.3589 1.2110 22 1 16.3234 -0.0715 1.9524 23 1 16.7707 -1.8204 3.5715 24 6 11.5326 -3.9809 1.2827 25 6 10.6737 -3.8126 0.0233 26 6 3.5747 -1.2082 0.0003 27 6 2.1957 -1.2006 -0.0058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6518 2.1336 -0.0004 32 1 4.1108 2.1458 0.0103 33 1 5.9513 -2.2126 0.0087 34 1 8.3750 -0.3421 0.0259 35 1 11.2910 -1.0933 -0.4857 36 1 9.9421 -0.4894 0.5117 37 1 10.8644 -1.5142 2.5134 38 1 12.1989 -0.6370 1.7205 39 1 14.0003 -0.5062 3.9413 40 1 10.8910 -4.1980 2.1368 41 1 12.2381 -4.7991 1.1379 42 1 9.9826 -4.6511 -0.0628 43 1 11.3170 -3.7739 -0.8557 44 1 4.1108 -2.1458 0.0002 45 1 1.6519 -2.1337 -0.0103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900777598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:36 Heat of formation + Delta-G solvation = -12.393408 kcal Electronic energy + Delta-G solvation = -26510.581813 eV Core-core repulsion = 22686.784102 eV Total energy + Delta-G solvation = -3823.797711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41913 -40.91432 -39.45708 -38.52752 -35.67054 -34.52034 -33.81782 -33.12664 -32.02905 -31.81638 -29.21010 -28.59764 -26.38569 -25.24312 -24.43372 -23.64501 -23.08198 -21.89872 -20.65286 -19.76830 -19.32235 -18.22431 -17.75911 -17.02650 -16.85749 -16.49765 -16.34577 -16.18892 -15.73170 -15.60270 -15.48335 -15.30846 -15.13512 -14.95329 -14.72097 -14.53012 -14.43365 -14.07017 -13.57162 -13.31740 -13.03350 -12.98739 -12.86330 -12.70832 -12.59418 -12.52038 -12.22655 -12.07224 -11.97268 -11.91820 -11.68858 -11.23961 -11.05299 -10.90285 -10.62449 -9.98131 -9.90075 -9.70979 -8.65473 -7.91173 -5.42860 -0.85766 0.08137 0.40795 1.46899 1.49765 1.54624 1.59895 1.84800 2.16544 2.49414 2.77814 2.82734 3.24475 3.46617 3.55634 3.76740 3.84930 3.94076 4.03706 4.07506 4.18940 4.22576 4.34454 4.36580 4.42805 4.52736 4.59404 4.67082 4.74544 4.77939 4.78115 4.85327 4.86587 4.96960 5.06075 5.11354 5.18330 5.23581 5.32486 5.40065 5.46837 5.54409 5.58254 5.63419 5.93970 6.29056 6.34376 6.35583 6.95756 7.08736 7.75177 8.30934 9.14403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.002123 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.178676 B =13186.482216 C =13908.973127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.069 4.069 5 C -0.190 4.190 6 C 0.426 3.574 7 O -0.477 6.477 8 C -0.141 4.141 9 C -0.122 4.122 10 C 0.536 3.464 11 O -0.573 6.573 12 N -0.591 5.591 13 C 0.090 3.910 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.266 4.266 17 H 0.070 0.930 18 C -0.044 4.044 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.295 1.295 24 C 0.131 3.869 25 C 0.104 3.896 26 C -0.069 4.069 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.000 1.000 38 H 0.071 0.929 39 H 0.252 0.748 40 H 0.008 0.992 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.146 0.854 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 2.575 -9.173 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.157 4.157 4 C -0.088 4.088 5 C -0.191 4.191 6 C 0.308 3.692 7 O -0.356 6.356 8 C -0.162 4.162 9 C -0.143 4.143 10 C 0.326 3.674 11 O -0.455 6.455 12 N -0.322 5.322 13 C -0.034 4.034 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.396 4.396 17 H 0.088 0.912 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.215 1.215 23 H -0.222 1.222 24 C 0.005 3.995 25 C -0.019 4.019 26 C -0.087 4.087 27 C -0.156 4.156 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.018 0.982 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.164 0.836 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.146 2.663 -9.108 26.877 hybrid contribution 1.448 0.290 0.505 1.561 sum -23.697 2.953 -8.603 25.383 Atomic orbital electron populations 1.20963 0.88655 1.04281 1.03699 1.20650 0.98043 0.92801 0.93799 1.21314 0.93179 0.99286 1.01952 1.21497 0.95094 0.97382 0.94777 1.20296 0.92983 0.95739 1.10106 1.20936 0.89301 0.87819 0.71132 1.90601 1.71901 1.35187 1.37887 1.23921 0.94800 1.00049 0.97405 1.23592 0.95898 0.97847 0.96924 1.18814 0.82080 0.89587 0.76897 1.90699 1.68160 1.34024 1.52586 1.48057 1.05601 1.10069 1.68461 1.22708 0.95773 0.85096 0.99801 1.21026 0.92809 0.90144 0.92103 1.44220 1.02866 1.01832 1.84167 1.19520 0.82559 1.17224 1.20337 0.91234 1.25914 1.01984 1.01060 0.95096 1.70165 1.36911 1.29429 1.21328 0.85188 0.80236 0.77571 0.77280 1.18920 1.21466 1.22168 1.21383 0.94188 0.89778 0.94182 1.22129 0.94589 0.86087 0.99123 1.21732 0.95204 0.97304 0.94462 1.21396 0.93555 0.99191 1.01502 0.89554 0.90046 0.90245 0.83278 0.85330 0.82298 0.83272 0.90367 0.88052 0.98223 0.91103 0.93881 0.97361 0.90510 0.88910 0.90403 0.83623 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.00 71.24 0.71 0.00 16 2 C -0.05 -0.63 5.89 -19.78 -0.12 -0.75 16 3 C -0.14 -1.95 9.68 22.23 0.22 -1.73 16 4 C -0.07 -1.32 9.60 22.55 0.22 -1.10 16 5 C -0.19 -3.97 5.88 -20.05 -0.12 -4.09 16 6 C 0.43 10.70 7.10 27.22 0.19 10.89 16 7 O -0.48 -14.49 16.25 -3.86 -0.06 -14.55 16 8 C -0.14 -3.51 9.07 23.83 0.22 -3.29 16 9 C -0.12 -3.46 8.83 23.86 0.21 -3.24 16 10 C 0.54 18.17 7.65 86.71 0.66 18.84 16 11 O -0.57 -21.52 15.67 -3.82 -0.06 -21.58 16 12 N -0.59 -20.91 2.94 -820.90 -2.41 -23.33 16 13 C 0.09 3.18 6.51 86.56 0.56 3.75 16 14 C 0.17 7.67 5.50 86.56 0.48 8.15 16 15 N -0.61 -29.74 2.95 -697.34 -2.06 -31.79 16 16 C -0.27 -14.15 9.55 84.04 0.80 -13.35 16 17 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 18 C -0.04 -2.41 4.91 84.86 0.42 -1.99 16 19 N -0.93 -53.91 11.39 21.65 0.25 -53.66 16 20 Si 0.97 43.58 29.58 68.60 2.03 45.61 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 C 0.13 5.44 6.67 86.41 0.58 6.02 16 25 C 0.10 3.68 6.60 86.41 0.57 4.25 16 26 C -0.07 -1.13 9.46 22.55 0.21 -0.92 16 27 C -0.14 -1.78 9.68 22.23 0.22 -1.56 16 28 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 0.35 8.08 -2.38 -0.02 0.33 16 30 H 0.08 0.35 8.08 -2.39 -0.02 0.34 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.13 2.49 7.65 -2.91 -0.02 2.47 16 33 H 0.16 3.48 5.83 -2.91 -0.02 3.47 16 34 H 0.15 4.05 5.50 -2.91 -0.02 4.04 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 3.06 5.39 -2.39 -0.01 3.05 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.07 3.63 6.23 -2.39 -0.01 3.62 16 39 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 3.00 7.94 -2.39 -0.02 2.99 16 42 H 0.09 3.13 6.99 -2.39 -0.02 3.11 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.15 2.00 6.23 -2.91 -0.02 1.98 16 45 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -68.99 373.62 4.72 -64.27 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.01 Total: 15.18 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.03 Total: 19.87 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.22 Total: -108.78 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.12 Total: -36.14 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.99 4.72 -64.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900777598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.881 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds