Wall clock time and date at job start Tue Mar 31 2020 14:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38234 * 119.99956 * 2 1 4 4 C 1.38236 * 119.99992 * 180.02562 * 3 2 1 5 5 C 1.38239 * 119.99978 * 359.95888 * 4 3 2 6 6 C 1.50693 * 119.99927 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.54064 * 1.38892 * 6 5 4 8 8 C 1.54230 * 110.54145 * 124.44478 * 6 5 4 9 9 C 1.51321 * 103.55261 * 118.82993 * 8 6 5 10 10 O 1.21223 * 125.39119 * 179.89881 * 9 8 6 11 11 N 1.33875 * 109.20753 * 359.63110 * 9 8 6 12 12 C 1.46500 * 122.76263 * 180.24204 * 11 9 8 13 13 N 1.46503 * 109.46782 * 90.02479 * 12 11 9 14 14 C 1.36938 * 119.99795 * 90.00493 * 13 12 11 15 15 H 1.08004 * 119.99545 * 304.47161 * 14 13 12 16 16 C 1.38810 * 120.00322 * 124.47067 * 14 13 12 17 17 N 1.31616 * 120.00081 * 164.61871 * 16 14 13 18 18 Si 1.86799 * 119.99741 * 344.62771 * 16 14 13 19 19 H 1.48497 * 109.47348 * 91.85021 * 18 16 14 20 20 H 1.48507 * 109.46930 * 211.84872 * 18 16 14 21 21 H 1.48503 * 109.47224 * 331.84663 * 18 16 14 22 22 C 1.46494 * 120.00132 * 270.00056 * 13 12 11 23 23 C 1.52997 * 117.50006 * 183.07328 * 22 13 12 24 24 C 1.53000 * 117.50170 * 114.41365 * 22 13 12 25 25 C 1.33874 * 114.47540 * 0.24767 * 11 9 8 26 26 O 1.21228 * 125.39833 * 179.97438 * 25 11 9 27 27 C 1.38236 * 119.99894 * 0.26894 * 5 4 3 28 28 C 1.38236 * 119.99721 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46717 * 90.00116 * 1 2 3 30 30 H 1.08993 * 109.46922 * 210.00010 * 1 2 3 31 31 H 1.08997 * 109.46733 * 330.00122 * 1 2 3 32 32 H 1.07999 * 120.00064 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99985 * 179.97438 * 4 3 2 34 34 H 1.08998 * 110.71367 * 0.26269 * 8 6 5 35 35 H 1.09005 * 110.50024 * 237.29258 * 8 6 5 36 36 H 1.08995 * 109.47192 * 210.02938 * 12 11 9 37 37 H 1.08998 * 109.46938 * 330.02777 * 12 11 9 38 38 H 0.97005 * 119.99918 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.55034 * 328.74008 * 22 13 12 40 40 H 1.09000 * 117.50002 * 359.97438 * 23 22 13 41 41 H 1.08997 * 117.50286 * 145.01767 * 23 22 13 42 42 H 1.08994 * 117.49825 * 214.98090 * 24 22 13 43 43 H 1.08998 * 117.49387 * 359.97307 * 24 22 13 44 44 H 1.07996 * 119.99986 * 179.73212 * 27 5 4 45 45 H 1.07994 * 120.00523 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0002 6 6 5.7787 0.0000 -0.0002 7 1 6.1612 1.0204 0.0243 8 6 6.3199 -0.8166 1.1910 9 6 7.1086 -1.9265 0.5310 10 8 7.7085 -2.8040 1.1138 11 7 7.0341 -1.7893 -0.7986 12 6 7.6895 -2.7120 -1.7289 13 7 6.7734 -3.8071 -2.0571 14 6 5.9258 -3.6935 -3.1265 15 1 5.2482 -2.8549 -3.1918 16 6 5.9373 -4.6559 -4.1268 17 7 4.9421 -4.7248 -4.9852 18 14 7.3654 -5.8533 -4.2542 19 1 7.0544 -7.0792 -3.4760 20 1 7.5841 -6.2132 -5.6783 21 1 8.5930 -5.2194 -3.7097 22 6 6.7642 -5.0238 -1.2412 23 6 5.8368 -6.1599 -1.6773 24 6 5.4973 -5.3269 -0.4388 25 6 6.3113 -0.7395 -1.2082 26 8 6.1149 -0.4300 -2.3637 27 6 3.5806 -1.1972 -0.0050 28 6 2.1982 -1.1972 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6583 2.1324 -0.0004 33 1 4.1206 2.1325 -0.0010 34 1 5.5005 -1.2268 1.7812 35 1 6.9705 -0.2006 1.8120 36 1 7.9593 -2.1784 -2.6402 37 1 8.5889 -3.1172 -1.2654 38 1 4.9504 -5.3972 -5.6844 39 1 7.7202 -5.2978 -0.7949 40 1 5.2332 -6.0018 -2.5710 41 1 6.1824 -7.1812 -1.5176 42 1 5.6197 -5.8005 0.5352 43 1 4.6707 -4.6207 -0.5176 44 1 4.1206 -2.1324 -0.0091 45 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902076960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:22 Heat of formation + Delta-G solvation = -2.011904 kcal Electronic energy + Delta-G solvation = -29137.556129 eV Core-core repulsion = 25314.208593 eV Total energy + Delta-G solvation = -3823.347536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.89964 -40.26128 -39.42075 -39.06788 -36.81555 -35.72270 -34.58212 -33.48962 -31.93260 -31.79243 -28.45008 -27.57576 -26.10337 -25.23826 -23.86410 -23.35697 -23.14745 -21.88187 -21.68672 -20.44467 -18.92333 -18.28466 -18.19918 -17.45819 -16.93787 -16.71891 -16.47652 -16.07550 -15.95749 -15.70724 -15.48408 -15.16657 -14.96892 -14.72043 -14.57374 -14.36673 -14.28295 -13.97397 -13.76130 -13.72281 -13.21284 -13.01775 -12.83075 -12.69816 -12.60179 -12.46192 -12.25870 -11.98215 -11.91529 -11.84858 -11.66003 -11.40698 -11.06715 -10.93130 -10.87380 -10.48817 -9.84022 -9.44216 -8.69621 -8.24727 -5.98052 0.28692 0.48035 0.65268 1.38020 1.40610 1.52553 1.66910 1.95948 2.39754 2.72780 2.92446 3.03417 3.23601 3.28338 3.35629 3.53482 3.71625 3.92244 4.05770 4.09145 4.11707 4.15258 4.26634 4.27118 4.34324 4.44702 4.52318 4.52664 4.72307 4.78806 4.79573 4.82617 4.83715 4.85427 4.87691 4.93859 5.14330 5.19087 5.26804 5.44231 5.47859 5.59034 5.69310 5.87259 6.04707 6.09582 6.22498 6.49611 6.88672 6.93288 7.41263 7.88705 8.88772 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.004865 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.599444 B = 5754.225418 C = 6560.668606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.090 4.090 6 C -0.072 4.072 7 H 0.166 0.834 8 C -0.136 4.136 9 C 0.525 3.475 10 O -0.514 6.514 11 N -0.583 5.583 12 C 0.339 3.661 13 N -0.567 5.567 14 C -0.275 4.275 15 H 0.020 0.980 16 C 0.018 3.982 17 N -0.939 5.939 18 Si 0.945 3.055 19 H -0.247 1.247 20 H -0.311 1.311 21 H -0.261 1.261 22 C 0.098 3.902 23 C -0.201 4.201 24 C -0.188 4.188 25 C 0.526 3.474 26 O -0.514 6.514 27 C -0.119 4.119 28 C -0.136 4.136 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.125 0.875 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.266 0.734 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 11.673 16.479 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.090 4.090 6 C -0.093 4.093 7 H 0.183 0.817 8 C -0.175 4.175 9 C 0.316 3.684 10 O -0.388 6.388 11 N -0.329 5.329 12 C 0.132 3.868 13 N -0.288 5.288 14 C -0.404 4.404 15 H 0.038 0.962 16 C -0.182 4.182 17 N -0.580 5.580 18 Si 0.770 3.230 19 H -0.171 1.171 20 H -0.239 1.239 21 H -0.186 1.186 22 C -0.008 4.008 23 C -0.239 4.239 24 C -0.228 4.228 25 C 0.315 3.685 26 O -0.387 6.387 27 C -0.138 4.138 28 C -0.154 4.154 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.143 0.857 35 H 0.181 0.819 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.303 11.249 15.955 19.565 hybrid contribution 0.178 -1.169 -1.128 1.634 sum -1.125 10.079 14.827 17.964 Atomic orbital electron populations 1.20848 0.89365 1.03938 1.02799 1.20301 0.97624 0.92850 0.98242 1.21385 0.94185 0.98277 1.00294 1.21353 0.94642 0.97480 0.97998 1.19282 0.92660 0.93932 1.03133 1.21126 0.93424 1.03456 0.91298 0.81660 1.22727 1.01847 0.95178 0.97728 1.21371 0.79143 0.86107 0.81807 1.90695 1.43150 1.36585 1.68384 1.48233 1.47202 1.27190 1.10292 1.21268 0.89378 0.84391 0.91780 1.44051 1.41898 1.13915 1.28960 1.18133 1.14674 1.09555 0.98075 0.96226 1.26375 0.98114 0.99683 0.94003 1.69995 1.32261 1.36510 1.19227 0.85855 0.81037 0.80574 0.75525 1.17092 1.23934 1.18554 1.21612 0.93486 0.88692 0.97031 1.23426 1.05175 0.95682 0.99607 1.23181 1.01212 1.03280 0.95093 1.21322 0.76009 0.80425 0.90762 1.90758 1.56496 1.69018 1.22430 1.20977 0.95170 0.97365 1.00255 1.21137 0.93855 0.98705 1.01734 0.91123 0.91225 0.89291 0.82849 0.82451 0.85730 0.81898 0.90488 0.88525 0.92452 0.86729 0.89864 0.87885 0.87686 0.92121 0.89070 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.01 71.24 0.71 -1.24 16 2 C -0.09 -2.12 5.88 -19.86 -0.12 -2.24 16 3 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 4 C -0.10 -2.02 9.68 22.27 0.22 -1.80 16 5 C -0.09 -2.34 4.81 -19.87 -0.10 -2.43 16 6 C -0.07 -1.67 3.33 -11.68 -0.04 -1.71 16 7 H 0.17 2.45 7.94 -2.39 -0.02 2.43 16 8 C -0.14 -2.67 6.38 30.46 0.19 -2.47 16 9 C 0.53 15.90 8.08 87.99 0.71 16.62 16 10 O -0.51 -17.88 17.48 -2.85 -0.05 -17.93 16 11 N -0.58 -20.82 2.79 -767.66 -2.14 -22.96 16 12 C 0.34 13.96 6.12 170.96 1.05 15.01 16 13 N -0.57 -26.99 2.29 -689.70 -1.58 -28.56 16 14 C -0.27 -15.87 9.17 84.03 0.77 -15.10 16 15 H 0.02 1.36 7.99 -2.91 -0.02 1.34 16 16 C 0.02 1.02 3.73 84.86 0.32 1.33 16 17 N -0.94 -58.94 13.97 21.65 0.30 -58.64 16 18 Si 0.94 45.74 24.89 68.60 1.71 47.45 16 19 H -0.25 -10.96 5.80 99.48 0.58 -10.39 16 20 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 21 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 22 C 0.10 4.18 5.16 44.99 0.23 4.41 16 23 C -0.20 -8.71 6.69 30.62 0.20 -8.51 16 24 C -0.19 -7.55 10.36 30.62 0.32 -7.23 16 25 C 0.53 18.84 7.03 87.99 0.62 19.46 16 26 O -0.51 -23.69 17.41 -2.87 -0.05 -23.74 16 27 C -0.12 -3.78 8.52 22.27 0.19 -3.59 16 28 C -0.14 -3.97 9.70 22.27 0.22 -3.76 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 31 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.16 2.15 7.98 -2.91 -0.02 2.13 16 34 H 0.12 2.38 7.27 -2.39 -0.02 2.36 16 35 H 0.16 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.08 3.39 7.73 -2.39 -0.02 3.37 16 37 H 0.10 3.54 7.76 -2.39 -0.02 3.52 16 38 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 39 H 0.12 4.41 8.14 -2.38 -0.02 4.39 16 40 H 0.08 4.33 5.08 -2.39 -0.01 4.31 16 41 H 0.10 3.89 7.86 -2.39 -0.02 3.88 16 42 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.09 3.36 7.98 -2.91 -0.02 3.33 16 45 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -78.36 372.10 4.76 -73.60 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.86 Total: 26.32 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.71 Total: 4.46 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.42 Total: -110.16 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.10 Total: -41.67 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.71 Total: 47.45 kcal Total: -78.36 4.76 -73.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902076960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.584 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds