Wall clock time and date at job start Tue Mar 31 2020 15:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.35865 * 119.69660 * 2 1 4 4 H 0.97003 * 119.26917 * 359.97438 * 3 2 1 5 5 C 1.35463 * 121.46695 * 180.28691 * 3 2 1 6 6 C 1.35191 * 120.78652 * 359.73696 * 5 3 2 7 7 C 1.50702 * 120.33493 * 179.97438 * 6 5 3 8 8 N 1.46507 * 109.46775 * 260.02041 * 7 6 5 9 9 C 1.46498 * 120.00040 * 270.00027 * 8 7 6 10 10 C 1.36940 * 119.99829 * 90.00495 * 8 7 6 11 11 H 1.07997 * 119.99971 * 22.26177 * 10 8 7 12 12 C 1.38807 * 119.99729 * 202.27000 * 10 8 7 13 13 N 1.31616 * 120.00194 * 11.30260 * 12 10 8 14 14 Si 1.86809 * 119.99689 * 191.30582 * 12 10 8 15 15 H 1.48492 * 109.47054 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46957 * 119.99760 * 14 12 10 17 17 H 1.48498 * 109.46918 * 239.99884 * 14 12 10 18 18 C 1.41276 * 119.32891 * 0.02562 * 6 5 3 19 19 O 1.22294 * 120.68201 * 180.02562 * 18 6 5 20 20 C 1.35430 * 119.69592 * 179.76337 * 2 1 3 21 21 O 1.36102 * 120.41527 * 0.02562 * 20 2 1 22 22 C 1.42897 * 116.99971 * 269.71929 * 21 20 2 23 23 C 1.50699 * 109.47159 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00546 * 269.73297 * 23 22 21 25 25 C 1.38233 * 120.00387 * 179.76326 * 24 23 22 26 26 C 1.38235 * 119.99807 * 0.48644 * 25 24 23 27 27 C 1.38239 * 120.00029 * 359.78571 * 26 25 24 28 28 C 1.38233 * 119.99705 * 359.95723 * 27 26 25 29 29 H 1.08998 * 109.47109 * 270.23688 * 1 2 3 30 30 H 1.09000 * 109.46710 * 30.23421 * 1 2 3 31 31 H 1.09004 * 109.46602 * 150.23362 * 1 2 3 32 32 H 1.07996 * 119.60707 * 179.71941 * 5 3 2 33 33 H 1.08998 * 109.47188 * 20.02114 * 7 6 5 34 34 H 1.09000 * 109.47490 * 140.02581 * 7 6 5 35 35 H 1.08995 * 109.46744 * 94.34082 * 9 8 7 36 36 H 1.09001 * 109.47118 * 214.33704 * 9 8 7 37 37 H 1.08993 * 109.47460 * 334.33594 * 9 8 7 38 38 H 0.97001 * 119.99986 * 180.02562 * 13 12 10 39 39 H 1.08992 * 109.47361 * 299.99944 * 22 21 20 40 40 H 1.08999 * 109.47083 * 60.00336 * 22 21 20 41 41 H 1.08003 * 119.99368 * 359.97438 * 24 23 22 42 42 H 1.07999 * 120.00095 * 180.24594 * 25 24 23 43 43 H 1.08002 * 119.99979 * 179.76854 * 26 25 24 44 44 H 1.08000 * 119.99931 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99759 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1802 1.1802 0.0000 4 1 1.6801 2.0114 -0.0004 5 6 3.5341 1.2221 -0.0058 6 6 4.2617 0.0826 -0.0064 7 6 5.7675 0.1410 -0.0135 8 7 6.2585 -0.0824 -1.3756 9 6 6.5534 -1.4422 -1.8341 10 6 6.4418 0.9798 -2.2202 11 1 6.5796 1.9724 -1.8175 12 6 6.4503 0.7807 -3.5939 13 7 6.0647 -0.3740 -4.0940 14 14 7.0091 2.1520 -4.7329 15 1 7.3884 3.3405 -3.9277 16 1 8.1807 1.6935 -5.5218 17 1 5.9018 2.5119 -5.6546 18 6 3.5959 -1.1635 -0.0016 19 8 4.2295 -2.2095 -0.0016 20 6 2.1780 -1.1764 0.0049 21 8 1.4998 -2.3564 0.0092 22 6 1.1814 -2.9170 1.2845 23 6 0.4356 -4.2122 1.0918 24 6 -0.9444 -4.2101 1.0124 25 6 -1.6282 -5.3976 0.8307 26 6 -0.9325 -6.5886 0.7387 27 6 0.4472 -6.5915 0.8238 28 6 1.1313 -5.4033 1.0001 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 4.0384 2.1770 -0.0102 33 1 6.0948 1.1208 0.3345 34 1 6.1642 -0.6302 0.6467 35 1 5.6830 -1.8488 -2.3489 36 1 7.4020 -1.4191 -2.5179 37 1 6.7948 -2.0704 -0.9768 38 1 6.0710 -0.5132 -5.0539 39 1 2.1010 -3.1058 1.8382 40 1 0.5579 -2.2188 1.8429 41 1 -1.4882 -3.2800 1.0888 42 1 -2.7062 -5.3954 0.7647 43 1 -1.4670 -7.5169 0.6005 44 1 0.9907 -7.5220 0.7522 45 1 2.2092 -5.4056 1.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902098032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:45 Heat of formation + Delta-G solvation = 14.716223 kcal Electronic energy + Delta-G solvation = -27839.806550 eV Core-core repulsion = 24017.184400 eV Total energy + Delta-G solvation = -3822.622150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70987 -39.32282 -37.62517 -37.06737 -35.26722 -32.78090 -32.04951 -31.13242 -30.94746 -30.06332 -28.01221 -26.05846 -25.68246 -25.13729 -22.64257 -22.54372 -21.76372 -21.36124 -20.59277 -17.97460 -17.47103 -17.00243 -16.58600 -16.35154 -15.65425 -15.32608 -15.28776 -14.91363 -14.65194 -13.88381 -13.79428 -13.55101 -13.45123 -13.30300 -13.11394 -12.97227 -12.77409 -12.69328 -12.49387 -12.27718 -12.12472 -11.98686 -11.31577 -11.12350 -11.04060 -10.94595 -10.83909 -10.55736 -10.13387 -9.98936 -9.89864 -9.84563 -9.02124 -8.96803 -8.61167 -8.49633 -8.41179 -7.25828 -6.63580 -5.64436 -3.08196 1.13975 1.35469 1.60637 1.95512 3.13450 3.38352 3.44338 3.47013 3.60413 4.12658 4.38956 4.54567 4.58396 4.76548 4.83194 4.93708 5.02717 5.09035 5.22325 5.27647 5.33466 5.39927 5.48679 5.56291 5.61041 5.67549 5.69006 5.85536 5.91763 5.92484 6.00313 6.09449 6.37076 6.41836 6.44263 6.58505 6.67022 6.77360 6.92368 6.94170 7.18043 7.35336 7.37120 7.61524 7.77858 7.84218 8.09801 8.46785 8.87686 9.30690 9.95373 10.47416 11.38082 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.003140 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.945551 B = 8915.689939 C = 9570.967885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.137 3.863 3 N -0.578 5.578 4 H 0.412 0.588 5 C 0.102 3.898 6 C -0.228 4.228 7 C 0.207 3.793 8 N -0.586 5.586 9 C 0.173 3.827 10 C -0.252 4.252 11 H 0.069 0.931 12 C 0.001 3.999 13 N -0.897 5.897 14 Si 0.902 3.098 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.292 1.292 18 C 0.392 3.608 19 O -0.504 6.504 20 C -0.085 4.085 21 O -0.296 6.296 22 C 0.101 3.899 23 C -0.083 4.083 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.092 4.092 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.038 0.962 37 H 0.003 0.997 38 H 0.252 0.748 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 -1.677 13.521 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.026 3.974 3 N -0.187 5.187 4 H 0.247 0.753 5 C -0.024 4.024 6 C -0.238 4.238 7 C 0.079 3.921 8 N -0.305 5.305 9 C 0.028 3.972 10 C -0.382 4.382 11 H 0.087 0.913 12 C -0.198 4.198 13 N -0.540 5.540 14 Si 0.733 3.267 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.219 1.219 18 C 0.282 3.718 19 O -0.389 6.389 20 C -0.137 4.137 21 O -0.211 6.211 22 C 0.026 3.974 23 C -0.083 4.083 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.110 4.110 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.177 0.823 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.532 -2.448 13.159 21.271 hybrid contribution -0.171 1.274 -0.921 1.582 sum -16.703 -1.174 12.238 20.740 Atomic orbital electron populations 1.20924 0.88693 1.04736 1.03320 1.20523 0.94338 0.86114 0.96415 1.40872 1.06342 1.07300 1.64223 0.75266 1.21499 0.81160 1.00624 0.99157 1.22404 1.01299 0.92577 1.07533 1.19552 0.85171 0.98876 0.88549 1.44211 1.72028 1.04444 1.09865 1.20734 0.99211 0.83061 0.94176 1.19282 1.42720 0.89000 0.87225 0.91334 1.25117 1.00518 0.96978 0.97210 1.70141 1.49596 1.23056 1.11252 0.86219 0.78003 0.81473 0.81038 1.20340 1.21574 1.21892 1.17473 0.87578 0.89980 0.76772 1.90753 1.69342 1.34693 1.44101 1.19501 0.92615 0.84438 1.17156 1.86257 1.73966 1.34182 1.26724 1.21505 0.97967 0.91454 0.86426 1.19621 0.93538 0.94100 1.01086 1.21029 0.93556 0.98157 0.99188 1.21094 0.99747 0.92629 1.01099 1.21173 0.94461 0.98038 0.99945 1.21176 0.94439 0.98122 1.00433 1.21214 1.00490 0.91923 0.97371 0.90206 0.90783 0.88728 0.82310 0.93257 0.92909 0.95318 0.94325 0.97815 0.93787 0.92076 0.93002 0.86124 0.86118 0.86200 0.85908 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.84 36.01 0.35 -0.76 16 2 C 0.14 1.91 6.82 -81.80 -0.56 1.35 16 3 N -0.58 -7.10 5.25 -9.22 -0.05 -7.15 16 4 H 0.41 3.18 8.77 -40.82 -0.36 2.83 16 5 C 0.10 1.59 10.79 -17.03 -0.18 1.41 16 6 C -0.23 -4.66 5.47 -104.55 -0.57 -5.23 16 7 C 0.21 4.57 5.55 -5.19 -0.03 4.54 16 8 N -0.59 -15.71 2.91 -182.50 -0.53 -16.24 16 9 C 0.17 4.86 8.19 59.85 0.49 5.35 16 10 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 11 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 12 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 13 N -0.90 -27.45 10.58 55.49 0.59 -26.86 16 14 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 C 0.39 8.75 6.76 -37.07 -0.25 8.50 16 19 O -0.50 -13.03 16.25 -10.92 -0.18 -13.21 16 20 C -0.09 -1.58 5.71 -39.22 -0.22 -1.80 16 21 O -0.30 -5.36 8.84 -35.63 -0.31 -5.67 16 22 C 0.10 1.46 6.19 36.00 0.22 1.68 16 23 C -0.08 -1.12 5.51 -104.62 -0.58 -1.69 16 24 C -0.10 -1.13 9.70 -39.59 -0.38 -1.52 16 25 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 27 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 28 C -0.09 -1.23 9.70 -39.58 -0.38 -1.62 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.99 7.46 -51.93 -0.39 0.61 16 32 H 0.16 2.06 8.00 -52.49 -0.42 1.64 16 33 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 34 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 35 H 0.03 0.90 7.41 -51.93 -0.38 0.51 16 36 H 0.04 1.12 7.19 -51.93 -0.37 0.75 16 37 H 0.00 0.09 7.84 -51.93 -0.41 -0.32 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -37.85 381.00 -9.78 -47.63 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.48 Total: 0.89 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.52 Total: -2.08 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.01 Total: -50.25 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.49 Total: -18.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.85 -9.78 -47.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902098032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.346 kcal (2) G-P(sol) polarization free energy of solvation -37.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds