Wall clock time and date at job start Tue Mar 31 2020 15:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.35865 * 119.69660 * 2 1 4 4 H 0.97003 * 119.26917 * 359.97438 * 3 2 1 5 5 C 1.35463 * 121.46695 * 180.28691 * 3 2 1 6 6 C 1.35191 * 120.78652 * 359.73696 * 5 3 2 7 7 C 1.50702 * 120.33493 * 179.97438 * 6 5 3 8 8 N 1.46507 * 109.46775 * 260.02041 * 7 6 5 9 9 C 1.46498 * 120.00040 * 270.00027 * 8 7 6 10 10 C 1.36940 * 119.99829 * 90.00495 * 8 7 6 11 11 H 1.07997 * 119.99971 * 22.26177 * 10 8 7 12 12 C 1.38807 * 119.99729 * 202.27000 * 10 8 7 13 13 N 1.31616 * 120.00194 * 11.30260 * 12 10 8 14 14 Si 1.86809 * 119.99689 * 191.30582 * 12 10 8 15 15 H 1.48492 * 109.47054 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46957 * 119.99760 * 14 12 10 17 17 H 1.48498 * 109.46918 * 239.99884 * 14 12 10 18 18 C 1.41276 * 119.32891 * 0.02562 * 6 5 3 19 19 O 1.22294 * 120.68201 * 180.02562 * 18 6 5 20 20 C 1.35430 * 119.69592 * 179.76337 * 2 1 3 21 21 O 1.36102 * 120.41527 * 0.02562 * 20 2 1 22 22 C 1.42897 * 116.99971 * 269.71929 * 21 20 2 23 23 C 1.50699 * 109.47159 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00546 * 269.73297 * 23 22 21 25 25 C 1.38233 * 120.00387 * 179.76326 * 24 23 22 26 26 C 1.38235 * 119.99807 * 0.48644 * 25 24 23 27 27 C 1.38239 * 120.00029 * 359.78571 * 26 25 24 28 28 C 1.38233 * 119.99705 * 359.95723 * 27 26 25 29 29 H 1.08998 * 109.47109 * 270.23688 * 1 2 3 30 30 H 1.09000 * 109.46710 * 30.23421 * 1 2 3 31 31 H 1.09004 * 109.46602 * 150.23362 * 1 2 3 32 32 H 1.07996 * 119.60707 * 179.71941 * 5 3 2 33 33 H 1.08998 * 109.47188 * 20.02114 * 7 6 5 34 34 H 1.09000 * 109.47490 * 140.02581 * 7 6 5 35 35 H 1.08995 * 109.46744 * 94.34082 * 9 8 7 36 36 H 1.09001 * 109.47118 * 214.33704 * 9 8 7 37 37 H 1.08993 * 109.47460 * 334.33594 * 9 8 7 38 38 H 0.97001 * 119.99986 * 180.02562 * 13 12 10 39 39 H 1.08992 * 109.47361 * 299.99944 * 22 21 20 40 40 H 1.08999 * 109.47083 * 60.00336 * 22 21 20 41 41 H 1.08003 * 119.99368 * 359.97438 * 24 23 22 42 42 H 1.07999 * 120.00095 * 180.24594 * 25 24 23 43 43 H 1.08002 * 119.99979 * 179.76854 * 26 25 24 44 44 H 1.08000 * 119.99931 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99759 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1802 1.1802 0.0000 4 1 1.6801 2.0114 -0.0004 5 6 3.5341 1.2221 -0.0058 6 6 4.2617 0.0826 -0.0064 7 6 5.7675 0.1410 -0.0135 8 7 6.2585 -0.0824 -1.3756 9 6 6.5534 -1.4422 -1.8341 10 6 6.4418 0.9798 -2.2202 11 1 6.5796 1.9724 -1.8175 12 6 6.4503 0.7807 -3.5939 13 7 6.0647 -0.3740 -4.0940 14 14 7.0091 2.1520 -4.7329 15 1 7.3884 3.3405 -3.9277 16 1 8.1807 1.6935 -5.5218 17 1 5.9018 2.5119 -5.6546 18 6 3.5959 -1.1635 -0.0016 19 8 4.2295 -2.2095 -0.0016 20 6 2.1780 -1.1764 0.0049 21 8 1.4998 -2.3564 0.0092 22 6 1.1814 -2.9170 1.2845 23 6 0.4356 -4.2122 1.0918 24 6 -0.9444 -4.2101 1.0124 25 6 -1.6282 -5.3976 0.8307 26 6 -0.9325 -6.5886 0.7387 27 6 0.4472 -6.5915 0.8238 28 6 1.1313 -5.4033 1.0001 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 4.0384 2.1770 -0.0102 33 1 6.0948 1.1208 0.3345 34 1 6.1642 -0.6302 0.6467 35 1 5.6830 -1.8488 -2.3489 36 1 7.4020 -1.4191 -2.5179 37 1 6.7948 -2.0704 -0.9768 38 1 6.0710 -0.5132 -5.0539 39 1 2.1010 -3.1058 1.8382 40 1 0.5579 -2.2188 1.8429 41 1 -1.4882 -3.2800 1.0888 42 1 -2.7062 -5.3954 0.7647 43 1 -1.4670 -7.5169 0.6005 44 1 0.9907 -7.5220 0.7522 45 1 2.2092 -5.4056 1.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902098032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:44 Heat of formation + Delta-G solvation = -9.727506 kcal Electronic energy + Delta-G solvation = -27840.866510 eV Core-core repulsion = 24017.184400 eV Total energy + Delta-G solvation = -3823.682109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05789 -40.27108 -38.88021 -38.59494 -37.20046 -34.23405 -33.28588 -32.64274 -31.82196 -31.59483 -29.33967 -27.91068 -27.15474 -26.68984 -24.06594 -23.50483 -23.31844 -22.44209 -22.14217 -19.38221 -18.92086 -18.40375 -17.93242 -17.69505 -16.87521 -16.75952 -16.60576 -16.32712 -15.95731 -15.40472 -15.25557 -14.91542 -14.80146 -14.74947 -14.28942 -14.18830 -14.16080 -13.80517 -13.72469 -13.37261 -13.28688 -13.19222 -12.99991 -12.94673 -12.79785 -12.53595 -12.11978 -11.99992 -11.96693 -11.93431 -11.82496 -11.33254 -10.64737 -10.09878 -9.96107 -9.84792 -9.73866 -8.87667 -8.63060 -7.76581 -5.26674 0.11124 0.43450 0.47371 0.54426 1.46792 1.50146 1.60359 1.97796 2.49498 2.57573 2.85902 3.14793 3.38009 3.54537 3.83220 3.86081 3.92021 4.01385 4.11164 4.18310 4.25186 4.27037 4.33688 4.38870 4.47607 4.63436 4.65813 4.71132 4.73614 4.85671 4.94584 5.03468 5.04597 5.13037 5.14548 5.20994 5.28872 5.50704 5.52212 5.57754 5.66112 5.66581 5.71627 5.96023 6.07783 6.30084 6.33789 6.52080 7.14707 7.37676 7.87503 8.40490 9.28050 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.003140 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.945551 B = 8915.689939 C = 9570.967885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.169 3.831 3 N -0.550 5.550 4 H 0.444 0.556 5 C 0.154 3.846 6 C -0.284 4.284 7 C 0.209 3.791 8 N -0.605 5.605 9 C 0.204 3.796 10 C -0.252 4.252 11 H 0.092 0.908 12 C -0.065 4.065 13 N -0.947 5.947 14 Si 0.977 3.023 15 H -0.252 1.252 16 H -0.300 1.300 17 H -0.295 1.295 18 C 0.361 3.639 19 O -0.579 6.579 20 C -0.126 4.126 21 O -0.317 6.317 22 C 0.105 3.895 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.124 4.124 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.082 0.918 34 H 0.033 0.967 35 H -0.016 1.016 36 H 0.016 0.984 37 H 0.004 0.996 38 H 0.243 0.757 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.136 0.864 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.096 2.229 14.565 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.056 3.944 3 N -0.160 5.160 4 H 0.286 0.714 5 C 0.025 3.975 6 C -0.293 4.293 7 C 0.083 3.917 8 N -0.326 5.326 9 C 0.058 3.942 10 C -0.382 4.382 11 H 0.110 0.890 12 C -0.259 4.259 13 N -0.594 5.594 14 Si 0.805 3.195 15 H -0.176 1.176 16 H -0.227 1.227 17 H -0.222 1.222 18 C 0.257 3.743 19 O -0.470 6.470 20 C -0.176 4.176 21 O -0.233 6.233 22 C 0.031 3.969 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.151 4.151 28 C -0.143 4.143 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.219 0.781 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.002 0.998 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.166 0.834 42 H 0.174 0.826 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.785 1.553 14.277 25.264 hybrid contribution 0.931 0.122 -1.031 1.394 sum -19.854 1.675 13.246 23.926 Atomic orbital electron populations 1.21135 0.84265 1.06075 1.05927 1.21024 0.96801 0.84746 0.91863 1.41034 1.05575 1.08538 1.60829 0.71406 1.21939 0.82334 1.00484 0.92771 1.22025 1.00551 0.93769 1.12938 1.19532 0.86791 0.99697 0.85673 1.44310 1.73943 1.03189 1.11176 1.20191 0.96193 0.84770 0.93053 1.19770 1.41304 0.89685 0.87457 0.89043 1.26015 1.01419 0.99368 0.99054 1.70387 1.52413 1.25834 1.10771 0.85055 0.76678 0.79131 0.78662 1.17572 1.22727 1.22184 1.18237 0.89727 0.90048 0.76280 1.90702 1.70849 1.36638 1.48859 1.19421 0.91484 0.86395 1.20316 1.86205 1.73552 1.34739 1.28796 1.21567 0.97302 0.92800 0.85278 1.19713 0.94891 0.93242 1.02875 1.21331 0.92334 1.00011 0.98257 1.21551 1.01494 0.91878 0.99308 1.21584 0.93744 0.99701 0.98424 1.21401 0.95621 0.97752 1.00345 1.21251 0.99678 0.93630 0.99720 0.86688 0.87065 0.89714 0.78075 0.89958 0.94836 0.99812 0.96548 0.97747 0.94784 0.95185 0.89663 0.83443 0.82626 0.83150 0.84627 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.84 71.24 0.70 -0.85 16 2 C 0.17 4.13 6.82 41.29 0.28 4.41 16 3 N -0.55 -10.70 5.25 -183.08 -0.96 -11.66 16 4 H 0.44 3.60 8.77 -92.71 -0.81 2.78 16 5 C 0.15 4.22 10.79 83.43 0.90 5.12 16 6 C -0.28 -11.66 5.47 -19.82 -0.11 -11.76 16 7 C 0.21 9.46 5.55 85.63 0.48 9.93 16 8 N -0.60 -33.58 2.91 -731.31 -2.13 -35.71 16 9 C 0.20 12.45 8.19 127.77 1.05 13.49 16 10 C -0.25 -13.98 9.67 84.03 0.81 -13.17 16 11 H 0.09 4.54 7.84 -2.91 -0.02 4.52 16 12 C -0.06 -3.75 5.13 84.86 0.44 -3.31 16 13 N -0.95 -60.91 10.58 21.65 0.23 -60.68 16 14 Si 0.98 45.50 29.57 68.60 2.03 47.53 16 15 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 18 C 0.36 17.13 6.76 23.90 0.16 17.29 16 19 O -0.58 -33.41 16.25 8.60 0.14 -33.27 16 20 C -0.13 -4.73 5.71 22.50 0.13 -4.61 16 21 O -0.32 -12.02 8.84 -79.82 -0.71 -12.73 16 22 C 0.10 3.17 6.19 71.24 0.44 3.61 16 23 C -0.11 -2.98 5.51 -19.87 -0.11 -3.09 16 24 C -0.10 -2.08 9.70 22.27 0.22 -1.87 16 25 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 26 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 27 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 28 C -0.12 -3.69 9.70 22.27 0.22 -3.47 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.44 7.46 -2.39 -0.02 1.42 16 32 H 0.20 3.93 8.00 -2.91 -0.02 3.90 16 33 H 0.08 3.07 7.87 -2.39 -0.02 3.05 16 34 H 0.03 1.59 7.66 -2.39 -0.02 1.57 16 35 H -0.02 -1.15 7.41 -2.39 -0.02 -1.17 16 36 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 37 H 0.00 0.24 7.84 -2.39 -0.02 0.22 16 38 H 0.24 15.19 8.31 -92.71 -0.77 14.41 16 39 H 0.03 1.05 8.09 -2.39 -0.02 1.03 16 40 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.10 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -95.44 381.00 5.06 -90.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.19 Total: 11.15 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.27 Total: 4.98 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -2.86 Total: -108.05 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.57 Total: -46.00 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -95.44 5.06 -90.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902098032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.657 kcal (2) G-P(sol) polarization free energy of solvation -95.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds