Wall clock time and date at job start Tue Mar 31 2020 14:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 120.07935 * 2 1 4 4 C 1.38340 * 120.14908 * 180.30156 * 3 2 1 5 5 C 1.38388 * 120.29870 * 359.67661 * 4 3 2 6 6 C 1.37930 * 120.15321 * 0.02562 * 5 4 3 7 7 C 1.39594 * 120.07527 * 179.70435 * 2 1 3 8 8 C 1.47644 * 120.14485 * 359.97438 * 7 2 1 9 9 N 1.29084 * 125.86854 * 359.72480 * 8 7 2 10 10 O 1.41395 * 112.87613 * 179.68103 * 9 8 7 11 11 C 1.44207 * 107.59096 * 17.49723 * 10 9 8 12 12 H 1.09003 * 111.00342 * 92.72671 * 11 10 9 13 13 C 1.50703 * 110.96958 * 216.47636 * 11 10 9 14 14 O 1.21276 * 120.00022 * 357.36613 * 13 11 10 15 15 N 1.34772 * 119.99873 * 177.35800 * 13 11 10 16 16 C 1.46501 * 120.00001 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47297 * 184.79611 * 16 15 13 18 18 C 1.50705 * 115.54907 * 294.82615 * 17 16 15 19 19 H 1.07993 * 120.00157 * 95.15406 * 18 17 16 20 20 C 1.37878 * 119.99328 * 275.15151 * 18 17 16 21 21 N 1.31506 * 120.00610 * 5.24365 * 20 18 17 22 22 Si 1.86808 * 119.99632 * 185.24411 * 20 18 17 23 23 H 1.48493 * 109.47014 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46945 * 300.00277 * 22 20 18 25 25 H 1.48505 * 109.47000 * 59.99881 * 22 20 18 26 26 C 1.53000 * 117.50019 * 80.49060 * 17 16 15 27 27 C 1.52998 * 117.50032 * 149.15509 * 17 16 15 28 28 C 1.51691 * 125.86555 * 179.72641 * 8 7 2 29 29 H 1.09004 * 109.47038 * 270.29867 * 1 2 3 30 30 H 1.09003 * 109.46628 * 30.29765 * 1 2 3 31 31 H 1.08995 * 109.47757 * 150.29367 * 1 2 3 32 32 H 1.07994 * 119.92565 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.85150 * 179.70224 * 4 3 2 34 34 H 1.07998 * 119.91868 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.07922 * 179.97438 * 6 5 4 36 36 H 0.97005 * 120.00158 * 0.02562 * 15 13 11 37 37 H 1.08996 * 109.47519 * 64.79508 * 16 15 13 38 38 H 1.08998 * 109.47207 * 304.79240 * 16 15 13 39 39 H 0.97002 * 120.00495 * 174.99876 * 21 20 18 40 40 H 1.08997 * 117.50104 * 215.00270 * 26 17 16 41 41 H 1.09004 * 117.49573 * 0.03061 * 26 17 16 42 42 H 1.08997 * 117.49661 * 359.97101 * 27 17 16 43 43 H 1.09001 * 117.49998 * 145.00316 * 27 17 16 44 44 H 1.09005 * 110.79401 * 46.34404 * 28 8 7 45 45 H 1.08995 * 110.79550 * 282.87082 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0063 5 6 4.2815 0.0016 -0.0059 6 6 3.6028 -1.1991 0.0003 7 6 2.2066 -1.2080 0.0062 8 6 1.4733 -2.4894 0.0134 9 7 0.1897 -2.6263 0.0197 10 8 -0.2187 -3.9800 0.0183 11 6 0.9127 -4.7770 0.4238 12 1 0.9049 -4.9472 1.5004 13 6 0.9481 -6.0839 -0.3258 14 8 0.0636 -6.3580 -1.1089 15 7 1.9630 -6.9479 -0.1261 16 6 1.9978 -8.2181 -0.8552 17 6 3.1777 -9.0576 -0.3613 18 6 4.5441 -8.4875 -0.6430 19 1 5.0489 -7.8985 0.1083 20 6 5.1495 -8.7181 -1.8601 21 7 4.4948 -9.3466 -2.8118 22 14 6.9002 -8.1378 -2.1572 23 1 7.3163 -8.5049 -3.5345 24 1 6.9666 -6.6630 -1.9970 25 1 7.8089 -8.7837 -1.1762 26 6 2.9930 -9.8383 0.9415 27 6 3.0261 -10.5796 -0.3974 28 6 2.0988 -3.8714 0.0147 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6586 2.1292 -0.0004 33 1 4.1183 2.1330 -0.0111 34 1 5.3615 0.0101 -0.0104 35 1 4.1500 -2.1302 0.0002 36 1 2.6704 -6.7288 0.5004 37 1 2.1124 -8.0221 -1.9213 38 1 1.0685 -8.7612 -0.6835 39 1 4.8928 -9.4450 -3.6909 40 1 3.8596 -9.9397 1.5947 41 1 2.0306 -9.7543 1.4464 42 1 2.0855 -10.9828 -0.7727 43 1 3.9146 -11.1687 -0.6249 44 1 2.9026 -3.9316 0.7486 45 1 2.4606 -4.1333 -0.9795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907934788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:25 Heat of formation + Delta-G solvation = 35.533933 kcal Electronic energy + Delta-G solvation = -27241.231356 eV Core-core repulsion = 23419.511930 eV Total energy + Delta-G solvation = -3821.719426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73890 -39.48841 -38.43226 -36.70357 -34.05472 -33.52871 -32.82524 -32.06110 -30.89585 -30.46197 -27.33947 -26.57323 -25.43168 -23.93306 -23.58832 -21.72773 -21.26714 -20.19609 -19.85875 -19.37418 -17.40609 -17.27212 -16.33108 -16.14660 -15.91036 -15.43414 -15.07136 -14.84899 -14.68835 -14.48443 -14.17705 -13.91684 -13.61598 -13.44969 -13.25418 -12.97903 -12.90168 -12.57209 -12.46588 -12.25697 -12.06846 -11.75222 -11.67657 -11.59908 -11.38197 -11.06947 -11.01387 -10.62066 -10.45635 -10.34242 -10.21630 -9.73018 -9.36368 -9.06867 -9.06616 -8.70856 -8.59085 -8.39176 -8.20060 -6.15613 -4.25712 0.45336 1.07263 2.02598 2.70735 2.92639 3.19437 3.27011 3.27639 3.49671 3.62177 3.88764 4.27282 4.31205 4.42167 4.57614 4.60643 4.73119 4.80119 5.00985 5.06027 5.13061 5.14025 5.24053 5.31297 5.40313 5.50283 5.52158 5.60991 5.61685 5.70337 5.94532 6.06530 6.13943 6.18486 6.25918 6.34350 6.38630 6.47969 6.62685 6.63068 6.77339 7.02990 7.10573 7.22907 7.33425 7.40698 7.72462 8.09494 8.24861 8.66250 8.75716 9.41871 10.92128 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.003240 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.165298 B = 8641.004812 C =10344.016472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C -0.128 4.128 4 C -0.097 4.097 5 C -0.130 4.130 6 C -0.079 4.079 7 C -0.047 4.047 8 C 0.128 3.872 9 N -0.281 5.281 10 O -0.170 6.170 11 C 0.029 3.971 12 H 0.111 0.889 13 C 0.509 3.491 14 O -0.530 6.530 15 N -0.695 5.695 16 C 0.163 3.837 17 C 0.027 3.973 18 C -0.504 4.504 19 H 0.060 0.940 20 C 0.075 3.925 21 N -0.873 5.873 22 Si 0.890 3.110 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.276 1.276 26 C -0.210 4.210 27 C -0.147 4.147 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 18.446 7.896 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 C -0.146 4.146 4 C -0.116 4.116 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.048 4.048 8 C -0.060 4.060 9 N -0.022 5.022 10 O -0.187 6.187 11 C -0.034 4.034 12 H 0.128 0.872 13 C 0.291 3.709 14 O -0.407 6.407 15 N -0.346 5.346 16 C 0.041 3.959 17 C 0.026 3.974 18 C -0.542 4.542 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.508 5.508 22 Si 0.718 3.282 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.248 4.248 27 C -0.185 4.185 28 C -0.179 4.179 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.491 18.430 7.073 19.898 hybrid contribution 2.198 -0.193 0.062 2.207 sum -0.293 18.238 7.135 19.586 Atomic orbital electron populations 1.21258 0.90154 1.04475 1.03220 1.20163 0.96809 0.91813 0.95677 1.21014 0.94271 0.97395 1.01936 1.21341 0.94233 0.98368 0.97639 1.21089 1.00328 0.91995 1.01381 1.21311 0.92348 0.99174 0.97120 1.17746 0.92526 0.88470 1.06069 1.24247 0.92213 0.94629 0.94960 1.78477 1.13243 0.97322 1.13127 1.91383 1.29771 1.10004 1.87559 1.23544 0.86902 0.92449 1.00487 0.87196 1.19857 0.83151 0.84610 0.83299 1.90722 1.37616 1.76386 1.35961 1.45904 1.24284 1.19644 1.44756 1.21066 0.96614 0.81775 0.96479 1.19016 0.93935 0.90086 0.94318 1.20296 0.99301 1.34104 1.00472 0.92196 1.24989 0.97506 0.94226 0.96238 1.69954 1.37805 1.40372 1.02715 0.86700 0.85044 0.79060 0.77421 1.21238 1.20243 1.20141 1.23032 0.99944 1.10021 0.91773 1.22502 1.00542 0.96953 0.98497 1.22984 0.99868 0.88766 1.06287 0.90675 0.91622 0.88089 0.85477 0.85634 0.85250 0.84870 0.76444 0.90832 0.94048 0.92673 0.90299 0.91605 0.91623 0.89737 0.86784 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.17 36.01 0.33 -1.02 16 2 C -0.04 -0.44 5.91 -104.21 -0.62 -1.06 16 3 C -0.13 -1.07 9.69 -39.64 -0.38 -1.45 16 4 C -0.10 -0.73 10.04 -39.49 -0.40 -1.12 16 5 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 6 C -0.08 -0.74 9.61 -39.17 -0.38 -1.12 16 7 C -0.05 -0.52 5.87 -105.03 -0.62 -1.14 16 8 C 0.13 1.64 7.05 -79.42 -0.56 1.08 16 9 N -0.28 -4.22 8.97 35.30 0.32 -3.90 16 10 O -0.17 -2.98 11.82 -30.22 -0.36 -3.34 16 11 C 0.03 0.42 4.23 -26.97 -0.11 0.31 16 12 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 13 C 0.51 9.48 7.14 -10.99 -0.08 9.40 16 14 O -0.53 -12.30 16.58 -13.29 -0.22 -12.52 16 15 N -0.70 -12.71 5.47 -60.29 -0.33 -13.04 16 16 C 0.16 3.57 5.50 -4.04 -0.02 3.55 16 17 C 0.03 0.61 1.39 -155.66 -0.22 0.39 16 18 C -0.50 -12.27 8.59 -34.44 -0.30 -12.57 16 19 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 20 C 0.08 1.91 5.40 -17.82 -0.10 1.81 16 21 N -0.87 -23.45 12.90 55.43 0.72 -22.74 16 22 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.21 -4.19 9.96 -26.69 -0.27 -4.45 16 27 C -0.15 -3.25 9.42 -26.69 -0.25 -3.50 16 28 C -0.14 -1.71 5.81 -26.48 -0.15 -1.86 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.10 1.25 5.19 -51.93 -0.27 0.98 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.06 7.37 -52.49 -0.39 0.67 16 36 H 0.40 6.41 8.33 -40.82 -0.34 6.07 16 37 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 44 H 0.11 1.02 7.96 -51.93 -0.41 0.61 16 45 H 0.11 1.51 7.90 -51.93 -0.41 1.10 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -30.98 381.67 -10.09 -41.07 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.43 Total: 8.28 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -4.51 Total: -14.19 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.70 Total: -39.68 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.58 Total: -15.85 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.98 -10.09 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907934788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.609 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds