Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37974 * 120.07935 * 2 1 4 4 C 1.38340 * 120.14908 * 180.30156 * 3 2 1 5 5 C 1.38388 * 120.29870 * 359.67661 * 4 3 2 6 6 C 1.37930 * 120.15321 * 0.02562 * 5 4 3 7 7 C 1.39594 * 120.07527 * 179.70435 * 2 1 3 8 8 C 1.47644 * 120.14485 * 359.97438 * 7 2 1 9 9 N 1.29084 * 125.86854 * 359.72480 * 8 7 2 10 10 O 1.41395 * 112.87613 * 179.68103 * 9 8 7 11 11 C 1.44207 * 107.59096 * 17.49723 * 10 9 8 12 12 H 1.09003 * 111.00342 * 92.72671 * 11 10 9 13 13 C 1.50703 * 110.96958 * 216.47636 * 11 10 9 14 14 O 1.21276 * 120.00022 * 357.36613 * 13 11 10 15 15 N 1.34772 * 119.99873 * 177.35800 * 13 11 10 16 16 C 1.46501 * 120.00001 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47297 * 184.79611 * 16 15 13 18 18 C 1.50705 * 115.54907 * 294.82615 * 17 16 15 19 19 H 1.07993 * 120.00157 * 95.15406 * 18 17 16 20 20 C 1.37878 * 119.99328 * 275.15151 * 18 17 16 21 21 N 1.31506 * 120.00610 * 5.24365 * 20 18 17 22 22 Si 1.86808 * 119.99632 * 185.24411 * 20 18 17 23 23 H 1.48493 * 109.47014 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46945 * 300.00277 * 22 20 18 25 25 H 1.48505 * 109.47000 * 59.99881 * 22 20 18 26 26 C 1.53000 * 117.50019 * 80.49060 * 17 16 15 27 27 C 1.52998 * 117.50032 * 149.15509 * 17 16 15 28 28 C 1.51691 * 125.86555 * 179.72641 * 8 7 2 29 29 H 1.09004 * 109.47038 * 270.29867 * 1 2 3 30 30 H 1.09003 * 109.46628 * 30.29765 * 1 2 3 31 31 H 1.08995 * 109.47757 * 150.29367 * 1 2 3 32 32 H 1.07994 * 119.92565 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.85150 * 179.70224 * 4 3 2 34 34 H 1.07998 * 119.91868 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.07922 * 179.97438 * 6 5 4 36 36 H 0.97005 * 120.00158 * 0.02562 * 15 13 11 37 37 H 1.08996 * 109.47519 * 64.79508 * 16 15 13 38 38 H 1.08998 * 109.47207 * 304.79240 * 16 15 13 39 39 H 0.97002 * 120.00495 * 174.99876 * 21 20 18 40 40 H 1.08997 * 117.50104 * 215.00270 * 26 17 16 41 41 H 1.09004 * 117.49573 * 0.03061 * 26 17 16 42 42 H 1.08997 * 117.49661 * 359.97101 * 27 17 16 43 43 H 1.09001 * 117.49998 * 145.00316 * 27 17 16 44 44 H 1.09005 * 110.79401 * 46.34404 * 28 8 7 45 45 H 1.08995 * 110.79550 * 282.87082 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0063 5 6 4.2815 0.0016 -0.0059 6 6 3.6028 -1.1991 0.0003 7 6 2.2066 -1.2080 0.0062 8 6 1.4733 -2.4894 0.0134 9 7 0.1897 -2.6263 0.0197 10 8 -0.2187 -3.9800 0.0183 11 6 0.9127 -4.7770 0.4238 12 1 0.9049 -4.9472 1.5004 13 6 0.9481 -6.0839 -0.3258 14 8 0.0636 -6.3580 -1.1089 15 7 1.9630 -6.9479 -0.1261 16 6 1.9978 -8.2181 -0.8552 17 6 3.1777 -9.0576 -0.3613 18 6 4.5441 -8.4875 -0.6430 19 1 5.0489 -7.8985 0.1083 20 6 5.1495 -8.7181 -1.8601 21 7 4.4948 -9.3466 -2.8118 22 14 6.9002 -8.1378 -2.1572 23 1 7.3163 -8.5049 -3.5345 24 1 6.9666 -6.6630 -1.9970 25 1 7.8089 -8.7837 -1.1762 26 6 2.9930 -9.8383 0.9415 27 6 3.0261 -10.5796 -0.3974 28 6 2.0988 -3.8714 0.0147 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6586 2.1292 -0.0004 33 1 4.1183 2.1330 -0.0111 34 1 5.3615 0.0101 -0.0104 35 1 4.1500 -2.1302 0.0002 36 1 2.6704 -6.7288 0.5004 37 1 2.1124 -8.0221 -1.9213 38 1 1.0685 -8.7612 -0.6835 39 1 4.8928 -9.4450 -3.6909 40 1 3.8596 -9.9397 1.5947 41 1 2.0306 -9.7543 1.4464 42 1 2.0855 -10.9828 -0.7727 43 1 3.9146 -11.1687 -0.6249 44 1 2.9026 -3.9316 0.7486 45 1 2.4606 -4.1333 -0.9795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907934788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = 18.751181 kcal Electronic energy + Delta-G solvation = -27241.959111 eV Core-core repulsion = 23419.511930 eV Total energy + Delta-G solvation = -3822.447181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85307 -40.50943 -39.66380 -38.42320 -35.20373 -34.90920 -33.97020 -33.61460 -32.04329 -31.25320 -28.38148 -27.91714 -27.22404 -25.17637 -24.37156 -22.97442 -22.44331 -21.53194 -21.26684 -20.74832 -18.82712 -18.31978 -17.82563 -17.16822 -16.91043 -16.75864 -16.60405 -16.16527 -15.79966 -15.77865 -15.46003 -14.95372 -14.89534 -14.52174 -14.33175 -14.15723 -13.96175 -13.87557 -13.64068 -13.50753 -13.30386 -13.01402 -12.93734 -12.83889 -12.75402 -12.38681 -12.37250 -12.04361 -12.02141 -11.53641 -11.42509 -11.28794 -10.87564 -10.78290 -10.45437 -10.09881 -9.92906 -9.73343 -9.52065 -8.07984 -6.22416 -0.33416 0.43297 1.17533 1.41772 1.46037 1.48777 1.54477 1.54861 2.36046 2.45020 2.82599 2.85426 3.20699 3.30042 3.32609 3.46557 3.69738 3.87033 3.90413 3.98462 4.18819 4.23034 4.30853 4.42693 4.47505 4.53702 4.55551 4.61856 4.63754 4.71489 4.77112 4.84615 4.87542 4.98101 5.01310 5.06996 5.27009 5.38362 5.44299 5.48551 5.55613 5.56599 5.61173 5.64787 5.78700 5.99923 6.17293 6.36827 6.60478 6.85773 7.19636 7.48266 8.99411 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.003240 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.165298 B = 8641.004812 C =10344.016472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.089 4.089 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.074 4.074 8 C 0.144 3.856 9 N -0.303 5.303 10 O -0.214 6.214 11 C 0.034 3.966 12 H 0.144 0.856 13 C 0.509 3.491 14 O -0.583 6.583 15 N -0.683 5.683 16 C 0.178 3.822 17 C 0.008 3.992 18 C -0.505 4.505 19 H 0.071 0.929 20 C 0.025 3.975 21 N -0.910 5.910 22 Si 0.949 3.051 23 H -0.297 1.297 24 H -0.264 1.264 25 H -0.271 1.271 26 C -0.175 4.175 27 C -0.162 4.162 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.416 0.584 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.258 0.742 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.155 0.845 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 21.032 9.984 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.108 4.108 5 C -0.150 4.150 6 C -0.103 4.103 7 C -0.076 4.076 8 C -0.044 4.044 9 N -0.048 5.048 10 O -0.229 6.229 11 C -0.028 4.028 12 H 0.161 0.839 13 C 0.294 3.706 14 O -0.463 6.463 15 N -0.334 5.334 16 C 0.054 3.946 17 C 0.007 3.993 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.176 4.176 21 N -0.547 5.547 22 Si 0.775 3.225 23 H -0.223 1.223 24 H -0.188 1.188 25 H -0.196 1.196 26 C -0.212 4.212 27 C -0.200 4.200 28 C -0.174 4.174 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.173 0.827 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.088 21.014 9.208 22.943 hybrid contribution 1.511 -0.880 -0.591 1.846 sum 1.424 20.134 8.617 21.947 Atomic orbital electron populations 1.21195 0.90627 1.03939 1.03109 1.20325 0.96797 0.92541 0.96304 1.21295 0.94989 0.97398 1.01334 1.21756 0.93978 0.99587 0.95466 1.21452 1.01655 0.91561 1.00377 1.21540 0.91573 1.00533 0.96629 1.17891 0.93374 0.87751 1.08553 1.24647 0.91714 0.95651 0.92389 1.78615 1.14504 0.95373 1.16324 1.91353 1.31430 1.11753 1.88354 1.23593 0.87649 0.90285 1.01296 0.83862 1.20563 0.81950 0.85640 0.82481 1.90693 1.39566 1.77707 1.38364 1.45692 1.24734 1.18539 1.44405 1.20637 0.96246 0.83211 0.94497 1.19039 0.93409 0.90101 0.96717 1.20661 0.99882 1.33337 1.00342 0.91075 1.25727 1.00888 0.94666 0.96299 1.70103 1.39368 1.42322 1.02937 0.85749 0.80836 0.79254 0.76623 1.22340 1.18827 1.19567 1.23025 1.01442 1.06248 0.90512 1.22444 0.99819 0.96772 1.01003 1.23044 0.99851 0.87707 1.06818 0.90648 0.89970 0.90638 0.83435 0.82686 0.82829 0.83646 0.74720 0.95028 0.94599 0.93306 0.89219 0.89439 0.91442 0.91711 0.82689 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.17 71.24 0.65 -1.96 16 2 C -0.06 -1.10 5.91 -19.60 -0.12 -1.22 16 3 C -0.13 -1.83 9.69 22.23 0.22 -1.61 16 4 C -0.09 -0.99 10.04 22.33 0.22 -0.76 16 5 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 6 C -0.08 -1.31 9.61 22.53 0.22 -1.09 16 7 C -0.07 -1.53 5.87 -20.13 -0.12 -1.65 16 8 C 0.14 3.58 7.05 45.76 0.32 3.90 16 9 N -0.30 -9.28 8.97 -42.23 -0.38 -9.66 16 10 O -0.21 -7.75 11.82 -20.30 -0.24 -7.99 16 11 C 0.03 0.97 4.23 30.44 0.13 1.10 16 12 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 13 C 0.51 19.18 7.14 87.66 0.63 19.81 16 14 O -0.58 -28.23 16.58 15.01 0.25 -27.98 16 15 N -0.68 -24.66 5.47 -463.07 -2.53 -27.20 16 16 C 0.18 7.93 5.50 86.38 0.48 8.40 16 17 C 0.01 0.36 1.39 -52.93 -0.07 0.29 16 18 C -0.50 -24.08 8.59 25.60 0.22 -23.86 16 19 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 20 C 0.03 1.26 5.40 84.66 0.46 1.72 16 21 N -0.91 -50.08 12.90 21.45 0.28 -49.80 16 22 Si 0.95 39.81 29.54 68.60 2.03 41.83 16 23 H -0.30 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 C -0.18 -6.61 9.96 30.62 0.30 -6.31 16 27 C -0.16 -7.19 9.42 30.62 0.29 -6.90 16 28 C -0.14 -3.11 5.81 30.76 0.18 -2.93 16 29 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.08 1.93 5.19 -2.39 -0.01 1.92 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 34 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.15 1.83 7.37 -2.91 -0.02 1.81 16 36 H 0.42 12.49 8.33 -92.70 -0.77 11.72 16 37 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.61 8.09 -2.39 -0.02 1.60 16 39 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 40 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.09 2.94 8.14 -2.38 -0.02 2.93 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.16 2.23 7.96 -2.38 -0.02 2.21 16 45 H 0.10 2.64 7.90 -2.39 -0.02 2.62 16 Total: -1.00 -70.46 381.67 3.86 -66.60 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.24 Total: 28.65 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.23 Total: -14.45 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.64 Total: -86.66 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: 0.01 Total: -35.97 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -70.46 3.86 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907934788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.347 kcal (2) G-P(sol) polarization free energy of solvation -70.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds