Wall clock time and date at job start Tue Mar 31 2020 14:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 H 1.08005 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47198 * 120.00527 * 10 8 6 13 13 H 1.48498 * 109.47360 * 240.00281 * 10 8 6 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21281 * 120.00220 * 179.72597 * 14 4 3 16 16 C 1.50706 * 120.00080 * 359.72107 * 14 4 3 17 17 H 1.09000 * 110.85416 * 307.34873 * 16 14 4 18 18 C 1.54733 * 110.97026 * 71.18436 * 16 14 4 19 19 C 1.51693 * 102.54678 * 93.89653 * 18 16 14 20 20 C 1.47645 * 125.86721 * 195.34641 * 19 18 16 21 21 C 1.39637 * 120.14660 * 359.75068 * 20 19 18 22 22 C 1.37937 * 119.84827 * 179.69629 * 21 20 19 23 23 C 1.38378 * 120.14396 * 0.60355 * 22 21 20 24 24 C 1.38330 * 120.30559 * 359.67444 * 23 22 21 25 25 C 1.37972 * 120.14876 * 0.02562 * 24 23 22 26 26 C 1.50709 * 120.07618 * 180.02562 * 25 24 23 27 27 N 1.29084 * 108.26824 * 15.38727 * 19 18 16 28 28 O 1.41385 * 112.87421 * 0.32244 * 27 19 18 29 29 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 33 33 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 34 34 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 35 35 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 36 36 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.79331 * 212.15508 * 18 16 14 38 38 H 1.08996 * 110.79890 * 335.63415 * 18 16 14 39 39 H 1.08006 * 120.07440 * 359.97438 * 21 20 19 40 40 H 1.07993 * 119.92820 * 180.29430 * 22 21 20 41 41 H 1.08002 * 119.84364 * 179.69029 * 23 22 21 42 42 H 1.08007 * 119.92666 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.46422 * 269.97099 * 26 25 24 44 44 H 1.08999 * 109.47222 * 29.96804 * 26 25 24 45 45 H 1.08995 * 109.47177 * 149.97616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8586 2.9394 0.3797 8 6 6.6018 1.7095 0.3077 9 7 7.0925 0.5024 0.4861 10 14 7.7206 3.1005 -0.2428 11 1 6.9296 4.3509 -0.3704 12 1 8.7972 3.2966 0.7610 13 1 8.3244 2.7600 -1.5560 14 6 2.5919 1.8171 2.3228 15 8 3.3605 1.8347 3.2609 16 6 1.1876 2.3379 2.4895 17 1 0.9547 3.0778 1.7238 18 6 0.1617 1.1797 2.4719 19 6 -0.0069 0.8663 3.9466 20 6 -0.6213 -0.3536 4.5070 21 6 -1.1157 -1.3443 3.6560 22 6 -1.6828 -2.4844 4.1862 23 6 -1.7738 -2.6419 5.5580 24 6 -1.2913 -1.6619 6.4067 25 6 -0.7161 -0.5193 5.8897 26 6 -0.1904 0.5471 6.8159 27 7 0.4784 1.8499 4.6273 28 8 0.9926 2.8829 3.8103 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.7141 0.4279 1.9200 35 1 4.3666 0.0351 0.2190 36 1 8.0354 0.3345 0.3322 37 1 -0.7824 1.5055 2.0353 38 1 0.5600 0.3180 1.9364 39 1 -1.0500 -1.2201 2.5851 40 1 -2.0612 -3.2535 3.5293 41 1 -2.2233 -3.5343 5.9679 42 1 -1.3659 -1.7910 7.4764 43 1 -0.9829 1.2639 7.0313 44 1 0.1463 0.0876 7.7451 45 1 0.6452 1.0612 6.3410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908340852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:01 Heat of formation + Delta-G solvation = 49.250032 kcal Electronic energy + Delta-G solvation = -28339.107211 eV Core-core repulsion = 24517.982560 eV Total energy + Delta-G solvation = -3821.124651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80283 -39.42380 -38.17146 -36.01408 -33.89287 -33.55229 -32.68317 -32.19284 -30.67516 -30.34186 -27.76238 -27.12947 -25.68527 -24.48491 -23.53443 -22.47801 -21.58710 -20.16114 -19.97634 -18.70241 -17.34819 -16.94173 -16.50439 -16.09578 -15.81519 -15.49621 -15.16050 -14.96772 -14.52085 -14.40524 -14.19349 -13.82101 -13.66857 -13.39373 -13.31309 -13.05468 -12.83318 -12.49714 -12.30989 -12.19559 -12.12776 -11.83134 -11.71007 -11.48593 -11.35085 -11.26583 -11.18602 -10.88422 -10.63978 -10.47770 -10.27392 -10.14627 -9.67656 -9.19678 -8.99981 -8.89244 -8.48035 -8.46811 -7.81845 -6.08458 -4.13394 0.60244 1.17179 2.13325 2.19537 2.93971 3.28133 3.33656 3.36686 3.40460 3.61435 3.73575 3.96374 4.39605 4.42655 4.53654 4.68193 4.71802 4.77140 4.81371 4.97260 5.08527 5.11928 5.21913 5.25988 5.26736 5.36053 5.42042 5.47821 5.56487 5.64405 5.72278 5.75068 5.80932 5.87881 5.99190 6.17824 6.23725 6.30207 6.49626 6.53368 6.60566 6.74784 6.93781 7.35583 7.38037 7.44829 7.87520 8.17185 8.24260 8.82061 8.96514 9.52049 10.99779 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003380 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.262924 B = 8282.289690 C = 8689.465718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.130 3.870 4 N -0.589 5.589 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.492 3.508 15 O -0.513 6.513 16 C 0.025 3.975 17 H 0.132 0.868 18 C -0.155 4.155 19 C 0.119 3.881 20 C -0.041 4.041 21 C -0.082 4.082 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.042 4.042 26 C -0.135 4.135 27 N -0.269 5.269 28 O -0.173 6.173 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 -5.913 3.207 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.323 5.323 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.277 3.723 15 O -0.388 6.388 16 C -0.037 4.037 17 H 0.149 0.851 18 C -0.194 4.194 19 C -0.070 4.070 20 C -0.042 4.042 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.044 4.044 26 C -0.191 4.191 27 N -0.010 5.010 28 O -0.190 6.190 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.269 -5.281 4.733 22.420 hybrid contribution 0.661 0.369 -1.396 1.589 sum -20.608 -4.912 3.337 21.446 Atomic orbital electron populations 1.23905 0.95772 1.02057 1.01981 1.23619 0.96149 1.00312 0.97843 1.20679 0.92453 0.93949 0.92335 1.48215 1.14597 1.61052 1.08400 1.19341 0.74939 0.94647 0.98310 1.21452 0.93460 0.95944 1.45832 0.92312 1.24934 0.97897 0.95838 0.95377 1.69940 1.14104 1.20211 1.49010 0.86430 0.80632 0.82167 0.78134 1.19750 1.20829 1.20934 1.20423 0.88498 0.79615 0.83804 1.90729 1.54564 1.54170 1.39313 1.23674 0.94254 0.96943 0.88836 0.85107 1.23665 1.00300 1.00731 0.94726 1.24254 0.94660 0.94196 0.93889 1.17750 1.01938 0.91806 0.92706 1.21239 0.96497 0.92798 0.99669 1.21037 1.00789 0.97683 0.95381 1.21302 0.98289 0.98646 0.93621 1.21013 0.99726 0.93638 1.00112 1.20179 0.95422 0.95931 0.92911 1.21267 1.02944 0.96794 0.98144 1.78394 1.07941 0.97712 1.16967 1.91302 1.81797 1.27404 1.18454 0.88103 0.88327 0.86582 0.91161 0.88348 0.93846 0.94739 0.92718 0.87284 0.85420 0.85222 0.85421 0.85719 0.85509 0.90710 0.91650 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 11.19 29.02 0.32 -1.40 16 2 C -0.16 -1.90 8.14 -36.02 -0.29 -2.20 16 3 C 0.13 1.91 5.47 -5.19 -0.03 1.88 16 4 N -0.59 -12.07 2.44 -176.43 -0.43 -12.50 16 5 C 0.25 6.32 5.17 -5.19 -0.03 6.29 16 6 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.49 10.58 7.02 -10.98 -0.08 10.50 16 15 O -0.51 -13.82 16.16 -13.28 -0.21 -14.04 16 16 C 0.03 0.42 3.24 -26.97 -0.09 0.33 16 17 H 0.13 1.74 7.07 -51.93 -0.37 1.37 16 18 C -0.16 -1.97 3.70 -26.48 -0.10 -2.07 16 19 C 0.12 1.74 7.05 -79.42 -0.56 1.18 16 20 C -0.04 -0.52 5.87 -105.03 -0.62 -1.14 16 21 C -0.08 -0.83 9.61 -39.17 -0.38 -1.20 16 22 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 23 C -0.10 -0.84 10.04 -39.50 -0.40 -1.24 16 24 C -0.13 -1.23 9.69 -39.64 -0.38 -1.62 16 25 C -0.04 -0.51 5.91 -104.21 -0.62 -1.13 16 26 C -0.14 -1.66 9.18 36.01 0.33 -1.33 16 27 N -0.27 -4.67 8.97 35.30 0.32 -4.36 16 28 O -0.17 -3.28 11.82 -30.20 -0.36 -3.64 16 29 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.10 0.71 6.99 -52.49 -0.37 0.35 16 31 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.07 0.84 5.91 -51.93 -0.31 0.53 16 33 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.04 1.28 7.41 -51.93 -0.38 0.90 16 35 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.11 1.00 7.46 -51.93 -0.39 0.62 16 38 H 0.13 1.58 3.58 -51.93 -0.19 1.39 16 39 H 0.13 1.05 7.38 -52.48 -0.39 0.67 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.10 1.58 5.19 -51.93 -0.27 1.31 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -35.66 369.48 -9.12 -44.78 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.00 Total: 1.17 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.72 Total: -8.16 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.62 Total: -42.54 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.57 Total: -17.68 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.66 -9.12 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908340852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.030 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds