Wall clock time and date at job start Tue Mar 31 2020 14:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 H 1.08005 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47198 * 120.00527 * 10 8 6 13 13 H 1.48498 * 109.47360 * 240.00281 * 10 8 6 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21281 * 120.00220 * 179.72597 * 14 4 3 16 16 C 1.50706 * 120.00080 * 359.72107 * 14 4 3 17 17 H 1.09000 * 110.85416 * 307.34873 * 16 14 4 18 18 C 1.54733 * 110.97026 * 71.18436 * 16 14 4 19 19 C 1.51693 * 102.54678 * 93.89653 * 18 16 14 20 20 C 1.47645 * 125.86721 * 195.34641 * 19 18 16 21 21 C 1.39637 * 120.14660 * 359.75068 * 20 19 18 22 22 C 1.37937 * 119.84827 * 179.69629 * 21 20 19 23 23 C 1.38378 * 120.14396 * 0.60355 * 22 21 20 24 24 C 1.38330 * 120.30559 * 359.67444 * 23 22 21 25 25 C 1.37972 * 120.14876 * 0.02562 * 24 23 22 26 26 C 1.50709 * 120.07618 * 180.02562 * 25 24 23 27 27 N 1.29084 * 108.26824 * 15.38727 * 19 18 16 28 28 O 1.41385 * 112.87421 * 0.32244 * 27 19 18 29 29 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 33 33 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 34 34 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 35 35 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 36 36 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.79331 * 212.15508 * 18 16 14 38 38 H 1.08996 * 110.79890 * 335.63415 * 18 16 14 39 39 H 1.08006 * 120.07440 * 359.97438 * 21 20 19 40 40 H 1.07993 * 119.92820 * 180.29430 * 22 21 20 41 41 H 1.08002 * 119.84364 * 179.69029 * 23 22 21 42 42 H 1.08007 * 119.92666 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.46422 * 269.97099 * 26 25 24 44 44 H 1.08999 * 109.47222 * 29.96804 * 26 25 24 45 45 H 1.08995 * 109.47177 * 149.97616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8586 2.9394 0.3797 8 6 6.6018 1.7095 0.3077 9 7 7.0925 0.5024 0.4861 10 14 7.7206 3.1005 -0.2428 11 1 6.9296 4.3509 -0.3704 12 1 8.7972 3.2966 0.7610 13 1 8.3244 2.7600 -1.5560 14 6 2.5919 1.8171 2.3228 15 8 3.3605 1.8347 3.2609 16 6 1.1876 2.3379 2.4895 17 1 0.9547 3.0778 1.7238 18 6 0.1617 1.1797 2.4719 19 6 -0.0069 0.8663 3.9466 20 6 -0.6213 -0.3536 4.5070 21 6 -1.1157 -1.3443 3.6560 22 6 -1.6828 -2.4844 4.1862 23 6 -1.7738 -2.6419 5.5580 24 6 -1.2913 -1.6619 6.4067 25 6 -0.7161 -0.5193 5.8897 26 6 -0.1904 0.5471 6.8159 27 7 0.4784 1.8499 4.6273 28 8 0.9926 2.8829 3.8103 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.7141 0.4279 1.9200 35 1 4.3666 0.0351 0.2190 36 1 8.0354 0.3345 0.3322 37 1 -0.7824 1.5055 2.0353 38 1 0.5600 0.3180 1.9364 39 1 -1.0500 -1.2201 2.5851 40 1 -2.0612 -3.2535 3.5293 41 1 -2.2233 -3.5343 5.9679 42 1 -1.3659 -1.7910 7.4764 43 1 -0.9829 1.2639 7.0313 44 1 0.1463 0.0876 7.7451 45 1 0.6452 1.0612 6.3410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908340852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:00 Heat of formation + Delta-G solvation = 27.516087 kcal Electronic energy + Delta-G solvation = -28340.049666 eV Core-core repulsion = 24517.982560 eV Total energy + Delta-G solvation = -3822.067106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05073 -40.43667 -39.49586 -37.47303 -35.33117 -34.90219 -33.92356 -33.48544 -31.93039 -31.22722 -29.59666 -28.01430 -26.97571 -26.06909 -24.41787 -24.16051 -22.42445 -21.18883 -21.00158 -20.04434 -18.78455 -18.57721 -18.02726 -17.21128 -17.05620 -16.71730 -16.53842 -15.97179 -15.79173 -15.78087 -15.37621 -14.99689 -14.72848 -14.52890 -14.33680 -14.28093 -14.00629 -13.95302 -13.56110 -13.48796 -13.29391 -13.05820 -13.01257 -12.99567 -12.75722 -12.53056 -12.30426 -12.21986 -12.19965 -11.99971 -11.71321 -11.66221 -11.29768 -10.69034 -10.41768 -10.03604 -9.70788 -9.57288 -9.48581 -8.27157 -6.41848 -0.26746 0.44551 1.22634 1.28697 1.33079 1.36328 1.47209 1.54495 2.01060 2.23079 2.38355 2.84805 2.93891 3.02976 3.32469 3.35123 3.52472 3.88846 3.91518 3.97575 4.11931 4.13520 4.21399 4.38987 4.42536 4.45534 4.55637 4.57496 4.64876 4.73698 4.81134 4.83186 4.88386 4.93621 5.07084 5.11881 5.19750 5.37834 5.46122 5.48957 5.55753 5.62759 5.73675 5.76381 5.78201 6.00561 6.01947 6.26895 6.60147 6.68332 7.19829 7.34396 8.80496 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003380 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.262924 B = 8282.289690 C = 8689.465718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.199 4.199 3 C 0.124 3.876 4 N -0.588 5.588 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.480 3.520 15 O -0.587 6.587 16 C 0.030 3.970 17 H 0.168 0.832 18 C -0.145 4.145 19 C 0.128 3.872 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.134 4.134 25 C -0.065 4.065 26 C -0.132 4.132 27 N -0.310 5.310 28 O -0.210 6.210 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.085 0.915 34 H -0.010 1.010 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.916 -7.012 1.412 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.219 4.219 3 C 0.003 3.997 4 N -0.319 5.319 5 C 0.142 3.858 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.268 3.732 15 O -0.467 6.467 16 C -0.032 4.032 17 H 0.185 0.815 18 C -0.183 4.183 19 C -0.060 4.060 20 C -0.076 4.076 21 C -0.100 4.100 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.067 4.067 26 C -0.189 4.189 27 N -0.055 5.055 28 O -0.224 6.224 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.008 0.992 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.053 -6.369 2.875 26.010 hybrid contribution 1.685 0.520 -0.793 1.933 sum -23.369 -5.849 2.083 24.179 Atomic orbital electron populations 1.24331 0.94215 1.04694 0.95759 1.23220 0.97310 0.97917 1.03428 1.21013 0.92029 0.97259 0.89399 1.48197 1.13593 1.59952 1.10200 1.18747 0.77993 0.94053 0.94998 1.21730 0.94454 0.96172 1.45980 0.92825 1.25860 0.99481 0.98456 0.95294 1.70056 1.14677 1.22213 1.49728 0.85363 0.78254 0.78972 0.78190 1.19130 1.20999 1.18998 1.21542 0.90451 0.78438 0.82794 1.90678 1.57153 1.57193 1.41710 1.23785 0.91196 0.99088 0.89124 0.81521 1.23818 1.01171 0.99463 0.93821 1.24865 0.92340 0.93839 0.94975 1.17988 1.04047 0.92136 0.93467 1.21555 0.95579 0.92361 1.00552 1.21489 0.99565 0.97651 0.95972 1.21754 0.96648 0.98931 0.93716 1.21272 0.99398 0.93073 1.01469 1.20323 0.96591 0.96783 0.92986 1.21170 1.01849 0.97191 0.98646 1.78517 1.10902 0.98972 1.17068 1.91267 1.82353 1.29115 1.19661 0.85254 0.85609 0.88463 0.87549 0.89665 0.99162 0.95202 0.92353 0.82176 0.84770 0.82960 0.82094 0.82560 0.83812 0.90424 0.90463 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 11.19 67.79 0.76 -1.07 16 2 C -0.20 -4.33 8.14 25.65 0.21 -4.12 16 3 C 0.12 3.54 5.47 85.63 0.47 4.01 16 4 N -0.59 -25.03 2.44 -830.48 -2.03 -27.06 16 5 C 0.26 14.44 5.17 85.63 0.44 14.88 16 6 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 10 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 14 C 0.48 21.60 7.02 87.66 0.62 22.21 16 15 O -0.59 -34.27 16.16 14.98 0.24 -34.02 16 16 C 0.03 0.97 3.24 30.44 0.10 1.07 16 17 H 0.17 4.00 7.07 -2.39 -0.02 3.98 16 18 C -0.14 -3.27 3.70 30.76 0.11 -3.16 16 19 C 0.13 3.68 7.05 45.77 0.32 4.00 16 20 C -0.08 -1.81 5.87 -20.13 -0.12 -1.93 16 21 C -0.08 -1.34 9.61 22.54 0.22 -1.12 16 22 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16 23 C -0.09 -1.19 10.04 22.33 0.22 -0.96 16 24 C -0.13 -2.33 9.69 22.23 0.22 -2.11 16 25 C -0.06 -1.54 5.91 -19.60 -0.12 -1.65 16 26 C -0.13 -3.41 9.18 71.24 0.65 -2.76 16 27 N -0.31 -11.24 8.97 -42.23 -0.38 -11.62 16 28 O -0.21 -8.28 11.82 -20.29 -0.24 -8.52 16 29 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.13 0.90 6.99 -2.91 -0.02 0.88 16 31 H 0.10 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.11 2.20 5.91 -2.39 -0.01 2.18 16 33 H 0.09 2.61 8.07 -2.38 -0.02 2.59 16 34 H -0.01 -0.63 7.41 -2.39 -0.02 -0.65 16 35 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.16 2.02 7.46 -2.39 -0.02 2.00 16 38 H 0.13 2.92 3.58 -2.39 -0.01 2.91 16 39 H 0.15 1.69 7.38 -2.91 -0.02 1.66 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 45 H 0.07 2.30 5.19 -2.39 -0.01 2.29 16 Total: -1.00 -88.41 369.48 5.94 -82.46 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.00 Total: 12.45 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.03 Total: -4.95 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.12 Total: -95.25 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: 0.00 Total: -42.55 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -88.41 5.94 -82.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908340852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.979 kcal (2) G-P(sol) polarization free energy of solvation -88.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds