Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 119.99970 * 2 1 4 4 N 1.46505 * 109.46947 * 126.08389 * 3 2 1 5 5 C 1.46504 * 119.99733 * 94.71138 * 4 3 2 6 6 C 1.50703 * 109.46881 * 264.68574 * 5 4 3 7 7 H 1.07997 * 120.00241 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00037 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46751 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.46898 * 299.99697 * 10 8 6 13 13 H 1.48497 * 109.47232 * 60.00290 * 10 8 6 14 14 C 1.34769 * 120.00316 * 274.71361 * 4 3 2 15 15 O 1.21281 * 120.00385 * 4.70628 * 14 4 3 16 16 C 1.50698 * 119.99979 * 184.71115 * 14 4 3 17 17 H 1.09002 * 110.86280 * 305.76765 * 16 14 4 18 18 C 1.54740 * 110.97339 * 69.56854 * 16 14 4 19 19 C 1.51693 * 102.55036 * 142.33967 * 18 16 14 20 20 C 1.47644 * 125.86359 * 164.60754 * 19 18 16 21 21 C 1.39611 * 120.15212 * 359.72448 * 20 19 18 22 22 C 1.37951 * 119.84990 * 179.76723 * 21 20 19 23 23 C 1.38357 * 120.14674 * 0.48338 * 22 21 20 24 24 C 1.50704 * 119.84730 * 179.74326 * 23 22 21 25 25 C 1.38351 * 120.30456 * 359.76569 * 23 22 21 26 26 C 1.37959 * 120.14954 * 0.02562 * 25 23 22 27 27 N 1.29080 * 108.26892 * 344.59929 * 19 18 16 28 28 O 1.41395 * 112.87083 * 359.68902 * 27 19 18 29 29 H 1.08004 * 120.00277 * 185.05701 * 1 2 3 30 30 H 1.08010 * 120.00318 * 5.06218 * 1 2 3 31 31 H 1.07999 * 120.00185 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46943 * 6.09396 * 3 2 1 33 33 H 1.08991 * 109.47469 * 246.08570 * 3 2 1 34 34 H 1.08997 * 109.47458 * 144.68559 * 5 4 3 35 35 H 1.08998 * 109.47088 * 24.67999 * 5 4 3 36 36 H 0.97001 * 119.99880 * 359.97438 * 9 8 6 37 37 H 1.09005 * 110.79083 * 260.59735 * 18 16 14 38 38 H 1.08995 * 110.79681 * 23.87826 * 18 16 14 39 39 H 1.08000 * 120.07451 * 359.96757 * 21 20 19 40 40 H 1.07999 * 119.92553 * 180.20532 * 22 21 20 41 41 H 1.08994 * 109.47437 * 270.02248 * 24 23 22 42 42 H 1.09002 * 109.47264 * 30.02738 * 24 23 22 43 43 H 1.09002 * 109.46992 * 150.01917 * 24 23 22 44 44 H 1.08009 * 119.92804 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.07511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0121 1.3213 1.1163 5 6 4.4029 0.9137 0.9016 6 6 4.5623 -0.5398 1.2662 7 1 3.7127 -1.1037 1.6219 8 6 5.7927 -1.1500 1.1447 9 7 6.8271 -0.4638 0.7102 10 14 5.9905 -2.9516 1.5974 11 1 7.4000 -3.3650 1.3784 12 1 5.6336 -3.1451 3.0258 13 1 5.0954 -3.7768 0.7472 14 6 2.6055 1.7110 2.3407 15 8 1.4366 1.9664 2.5387 16 6 3.6034 1.8295 3.4637 17 1 4.1580 0.8996 3.5899 18 6 4.5639 3.0196 3.2279 19 6 4.7539 3.5722 4.6277 20 6 5.8127 4.5101 5.0511 21 6 6.7582 4.9628 4.1291 22 6 7.7419 5.8428 4.5303 23 6 7.7988 6.2690 5.8453 24 6 8.8798 7.2259 6.2776 25 6 6.8681 5.8203 6.7655 26 6 5.8765 4.9434 6.3767 27 7 3.8309 3.0817 5.3851 28 8 2.9544 2.2152 4.6923 29 1 -0.5401 -0.9317 0.0824 30 1 -0.5401 0.9317 -0.0825 31 1 1.8499 -0.9353 0.0004 32 1 1.3601 2.1307 0.1091 33 1 2.6058 1.4116 -0.9393 34 1 5.0595 1.5192 1.5262 35 1 4.6655 1.0562 -0.1467 36 1 6.7242 0.4716 0.4748 37 1 5.5125 2.6754 2.8157 38 1 4.1066 3.7623 2.5743 39 1 6.7177 4.6273 3.1033 40 1 8.4720 6.1964 3.8173 41 1 9.7510 6.6629 6.6123 42 1 9.1590 7.8621 5.4377 43 1 8.5111 7.8451 7.0955 44 1 6.9184 6.1565 7.7906 45 1 5.1508 4.5936 7.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908341732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = 27.639469 kcal Electronic energy + Delta-G solvation = -27585.280933 eV Core-core repulsion = 23763.219177 eV Total energy + Delta-G solvation = -3822.061756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52928 -39.42491 -38.45689 -35.66617 -34.14940 -33.77452 -32.42249 -31.60990 -31.33967 -30.46900 -27.25611 -27.16343 -26.04178 -23.98518 -23.05114 -22.44087 -22.29977 -20.07365 -19.64604 -18.89082 -17.50667 -17.14846 -16.37783 -15.92030 -15.70084 -15.44967 -15.30000 -14.92371 -14.49489 -14.10402 -13.91823 -13.75733 -13.71956 -13.64000 -13.18342 -13.07413 -12.86447 -12.67541 -12.57669 -12.49968 -12.17516 -11.90646 -11.52022 -11.50541 -11.50490 -11.28379 -11.02396 -10.83513 -10.76529 -10.46122 -10.23335 -9.90994 -9.35629 -9.30800 -9.14617 -8.90366 -8.62744 -8.43525 -7.90891 -6.63107 -4.40403 0.60658 1.22762 2.20707 2.54262 2.95200 3.14958 3.31861 3.33730 3.51321 3.63775 3.76821 4.09434 4.33683 4.53022 4.63912 4.69132 4.73276 4.82340 4.98370 5.09339 5.11793 5.20543 5.29291 5.32462 5.35572 5.46548 5.49387 5.57893 5.60093 5.74464 5.78804 5.83595 5.86964 5.94587 6.00798 6.24960 6.27159 6.30599 6.36252 6.36509 6.62805 6.73724 7.02563 7.10319 7.21876 7.46416 7.70449 7.91497 8.24078 8.53360 8.70047 9.30085 10.72697 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003588 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.403236 B = 7801.352291 C = 9235.038724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.152 3.848 4 N -0.585 5.585 5 C 0.220 3.780 6 C -0.621 4.621 7 H 0.058 0.942 8 C 0.028 3.972 9 N -0.901 5.901 10 Si 1.065 2.935 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.527 3.473 15 O -0.542 6.542 16 C 0.034 3.966 17 H 0.128 0.872 18 C -0.134 4.134 19 C 0.122 3.878 20 C -0.041 4.041 21 C -0.079 4.079 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.076 4.076 27 N -0.285 5.285 28 O -0.168 6.168 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.283 12.803 4.895 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.173 4.173 3 C 0.029 3.971 4 N -0.317 5.317 5 C 0.100 3.900 6 C -0.659 4.659 7 H 0.076 0.924 8 C -0.178 4.178 9 N -0.536 5.536 10 Si 0.892 3.108 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.313 3.687 15 O -0.420 6.420 16 C -0.028 4.028 17 H 0.145 0.855 18 C -0.173 4.173 19 C -0.067 4.067 20 C -0.042 4.042 21 C -0.099 4.099 22 C -0.141 4.141 23 C -0.072 4.072 24 C -0.173 4.173 25 C -0.144 4.144 26 C -0.096 4.096 27 N -0.024 5.024 28 O -0.188 6.188 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.145 0.855 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.110 11.567 6.125 13.453 hybrid contribution -0.775 0.791 -1.081 1.548 sum 2.335 12.358 5.044 13.551 Atomic orbital electron populations 1.23688 0.95850 1.01262 1.01999 1.23392 0.95950 0.99584 0.98397 1.20397 0.91851 0.95467 0.89393 1.47929 1.12690 1.63696 1.07358 1.19722 0.76312 0.96502 0.97486 1.22334 0.98425 0.95461 1.49704 0.92408 1.25794 0.91818 1.06244 0.93923 1.70868 1.31924 1.10671 1.40130 0.83575 0.76380 0.74176 0.76651 1.20520 1.21166 1.21217 1.19752 0.88264 0.77499 0.83231 1.90661 1.17950 1.51041 1.82311 1.23566 0.93112 1.00114 0.86010 0.85451 1.22946 1.02203 0.96665 0.95523 1.24220 0.94392 0.94782 0.93335 1.17791 0.94324 0.97729 0.94369 1.21293 0.93298 0.95899 0.99451 1.20966 0.98909 0.98464 0.95743 1.20111 0.96296 0.97176 0.93665 1.20842 0.96830 0.97707 1.01969 1.20974 0.95200 0.98572 0.99607 1.21342 0.97840 0.95603 0.94832 1.78334 1.01387 1.03707 1.18987 1.91317 1.35916 1.60624 1.30908 0.88899 0.89022 0.86607 0.90828 0.89963 0.95275 0.95082 0.92229 0.86444 0.88051 0.84968 0.85292 0.90838 0.91324 0.91410 0.85500 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 14.31 29.02 0.42 -2.64 16 2 C -0.15 -2.79 9.81 -36.02 -0.35 -3.14 16 3 C 0.15 2.73 5.81 -5.19 -0.03 2.70 16 4 N -0.58 -11.92 2.46 -176.43 -0.43 -12.35 16 5 C 0.22 4.77 4.22 -5.19 -0.02 4.75 16 6 C -0.62 -15.44 8.84 -34.44 -0.30 -15.75 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.03 0.71 5.46 -17.82 -0.10 0.62 16 9 N -0.90 -24.06 13.65 55.43 0.76 -23.30 16 10 Si 1.06 23.44 29.90 -169.99 -5.08 18.36 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.53 11.39 6.91 -10.99 -0.08 11.31 16 15 O -0.54 -13.03 16.29 -13.30 -0.22 -13.25 16 16 C 0.03 0.68 3.26 -26.97 -0.09 0.59 16 17 H 0.13 2.72 7.46 -51.93 -0.39 2.34 16 18 C -0.13 -2.20 4.84 -26.48 -0.13 -2.33 16 19 C 0.12 1.97 7.16 -79.42 -0.57 1.40 16 20 C -0.04 -0.55 5.87 -105.03 -0.62 -1.17 16 21 C -0.08 -0.91 9.61 -39.17 -0.38 -1.29 16 22 C -0.12 -1.20 9.68 -39.64 -0.38 -1.58 16 23 C -0.07 -0.66 5.89 -104.53 -0.62 -1.28 16 24 C -0.12 -0.75 10.00 36.01 0.36 -0.39 16 25 C -0.13 -1.24 9.68 -39.64 -0.38 -1.63 16 26 C -0.08 -0.93 9.69 -39.17 -0.38 -1.30 16 27 N -0.29 -5.35 12.12 35.30 0.43 -4.92 16 28 O -0.17 -3.61 11.82 -30.23 -0.36 -3.97 16 29 H 0.09 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.09 1.39 7.86 -52.48 -0.41 0.98 16 31 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 33 H 0.08 1.33 7.79 -51.93 -0.40 0.93 16 34 H 0.03 0.62 4.60 -51.93 -0.24 0.38 16 35 H 0.03 0.69 7.66 -51.93 -0.40 0.29 16 36 H 0.27 6.91 7.22 -40.82 -0.29 6.62 16 37 H 0.12 1.81 6.51 -51.93 -0.34 1.47 16 38 H 0.10 1.56 7.90 -51.93 -0.41 1.15 16 39 H 0.13 1.37 7.36 -52.49 -0.39 0.98 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.13 1.60 7.84 -52.49 -0.41 1.18 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -30.93 382.47 -9.01 -39.95 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.22 Total: 4.84 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.65 Total: -11.11 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.75 Total: -40.57 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.57 Total: -17.22 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.08 Total: 18.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.93 -9.01 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.585 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds