Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 119.99970 * 2 1 4 4 N 1.46505 * 109.46947 * 126.08389 * 3 2 1 5 5 C 1.46504 * 119.99733 * 94.71138 * 4 3 2 6 6 C 1.50703 * 109.46881 * 264.68574 * 5 4 3 7 7 H 1.07997 * 120.00241 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00037 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46751 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.46898 * 299.99697 * 10 8 6 13 13 H 1.48497 * 109.47232 * 60.00290 * 10 8 6 14 14 C 1.34769 * 120.00316 * 274.71361 * 4 3 2 15 15 O 1.21281 * 120.00385 * 4.70628 * 14 4 3 16 16 C 1.50698 * 119.99979 * 184.71115 * 14 4 3 17 17 H 1.09002 * 110.86280 * 305.76765 * 16 14 4 18 18 C 1.54740 * 110.97339 * 69.56854 * 16 14 4 19 19 C 1.51693 * 102.55036 * 142.33967 * 18 16 14 20 20 C 1.47644 * 125.86359 * 164.60754 * 19 18 16 21 21 C 1.39611 * 120.15212 * 359.72448 * 20 19 18 22 22 C 1.37951 * 119.84990 * 179.76723 * 21 20 19 23 23 C 1.38357 * 120.14674 * 0.48338 * 22 21 20 24 24 C 1.50704 * 119.84730 * 179.74326 * 23 22 21 25 25 C 1.38351 * 120.30456 * 359.76569 * 23 22 21 26 26 C 1.37959 * 120.14954 * 0.02562 * 25 23 22 27 27 N 1.29080 * 108.26892 * 344.59929 * 19 18 16 28 28 O 1.41395 * 112.87083 * 359.68902 * 27 19 18 29 29 H 1.08004 * 120.00277 * 185.05701 * 1 2 3 30 30 H 1.08010 * 120.00318 * 5.06218 * 1 2 3 31 31 H 1.07999 * 120.00185 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46943 * 6.09396 * 3 2 1 33 33 H 1.08991 * 109.47469 * 246.08570 * 3 2 1 34 34 H 1.08997 * 109.47458 * 144.68559 * 5 4 3 35 35 H 1.08998 * 109.47088 * 24.67999 * 5 4 3 36 36 H 0.97001 * 119.99880 * 359.97438 * 9 8 6 37 37 H 1.09005 * 110.79083 * 260.59735 * 18 16 14 38 38 H 1.08995 * 110.79681 * 23.87826 * 18 16 14 39 39 H 1.08000 * 120.07451 * 359.96757 * 21 20 19 40 40 H 1.07999 * 119.92553 * 180.20532 * 22 21 20 41 41 H 1.08994 * 109.47437 * 270.02248 * 24 23 22 42 42 H 1.09002 * 109.47264 * 30.02738 * 24 23 22 43 43 H 1.09002 * 109.46992 * 150.01917 * 24 23 22 44 44 H 1.08009 * 119.92804 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.07511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0121 1.3213 1.1163 5 6 4.4029 0.9137 0.9016 6 6 4.5623 -0.5398 1.2662 7 1 3.7127 -1.1037 1.6219 8 6 5.7927 -1.1500 1.1447 9 7 6.8271 -0.4638 0.7102 10 14 5.9905 -2.9516 1.5974 11 1 7.4000 -3.3650 1.3784 12 1 5.6336 -3.1451 3.0258 13 1 5.0954 -3.7768 0.7472 14 6 2.6055 1.7110 2.3407 15 8 1.4366 1.9664 2.5387 16 6 3.6034 1.8295 3.4637 17 1 4.1580 0.8996 3.5899 18 6 4.5639 3.0196 3.2279 19 6 4.7539 3.5722 4.6277 20 6 5.8127 4.5101 5.0511 21 6 6.7582 4.9628 4.1291 22 6 7.7419 5.8428 4.5303 23 6 7.7988 6.2690 5.8453 24 6 8.8798 7.2259 6.2776 25 6 6.8681 5.8203 6.7655 26 6 5.8765 4.9434 6.3767 27 7 3.8309 3.0817 5.3851 28 8 2.9544 2.2152 4.6923 29 1 -0.5401 -0.9317 0.0824 30 1 -0.5401 0.9317 -0.0825 31 1 1.8499 -0.9353 0.0004 32 1 1.3601 2.1307 0.1091 33 1 2.6058 1.4116 -0.9393 34 1 5.0595 1.5192 1.5262 35 1 4.6655 1.0562 -0.1467 36 1 6.7242 0.4716 0.4748 37 1 5.5125 2.6754 2.8157 38 1 4.1066 3.7623 2.5743 39 1 6.7177 4.6273 3.1033 40 1 8.4720 6.1964 3.8173 41 1 9.7510 6.6629 6.6123 42 1 9.1590 7.8621 5.4377 43 1 8.5111 7.8451 7.0955 44 1 6.9184 6.1565 7.7906 45 1 5.1508 4.5936 7.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908341732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = 12.627672 kcal Electronic energy + Delta-G solvation = -27585.931893 eV Core-core repulsion = 23763.219177 eV Total energy + Delta-G solvation = -3822.712716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99348 -40.55816 -39.80124 -37.36949 -35.45895 -35.24640 -34.15462 -32.64760 -32.37832 -31.71806 -28.99160 -28.01697 -27.53892 -25.57949 -24.69557 -23.36490 -23.31075 -21.37858 -20.92770 -20.43563 -19.32799 -18.57841 -17.92959 -17.35338 -17.06373 -16.74968 -16.29750 -16.04054 -15.80826 -15.64585 -15.35313 -15.13649 -14.76708 -14.67575 -14.46261 -14.44149 -14.30885 -14.08486 -13.93244 -13.73769 -13.30499 -13.15901 -13.00200 -12.81167 -12.66143 -12.48567 -12.34539 -12.28631 -12.14112 -11.97631 -11.73070 -11.36427 -11.19513 -10.82520 -10.58243 -10.32296 -9.97071 -9.66190 -9.44799 -8.64488 -6.42517 -0.40740 0.40953 1.06905 1.10289 1.38856 1.54195 1.56683 1.62131 1.77197 2.28490 2.51592 2.76838 2.78215 3.10906 3.19940 3.25073 3.43406 3.81183 3.91127 3.95766 3.97504 4.01503 4.15765 4.23481 4.32685 4.37223 4.40135 4.45230 4.55934 4.58441 4.64495 4.80945 4.82740 4.86092 4.90223 4.98579 5.09271 5.27175 5.38033 5.39340 5.49677 5.60914 5.64530 5.76239 5.79653 5.95110 6.05468 6.08727 6.37040 6.55005 6.99673 7.31995 8.72298 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003588 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.403236 B = 7801.352291 C = 9235.038724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.182 4.182 3 C 0.147 3.853 4 N -0.581 5.581 5 C 0.228 3.772 6 C -0.624 4.624 7 H 0.039 0.961 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 1.099 2.901 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.525 3.475 15 O -0.570 6.570 16 C 0.032 3.968 17 H 0.108 0.892 18 C -0.125 4.125 19 C 0.146 3.854 20 C -0.074 4.074 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.062 4.062 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.085 4.085 27 N -0.316 5.316 28 O -0.206 6.206 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.152 0.848 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 14.459 4.849 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C 0.025 3.975 4 N -0.311 5.311 5 C 0.108 3.892 6 C -0.662 4.662 7 H 0.057 0.943 8 C -0.210 4.210 9 N -0.557 5.557 10 Si 0.923 3.077 11 H -0.204 1.204 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.311 3.689 15 O -0.451 6.451 16 C -0.030 4.030 17 H 0.125 0.875 18 C -0.165 4.165 19 C -0.042 4.042 20 C -0.075 4.075 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.063 4.063 24 C -0.173 4.173 25 C -0.146 4.146 26 C -0.105 4.105 27 N -0.059 5.059 28 O -0.222 6.222 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.173 0.827 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.169 0.831 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.657 13.211 6.049 15.258 hybrid contribution -1.193 0.408 -1.042 1.635 sum 3.464 13.619 5.008 14.918 Atomic orbital electron populations 1.23932 0.95188 1.02665 0.98821 1.23274 0.96728 0.98743 1.01417 1.20600 0.91866 0.95793 0.89230 1.47950 1.12622 1.62828 1.07714 1.19549 0.77218 0.95055 0.97405 1.22480 0.97702 0.96910 1.49139 0.94271 1.26734 0.91783 1.08806 0.93655 1.70938 1.32353 1.10848 1.41583 0.83114 0.76466 0.71332 0.76830 1.20425 1.20689 1.20128 1.20006 0.88114 0.77048 0.83721 1.90625 1.19059 1.52562 1.82827 1.23441 0.93290 1.00656 0.85587 0.87486 1.22920 1.01805 0.95608 0.96128 1.24689 0.93534 0.93377 0.92631 1.17885 0.94909 0.99093 0.95659 1.21483 0.93113 0.95988 0.99525 1.21325 0.98707 0.97667 0.96665 1.20557 0.96137 0.96319 0.93257 1.20934 0.96008 0.97391 1.02998 1.21274 0.94459 0.97733 1.01097 1.21426 0.98556 0.96275 0.94262 1.78365 1.02972 1.05579 1.19002 1.91276 1.37638 1.61845 1.31452 0.87236 0.87741 0.88548 0.90124 0.88242 0.94306 0.95018 0.92491 0.85293 0.86685 0.84160 0.82658 0.89806 0.89983 0.90154 0.83066 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 14.31 67.79 0.97 -4.25 16 2 C -0.18 -6.59 9.81 25.66 0.25 -6.33 16 3 C 0.15 5.25 5.81 85.63 0.50 5.75 16 4 N -0.58 -23.84 2.46 -830.50 -2.05 -25.89 16 5 C 0.23 9.95 4.22 85.63 0.36 10.31 16 6 C -0.62 -31.40 8.84 25.60 0.23 -31.17 16 7 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 8 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 9 N -0.92 -48.95 13.65 21.45 0.29 -48.66 16 10 Si 1.10 47.21 29.90 68.60 2.05 49.26 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 14 C 0.52 23.19 6.91 87.66 0.61 23.80 16 15 O -0.57 -28.04 16.29 15.00 0.24 -27.80 16 16 C 0.03 1.34 3.26 30.44 0.10 1.44 16 17 H 0.11 4.82 7.46 -2.39 -0.02 4.80 16 18 C -0.13 -4.15 4.84 30.76 0.15 -4.00 16 19 C 0.15 4.80 7.16 45.77 0.33 5.13 16 20 C -0.07 -1.95 5.87 -20.13 -0.12 -2.07 16 21 C -0.08 -1.72 9.61 22.53 0.22 -1.50 16 22 C -0.13 -2.08 9.68 22.23 0.22 -1.86 16 23 C -0.06 -0.94 5.89 -19.81 -0.12 -1.06 16 24 C -0.12 -1.01 10.00 71.24 0.71 -0.30 16 25 C -0.13 -2.24 9.68 22.23 0.22 -2.02 16 26 C -0.09 -2.01 9.69 22.54 0.22 -1.79 16 27 N -0.32 -12.34 12.12 -42.23 -0.51 -12.85 16 28 O -0.21 -9.30 11.82 -20.29 -0.24 -9.54 16 29 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.10 2.98 7.86 -2.91 -0.02 2.96 16 31 H 0.10 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.08 2.77 7.31 -2.39 -0.02 2.75 16 33 H 0.10 3.15 7.79 -2.39 -0.02 3.13 16 34 H 0.04 1.64 4.60 -2.39 -0.01 1.63 16 35 H 0.03 1.40 7.66 -2.39 -0.02 1.38 16 36 H 0.27 13.66 7.22 -92.71 -0.67 12.99 16 37 H 0.13 3.94 6.51 -2.38 -0.02 3.92 16 38 H 0.12 3.50 7.90 -2.39 -0.02 3.48 16 39 H 0.14 2.65 7.36 -2.91 -0.02 2.63 16 40 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 43 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.12 3.06 7.84 -2.91 -0.02 3.03 16 Total: -1.00 -67.69 382.47 6.17 -61.52 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 1.09 Total: 23.86 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.29 Total: -9.90 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.27 Total: -87.40 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: 0.00 Total: -37.34 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.26 kcal Total: -67.69 6.17 -61.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.143 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds