Wall clock time and date at job start Tue Mar 31 2020 15:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99737 * 180.02562 * 4 3 2 7 7 C 1.45201 * 116.99523 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47020 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46852 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46868 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00153 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47315 * 119.99772 * 14 12 10 17 17 H 1.48499 * 109.47439 * 240.00097 * 14 12 10 18 18 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 19 19 N 1.30434 * 108.01213 * 359.97438 * 18 3 2 20 20 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75033 * 359.97104 * 20 2 1 22 22 C 1.50699 * 109.46911 * 270.03058 * 21 20 2 23 23 C 1.38238 * 120.00035 * 269.72308 * 22 21 20 24 24 C 1.38239 * 120.00005 * 179.77135 * 23 22 21 25 25 C 1.38234 * 119.99811 * 0.50146 * 24 23 22 26 26 C 1.38234 * 120.00337 * 359.75561 * 25 24 23 27 27 C 1.38233 * 120.00085 * 90.00025 * 22 21 20 28 28 H 1.08999 * 109.47289 * 89.97614 * 1 2 3 29 29 H 1.09005 * 109.47225 * 209.97467 * 1 2 3 30 30 H 1.08994 * 109.47238 * 329.97143 * 1 2 3 31 31 H 1.08999 * 109.47618 * 299.99803 * 7 6 4 32 32 H 1.09001 * 109.47168 * 59.99578 * 7 6 4 33 33 H 1.08992 * 109.47273 * 299.99902 * 8 7 6 34 34 H 1.08996 * 109.46755 * 60.00358 * 8 7 6 35 35 H 1.08993 * 109.47564 * 299.99808 * 9 8 7 36 36 H 1.08996 * 109.47178 * 60.00580 * 9 8 7 37 37 H 0.97006 * 120.00301 * 180.02562 * 13 12 10 38 38 H 1.08000 * 125.99724 * 180.02562 * 18 3 2 39 39 H 1.09000 * 109.46857 * 30.02585 * 21 20 2 40 40 H 1.08993 * 109.47128 * 150.02802 * 21 20 2 41 41 H 1.07996 * 119.99599 * 359.97438 * 23 22 21 42 42 H 1.07999 * 120.00117 * 180.23217 * 24 23 22 43 43 H 1.07996 * 120.00246 * 179.72490 * 25 24 23 44 44 H 1.07995 * 120.00387 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00018 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 6 3.4746 5.8499 -0.0018 9 6 2.9443 7.2850 -0.0023 10 6 4.1030 8.2486 -0.0027 11 1 5.1162 7.8748 -0.0030 12 6 3.8695 9.6075 -0.0037 13 7 2.6357 10.0627 -0.0038 14 14 5.3057 10.8020 -0.0049 15 1 6.5815 10.0420 -0.0039 16 1 5.2386 11.6557 -1.2180 17 1 5.2390 11.6577 1.2070 18 6 3.6598 0.6496 -0.0006 19 7 3.6339 -0.6545 -0.0004 20 7 2.3015 -1.0819 -0.0005 21 6 1.8498 -2.4755 -0.0005 22 6 1.6948 -2.9533 1.4203 23 6 2.7608 -3.5467 2.0702 24 6 2.6200 -3.9807 3.3751 25 6 1.4101 -3.8306 4.0266 26 6 0.3425 -3.2420 3.3751 27 6 0.4849 -2.8033 2.0718 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.6906 5.0338 -0.8923 32 1 1.6900 5.0349 0.8876 33 1 4.0819 5.6877 0.8886 34 1 4.0830 5.6866 -0.8913 35 1 2.3368 7.4476 -0.8925 36 1 2.3361 7.4480 0.8874 37 1 2.4715 11.0188 -0.0049 38 1 4.5460 1.2668 -0.0004 39 1 0.8911 -2.5466 -0.5144 40 1 2.5843 -3.0955 -0.5143 41 1 3.7046 -3.6683 1.5595 42 1 3.4540 -4.4410 3.8841 43 1 1.2988 -4.1737 5.0446 44 1 -0.6029 -3.1252 3.8839 45 1 -0.3492 -2.3433 1.5628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915534742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:32 Heat of formation + Delta-G solvation = -2.693446 kcal Electronic energy + Delta-G solvation = -26150.935863 eV Core-core repulsion = 22327.558773 eV Total energy + Delta-G solvation = -3823.377090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76025 -39.80570 -39.44761 -36.23349 -34.74792 -33.90374 -32.51793 -31.69362 -31.37742 -30.97809 -28.12772 -26.89682 -26.61366 -23.71879 -23.15102 -22.42476 -22.28883 -20.69909 -20.30667 -19.54819 -17.88271 -17.33430 -16.61079 -16.33250 -16.07134 -15.93807 -15.84597 -15.38064 -15.13132 -14.53962 -14.43757 -13.98639 -13.92224 -13.51028 -13.45609 -13.18908 -13.05188 -12.98489 -12.74843 -12.46980 -12.15249 -12.02103 -11.80294 -11.70830 -11.46405 -11.03077 -10.94949 -10.59324 -10.54006 -10.28222 -10.18945 -9.68141 -9.64876 -9.46898 -9.40834 -9.36274 -9.10624 -8.85808 -8.35710 -6.00316 -4.02875 0.65803 0.91658 1.23956 2.00354 2.09167 3.11732 3.29705 3.32508 3.33549 3.39882 3.44570 4.02197 4.08466 4.27265 4.39331 4.46619 4.50522 4.59083 4.68288 4.80696 4.89572 4.99998 5.08050 5.10155 5.23041 5.35761 5.39187 5.43261 5.53087 5.63264 5.67766 5.71969 5.78875 5.94181 6.00834 6.03291 6.10615 6.26260 6.46514 6.53728 6.61851 6.63954 6.94785 7.06456 7.34353 7.65253 7.76621 7.98620 8.14291 8.40419 9.03776 9.61207 11.11176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.001858 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.636175 B =15063.095495 C =15210.796728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.280 4.280 4 C 0.540 3.460 5 O -0.524 6.524 6 O -0.354 6.354 7 C 0.071 3.929 8 C -0.109 4.109 9 C 0.023 3.977 10 C -0.519 4.519 11 H 0.058 0.942 12 C 0.055 3.945 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.107 3.893 19 N -0.299 5.299 20 N -0.356 5.356 21 C 0.171 3.829 22 C -0.121 4.121 23 C -0.089 4.089 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.102 4.102 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.199 0.801 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -33.168 3.373 33.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.033 3.967 3 C -0.292 4.292 4 C 0.385 3.615 5 O -0.415 6.415 6 O -0.270 6.270 7 C -0.002 4.002 8 C -0.147 4.147 9 C -0.014 4.014 10 C -0.558 4.558 11 H 0.076 0.924 12 C -0.146 4.146 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.081 4.081 19 N -0.117 5.117 20 N -0.135 5.135 21 C 0.051 3.949 22 C -0.122 4.122 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.121 4.121 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.216 0.784 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.585 -34.101 3.347 34.570 hybrid contribution 0.194 1.600 0.084 1.614 sum -4.391 -32.500 3.431 32.975 Atomic orbital electron populations 1.20834 0.86118 1.05063 1.04399 1.21444 0.94818 0.86233 0.94161 1.19149 0.93486 0.90679 1.25921 1.19880 0.83902 0.85218 0.72451 1.90773 1.18081 1.84839 1.47814 1.86529 1.39586 1.17273 1.83607 1.23463 0.98887 0.75746 1.02075 1.21756 0.95641 0.95305 1.01954 1.19056 0.96838 0.87814 0.97672 1.21225 0.92939 0.90926 1.50671 0.92365 1.25036 0.95697 0.98545 0.95287 1.69974 1.18982 1.13679 1.50760 0.86497 0.82691 0.81032 0.77555 1.19666 1.21010 1.21016 1.24232 0.97587 0.91440 0.94846 1.77224 0.95615 1.13290 1.25554 1.48498 1.04205 1.05412 1.55402 1.20636 1.02061 0.77815 0.94419 1.19948 0.94821 1.01380 0.96005 1.21113 0.98056 0.96684 0.94873 1.21209 0.97801 1.00214 0.94805 1.21278 0.93182 0.98244 0.99969 1.21181 0.99258 0.98766 0.94748 1.21162 0.96868 0.98853 0.95190 0.89183 0.90982 0.87309 0.91571 0.91598 0.92159 0.92147 0.96227 0.96233 0.92992 0.78428 0.87696 0.87255 0.85562 0.85680 0.85783 0.85615 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.34 36.01 0.34 -0.59 16 2 C 0.17 1.89 7.01 -81.59 -0.57 1.32 16 3 C -0.28 -3.89 6.13 -105.08 -0.64 -4.54 16 4 C 0.54 8.99 7.95 34.41 0.27 9.26 16 5 O -0.52 -9.51 14.63 -19.28 -0.28 -9.79 16 6 O -0.35 -6.24 10.07 -40.63 -0.41 -6.65 16 7 C 0.07 1.36 5.48 37.16 0.20 1.56 16 8 C -0.11 -2.31 5.53 -26.73 -0.15 -2.45 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 C 0.11 1.35 11.87 -16.97 -0.20 1.15 16 19 N -0.30 -3.65 12.50 30.87 0.39 -3.26 16 20 N -0.36 -3.66 3.56 -57.77 -0.21 -3.87 16 21 C 0.17 1.13 6.15 -5.20 -0.03 1.10 16 22 C -0.12 -0.87 5.46 -104.62 -0.57 -1.44 16 23 C -0.09 -0.66 9.70 -39.58 -0.38 -1.04 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.11 -0.70 10.05 -39.58 -0.40 -1.10 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.10 -0.69 9.47 -39.58 -0.37 -1.06 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.42 5.25 -51.93 -0.27 0.15 16 30 H 0.11 1.17 6.51 -51.93 -0.34 0.83 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.10 0.43 7.56 -51.93 -0.39 0.04 16 40 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.13 0.62 5.92 -52.49 -0.31 0.31 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -34.27 385.32 -9.19 -43.46 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.35 Total: -2.75 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.86 Total: -13.38 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.92 Total: -33.44 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.69 Total: -16.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.27 -9.19 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915534742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.770 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds