Wall clock time and date at job start Tue Mar 31 2020 15:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99737 * 180.02562 * 4 3 2 7 7 C 1.45201 * 116.99523 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47020 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46852 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46868 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00153 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00176 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47315 * 119.99772 * 14 12 10 17 17 H 1.48499 * 109.47439 * 240.00097 * 14 12 10 18 18 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 19 19 N 1.30434 * 108.01213 * 359.97438 * 18 3 2 20 20 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75033 * 359.97104 * 20 2 1 22 22 C 1.50699 * 109.46911 * 270.03058 * 21 20 2 23 23 C 1.38238 * 120.00035 * 269.72308 * 22 21 20 24 24 C 1.38239 * 120.00005 * 179.77135 * 23 22 21 25 25 C 1.38234 * 119.99811 * 0.50146 * 24 23 22 26 26 C 1.38234 * 120.00337 * 359.75561 * 25 24 23 27 27 C 1.38233 * 120.00085 * 90.00025 * 22 21 20 28 28 H 1.08999 * 109.47289 * 89.97614 * 1 2 3 29 29 H 1.09005 * 109.47225 * 209.97467 * 1 2 3 30 30 H 1.08994 * 109.47238 * 329.97143 * 1 2 3 31 31 H 1.08999 * 109.47618 * 299.99803 * 7 6 4 32 32 H 1.09001 * 109.47168 * 59.99578 * 7 6 4 33 33 H 1.08992 * 109.47273 * 299.99902 * 8 7 6 34 34 H 1.08996 * 109.46755 * 60.00358 * 8 7 6 35 35 H 1.08993 * 109.47564 * 299.99808 * 9 8 7 36 36 H 1.08996 * 109.47178 * 60.00580 * 9 8 7 37 37 H 0.97006 * 120.00301 * 180.02562 * 13 12 10 38 38 H 1.08000 * 125.99724 * 180.02562 * 18 3 2 39 39 H 1.09000 * 109.46857 * 30.02585 * 21 20 2 40 40 H 1.08993 * 109.47128 * 150.02802 * 21 20 2 41 41 H 1.07996 * 119.99599 * 359.97438 * 23 22 21 42 42 H 1.07999 * 120.00117 * 180.23217 * 24 23 22 43 43 H 1.07996 * 120.00246 * 179.72490 * 25 24 23 44 44 H 1.07995 * 120.00387 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00018 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 6 3.4746 5.8499 -0.0018 9 6 2.9443 7.2850 -0.0023 10 6 4.1030 8.2486 -0.0027 11 1 5.1162 7.8748 -0.0030 12 6 3.8695 9.6075 -0.0037 13 7 2.6357 10.0627 -0.0038 14 14 5.3057 10.8020 -0.0049 15 1 6.5815 10.0420 -0.0039 16 1 5.2386 11.6557 -1.2180 17 1 5.2390 11.6577 1.2070 18 6 3.6598 0.6496 -0.0006 19 7 3.6339 -0.6545 -0.0004 20 7 2.3015 -1.0819 -0.0005 21 6 1.8498 -2.4755 -0.0005 22 6 1.6948 -2.9533 1.4203 23 6 2.7608 -3.5467 2.0702 24 6 2.6200 -3.9807 3.3751 25 6 1.4101 -3.8306 4.0266 26 6 0.3425 -3.2420 3.3751 27 6 0.4849 -2.8033 2.0718 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.6906 5.0338 -0.8923 32 1 1.6900 5.0349 0.8876 33 1 4.0819 5.6877 0.8886 34 1 4.0830 5.6866 -0.8913 35 1 2.3368 7.4476 -0.8925 36 1 2.3361 7.4480 0.8874 37 1 2.4715 11.0188 -0.0049 38 1 4.5460 1.2668 -0.0004 39 1 0.8911 -2.5466 -0.5144 40 1 2.5843 -3.0955 -0.5143 41 1 3.7046 -3.6683 1.5595 42 1 3.4540 -4.4410 3.8841 43 1 1.2988 -4.1737 5.0446 44 1 -0.6029 -3.1252 3.8839 45 1 -0.3492 -2.3433 1.5628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915534742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:31 Heat of formation + Delta-G solvation = -20.319279 kcal Electronic energy + Delta-G solvation = -26151.700176 eV Core-core repulsion = 22327.558773 eV Total energy + Delta-G solvation = -3824.141403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65901 -40.99033 -40.08905 -37.66620 -35.90543 -35.39727 -33.65368 -33.31586 -31.85696 -31.74405 -29.36849 -28.36765 -27.34439 -25.38855 -23.87490 -23.53267 -22.92015 -22.12361 -21.63005 -20.52203 -18.92858 -18.53923 -17.95333 -17.59643 -17.45383 -16.84831 -16.58519 -16.47171 -16.08718 -15.87422 -15.44314 -15.27258 -14.77382 -14.47034 -14.27436 -14.12762 -14.05349 -13.73797 -13.69466 -13.68878 -13.54998 -13.32150 -13.20331 -12.83379 -12.48470 -12.35473 -12.22463 -12.02733 -11.96883 -11.90100 -11.66088 -11.35735 -11.33870 -11.17807 -10.56420 -10.49099 -9.91217 -9.89147 -9.80097 -8.20389 -6.31509 0.10103 0.30000 0.43172 0.98743 1.31827 1.42468 1.42564 1.56371 1.85554 2.13370 2.42781 2.83127 3.13391 3.39587 3.49841 3.58946 3.79135 3.84329 3.94100 4.05532 4.05924 4.12402 4.21772 4.32783 4.36923 4.40232 4.47388 4.53514 4.59093 4.64199 4.80108 4.83889 4.93525 4.99344 5.04206 5.09227 5.11370 5.31382 5.47166 5.47672 5.52343 5.56128 5.57791 5.66849 5.77008 5.82341 6.01520 6.21392 6.42880 6.81753 6.85733 7.37706 8.92018 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.001858 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.636175 B =15063.095495 C =15210.796728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.177 3.823 3 C -0.313 4.313 4 C 0.538 3.462 5 O -0.545 6.545 6 O -0.355 6.355 7 C 0.082 3.918 8 C -0.094 4.094 9 C 0.026 3.974 10 C -0.541 4.541 11 H 0.065 0.935 12 C -0.003 4.003 13 N -0.933 5.933 14 Si 0.969 3.031 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.103 3.897 19 N -0.311 5.311 20 N -0.346 5.346 21 C 0.163 3.837 22 C -0.130 4.130 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.117 4.117 26 C -0.132 4.132 27 C -0.110 4.110 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H -0.002 1.002 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.209 0.791 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -34.801 3.429 35.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.043 3.957 3 C -0.326 4.326 4 C 0.386 3.614 5 O -0.438 6.438 6 O -0.271 6.271 7 C 0.008 3.992 8 C -0.131 4.131 9 C -0.011 4.011 10 C -0.579 4.579 11 H 0.083 0.917 12 C -0.200 4.200 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.085 4.085 19 N -0.129 5.129 20 N -0.124 5.124 21 C 0.044 3.956 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.153 4.153 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.128 4.128 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.185 -35.782 3.405 36.187 hybrid contribution 0.011 1.950 0.105 1.953 sum -4.174 -33.832 3.509 34.269 Atomic orbital electron populations 1.20925 0.84160 1.05601 1.05564 1.21804 0.95941 0.85809 0.92165 1.19150 0.94743 0.89648 1.29059 1.20327 0.83509 0.85847 0.71743 1.90757 1.18741 1.85152 1.49113 1.86508 1.39909 1.16681 1.84012 1.23104 0.97680 0.76604 1.01793 1.21453 0.96184 0.92977 1.02507 1.18937 0.95934 0.90767 0.95502 1.21658 0.93769 0.91859 1.50637 0.91714 1.26016 0.98673 1.00664 0.94682 1.70104 1.21338 1.14323 1.51575 0.85335 0.79228 0.78355 0.77737 1.18426 1.20376 1.20407 1.24430 0.97627 0.91770 0.94663 1.77190 0.96991 1.12964 1.25766 1.48813 1.03378 1.06479 1.53752 1.21057 1.03933 0.75858 0.94732 1.20034 0.95068 1.01746 0.96272 1.21294 0.98401 0.97219 0.95361 1.21457 0.98550 1.00375 0.94879 1.21575 0.93092 0.98009 1.00847 1.21495 1.00033 0.98506 0.94973 1.21435 0.97221 0.98717 0.95436 0.87562 0.87799 0.89353 0.91863 0.91987 0.91565 0.91479 0.98399 0.98452 0.92701 0.77446 0.84624 0.86106 0.85464 0.84505 0.84177 0.83979 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.34 71.24 0.67 -0.93 16 2 C 0.18 3.76 7.01 42.16 0.30 4.06 16 3 C -0.31 -8.56 6.13 -20.16 -0.12 -8.69 16 4 C 0.54 17.99 7.95 70.20 0.56 18.55 16 5 O -0.55 -19.97 14.63 19.77 0.29 -19.68 16 6 O -0.35 -12.57 10.07 -56.64 -0.57 -13.14 16 7 C 0.08 3.17 5.48 71.98 0.39 3.56 16 8 C -0.09 -4.00 5.53 30.60 0.17 -3.83 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 11 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 12 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 13 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 14 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 C 0.10 2.54 11.87 85.66 1.02 3.56 16 19 N -0.31 -7.24 12.50 -56.25 -0.70 -7.94 16 20 N -0.35 -6.45 3.56 -336.68 -1.20 -7.65 16 21 C 0.16 1.73 6.15 85.63 0.53 2.26 16 22 C -0.13 -1.62 5.46 -19.87 -0.11 -1.73 16 23 C -0.10 -1.42 9.70 22.27 0.22 -1.20 16 24 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.12 -1.34 10.05 22.27 0.22 -1.11 16 26 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 27 C -0.11 -1.21 9.47 22.27 0.21 -1.00 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 0.87 5.25 -2.38 -0.01 0.85 16 30 H 0.09 1.81 6.51 -2.39 -0.02 1.79 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 38 H 0.21 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.14 0.61 7.56 -2.39 -0.02 0.59 16 40 H 0.12 1.03 8.08 -2.39 -0.02 1.02 16 41 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.14 0.94 5.92 -2.91 -0.02 0.92 16 Total: -1.00 -74.14 385.32 6.46 -67.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.99 Total: 9.32 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.34 Total: -18.17 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.62 Total: -72.57 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.28 Total: -32.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -74.14 6.46 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915534742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds