Wall clock time and date at job start Tue Mar 31 2020 15:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35454 * 126.77778 * 2 1 4 4 C 1.41376 * 103.98801 * 180.10100 * 3 2 1 5 5 C 1.50703 * 126.80496 * 179.88937 * 4 3 2 6 6 C 1.52996 * 109.47453 * 124.70698 * 5 4 3 7 7 C 1.50698 * 109.47165 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00283 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99942 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00162 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46620 * 35.00730 * 10 9 7 12 12 C 1.52996 * 109.46928 * 155.00175 * 10 9 7 13 13 C 1.50702 * 109.47159 * 295.00193 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.50695 * 109.47337 * 275.00418 * 10 9 7 22 22 C 1.38233 * 120.00093 * 319.72581 * 21 10 9 23 23 C 1.38241 * 120.00133 * 179.79073 * 22 21 10 24 24 C 1.38229 * 119.99727 * 0.43877 * 23 22 21 25 25 C 1.38236 * 119.99976 * 359.81143 * 24 23 22 26 26 C 1.38231 * 120.00171 * 359.97438 * 25 24 23 27 27 N 1.30174 * 106.39550 * 359.62437 * 4 3 2 28 28 O 1.20929 * 111.60404 * 0.24226 * 27 4 3 29 29 H 1.08995 * 109.47339 * 180.30346 * 1 2 3 30 30 H 1.09000 * 109.47048 * 300.30228 * 1 2 3 31 31 H 1.08998 * 109.47439 * 60.29689 * 1 2 3 32 32 H 1.08003 * 128.00939 * 359.96301 * 3 2 1 33 33 H 1.09002 * 109.46659 * 4.70339 * 5 4 3 34 34 H 1.09002 * 109.46999 * 244.71147 * 5 4 3 35 35 H 1.09002 * 109.46744 * 60.00247 * 6 5 4 36 36 H 1.09003 * 109.46864 * 300.00214 * 6 5 4 37 37 H 0.97001 * 119.99887 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47066 * 175.00396 * 12 10 9 39 39 H 1.08994 * 109.47405 * 55.00227 * 12 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.00198 * 359.97438 * 22 21 10 42 42 H 1.07998 * 119.99639 * 180.27390 * 23 22 21 43 43 H 1.07997 * 119.99947 * 179.83467 * 24 23 22 44 44 H 1.08002 * 120.00040 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0058 6 6 5.7792 0.8507 1.1785 7 6 7.0786 1.6139 1.1754 8 8 7.2971 2.4359 0.3109 9 7 7.9980 1.3830 2.1335 10 6 9.2615 2.1245 2.1302 11 1 9.0863 3.1393 1.7730 12 6 9.8271 2.1745 3.5509 13 6 8.9000 2.9703 4.4330 14 1 7.9974 3.3974 4.0216 15 6 9.2009 3.1480 5.7668 16 7 8.3891 3.8379 6.5379 17 14 10.7618 2.4088 6.4786 18 1 11.8737 3.3852 6.3535 19 1 10.5469 2.0842 7.9117 20 1 11.1056 1.1693 5.7365 21 6 10.2463 1.4351 1.2214 22 6 10.3249 0.0551 1.2073 23 6 11.2252 -0.5775 0.3705 24 6 12.0532 0.1703 -0.4456 25 6 11.9782 1.5505 -0.4277 26 6 11.0749 2.1829 0.4059 27 7 3.4764 -0.7563 0.0046 28 8 2.3094 -1.0736 0.0060 29 1 -0.3634 -1.0276 0.0054 30 1 -0.3633 0.5185 0.8873 31 1 -0.3634 0.5092 -0.8926 32 1 2.0345 2.1271 -0.0005 33 1 4.7162 2.3673 0.0782 34 1 5.4546 1.1046 -0.9360 35 1 5.9841 -0.2166 1.0944 36 1 5.2456 1.0462 2.1087 37 1 7.8234 0.7253 2.8247 38 1 10.8088 2.6480 3.5347 39 1 9.9191 1.1610 3.9413 40 1 8.6010 3.9632 7.4761 41 1 9.6808 -0.5291 1.8479 42 1 11.2834 -1.6558 0.3563 43 1 12.7585 -0.3238 -1.0974 44 1 12.6255 2.1348 -1.0650 45 1 11.0160 3.2612 0.4195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935027518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:01 Heat of formation + Delta-G solvation = 31.099341 kcal Electronic energy + Delta-G solvation = -26860.183537 eV Core-core repulsion = 23038.271813 eV Total energy + Delta-G solvation = -3821.911724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.01162 -39.73840 -38.53944 -35.64795 -35.01635 -33.69241 -32.68553 -31.78345 -30.84655 -30.51630 -29.30480 -28.01959 -25.88161 -24.42630 -23.11103 -22.33489 -21.77769 -20.49319 -19.77773 -19.56032 -17.74612 -17.40963 -17.16821 -16.57728 -16.36995 -15.56227 -15.35848 -14.87679 -14.58947 -14.34416 -14.14620 -13.97361 -13.58531 -13.47310 -13.34820 -13.10193 -12.85272 -12.77668 -12.64506 -12.43628 -12.34223 -12.13435 -11.78108 -11.54594 -11.35607 -11.08419 -10.91376 -10.74160 -10.64768 -10.18400 -10.09573 -9.86731 -9.48650 -9.39066 -9.30348 -8.65148 -8.61545 -8.48864 -8.30371 -6.13197 -4.12956 1.33981 1.67485 1.70579 2.13150 2.97899 3.11188 3.24555 3.32864 3.35169 3.66154 4.10365 4.16857 4.33620 4.36443 4.85222 4.93276 5.04382 5.06527 5.13039 5.14967 5.18522 5.20287 5.22185 5.29304 5.36875 5.44046 5.49807 5.62557 5.67769 5.81305 5.83276 5.90210 5.99519 6.05192 6.13578 6.23642 6.30864 6.42286 6.73178 6.76108 6.80136 6.92678 7.04816 7.30127 7.33265 7.63235 8.07939 8.19306 8.41869 8.73560 8.92275 9.47744 10.99546 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.003257 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.529899 B = 8593.607293 C =10785.077698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.231 4.231 4 C 0.027 3.973 5 C -0.024 4.024 6 C -0.136 4.136 7 C 0.515 3.485 8 O -0.551 6.551 9 N -0.700 5.700 10 C 0.194 3.806 11 H 0.092 0.908 12 C -0.014 4.014 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.076 4.076 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.107 4.107 27 N -0.365 5.365 28 O 0.096 5.904 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 -8.988 -13.550 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.252 4.252 4 C -0.132 4.132 5 C -0.063 4.063 6 C -0.177 4.177 7 C 0.301 3.699 8 O -0.429 6.429 9 N -0.349 5.349 10 C 0.090 3.910 11 H 0.110 0.890 12 C -0.052 4.052 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.126 4.126 27 N -0.070 5.070 28 O 0.030 5.970 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.189 0.811 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.236 0.764 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.913 -9.361 -13.952 18.572 hybrid contribution 0.427 0.160 0.970 1.072 sum -7.486 -9.201 -12.983 17.585 Atomic orbital electron populations 1.20321 0.84139 1.04554 1.04070 1.24494 0.96361 0.86338 1.02948 1.22468 0.91396 1.01114 1.10241 1.23666 0.97530 0.89967 1.02025 1.19731 0.88182 0.98990 0.99360 1.21591 0.94330 1.01399 1.00355 1.20393 0.85048 0.82962 0.81495 1.90659 1.79406 1.35315 1.37549 1.45898 1.17455 1.42496 1.29074 1.19947 0.80570 0.94549 0.95952 0.88999 1.19873 0.97226 0.97912 0.90153 1.21012 1.08335 1.33078 0.93434 0.90619 1.24987 0.96426 0.94659 0.97037 1.69903 1.37058 1.40328 1.06322 0.86855 0.84130 0.80382 0.78389 1.20197 1.21340 1.18962 1.20580 0.96896 0.94006 0.96292 1.20938 0.98644 0.94261 0.98918 1.21060 0.96731 0.99383 0.97136 1.21019 0.99927 0.94171 1.00049 1.21064 0.98996 0.94643 0.99365 1.21043 0.95792 1.00059 0.95706 1.73829 0.96715 1.16442 1.19987 1.84824 1.11382 1.33190 1.67621 0.89993 0.89157 0.89280 0.81119 0.88673 0.89185 0.88796 0.88622 0.76394 0.95271 0.95859 0.92625 0.86496 0.86651 0.86750 0.86493 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.00 0.38 0.02 16 2 C -0.04 -0.35 7.49 -35.31 -0.26 -0.62 16 3 C -0.23 -2.39 11.05 -39.38 -0.44 -2.83 16 4 C 0.03 0.34 6.59 -82.10 -0.54 -0.20 16 5 C -0.02 -0.32 5.10 -27.88 -0.14 -0.46 16 6 C -0.14 -1.89 5.67 -27.89 -0.16 -2.05 16 7 C 0.52 9.00 7.79 -10.99 -0.09 8.91 16 8 O -0.55 -11.27 15.64 5.56 0.09 -11.18 16 9 N -0.70 -12.48 4.04 -54.93 -0.22 -12.70 16 10 C 0.19 3.84 2.11 -69.08 -0.15 3.69 16 11 H 0.09 2.01 7.44 -51.93 -0.39 1.63 16 12 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 13 C -0.52 -13.91 9.39 -34.44 -0.32 -14.23 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 17 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 C -0.08 -1.37 4.91 -104.63 -0.51 -1.88 16 22 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 23 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.11 -1.80 9.67 -39.59 -0.38 -2.18 16 27 N -0.37 -5.02 12.06 33.42 0.40 -4.61 16 28 O 0.10 1.15 11.20 17.18 0.19 1.34 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.09 1.24 8.10 -51.93 -0.42 0.81 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.40 6.55 8.60 -40.82 -0.35 6.20 16 38 H 0.03 0.66 7.58 -51.93 -0.39 0.27 16 39 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.12 1.76 7.73 -52.49 -0.41 1.35 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.94 8.04 -52.48 -0.42 1.52 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -33.26 385.84 -8.56 -41.82 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.56 Total: 8.29 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -4.38 Total: -19.08 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.95 Total: -43.22 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.28 Total: -9.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.26 -8.56 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935027518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.921 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds