Wall clock time and date at job start Tue Mar 31 2020 15:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35454 * 126.77778 * 2 1 4 4 C 1.41376 * 103.98801 * 180.10100 * 3 2 1 5 5 C 1.50703 * 126.80496 * 179.88937 * 4 3 2 6 6 C 1.52996 * 109.47453 * 124.70698 * 5 4 3 7 7 C 1.50698 * 109.47165 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00283 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99942 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00162 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46620 * 35.00730 * 10 9 7 12 12 C 1.52996 * 109.46928 * 155.00175 * 10 9 7 13 13 C 1.50702 * 109.47159 * 295.00193 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.50695 * 109.47337 * 275.00418 * 10 9 7 22 22 C 1.38233 * 120.00093 * 319.72581 * 21 10 9 23 23 C 1.38241 * 120.00133 * 179.79073 * 22 21 10 24 24 C 1.38229 * 119.99727 * 0.43877 * 23 22 21 25 25 C 1.38236 * 119.99976 * 359.81143 * 24 23 22 26 26 C 1.38231 * 120.00171 * 359.97438 * 25 24 23 27 27 N 1.30174 * 106.39550 * 359.62437 * 4 3 2 28 28 O 1.20929 * 111.60404 * 0.24226 * 27 4 3 29 29 H 1.08995 * 109.47339 * 180.30346 * 1 2 3 30 30 H 1.09000 * 109.47048 * 300.30228 * 1 2 3 31 31 H 1.08998 * 109.47439 * 60.29689 * 1 2 3 32 32 H 1.08003 * 128.00939 * 359.96301 * 3 2 1 33 33 H 1.09002 * 109.46659 * 4.70339 * 5 4 3 34 34 H 1.09002 * 109.46999 * 244.71147 * 5 4 3 35 35 H 1.09002 * 109.46744 * 60.00247 * 6 5 4 36 36 H 1.09003 * 109.46864 * 300.00214 * 6 5 4 37 37 H 0.97001 * 119.99887 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47066 * 175.00396 * 12 10 9 39 39 H 1.08994 * 109.47405 * 55.00227 * 12 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.00198 * 359.97438 * 22 21 10 42 42 H 1.07998 * 119.99639 * 180.27390 * 23 22 21 43 43 H 1.07997 * 119.99947 * 179.83467 * 24 23 22 44 44 H 1.08002 * 120.00040 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0058 6 6 5.7792 0.8507 1.1785 7 6 7.0786 1.6139 1.1754 8 8 7.2971 2.4359 0.3109 9 7 7.9980 1.3830 2.1335 10 6 9.2615 2.1245 2.1302 11 1 9.0863 3.1393 1.7730 12 6 9.8271 2.1745 3.5509 13 6 8.9000 2.9703 4.4330 14 1 7.9974 3.3974 4.0216 15 6 9.2009 3.1480 5.7668 16 7 8.3891 3.8379 6.5379 17 14 10.7618 2.4088 6.4786 18 1 11.8737 3.3852 6.3535 19 1 10.5469 2.0842 7.9117 20 1 11.1056 1.1693 5.7365 21 6 10.2463 1.4351 1.2214 22 6 10.3249 0.0551 1.2073 23 6 11.2252 -0.5775 0.3705 24 6 12.0532 0.1703 -0.4456 25 6 11.9782 1.5505 -0.4277 26 6 11.0749 2.1829 0.4059 27 7 3.4764 -0.7563 0.0046 28 8 2.3094 -1.0736 0.0060 29 1 -0.3634 -1.0276 0.0054 30 1 -0.3633 0.5185 0.8873 31 1 -0.3634 0.5092 -0.8926 32 1 2.0345 2.1271 -0.0005 33 1 4.7162 2.3673 0.0782 34 1 5.4546 1.1046 -0.9360 35 1 5.9841 -0.2166 1.0944 36 1 5.2456 1.0462 2.1087 37 1 7.8234 0.7253 2.8247 38 1 10.8088 2.6480 3.5347 39 1 9.9191 1.1610 3.9413 40 1 8.6010 3.9632 7.4761 41 1 9.6808 -0.5291 1.8479 42 1 11.2834 -1.6558 0.3563 43 1 12.7585 -0.3238 -1.0974 44 1 12.6255 2.1348 -1.0650 45 1 11.0160 3.2612 0.4195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935027518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:01 Heat of formation + Delta-G solvation = 11.832993 kcal Electronic energy + Delta-G solvation = -26861.018989 eV Core-core repulsion = 23038.271813 eV Total energy + Delta-G solvation = -3822.747176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.90834 -41.14735 -39.81094 -37.01333 -36.22153 -34.70238 -34.41089 -33.09369 -32.04090 -31.69302 -30.98600 -28.63785 -27.31433 -25.83558 -24.00301 -23.62160 -23.28188 -21.85205 -21.18662 -20.58717 -19.07691 -18.68246 -18.37215 -17.90459 -17.69417 -17.01281 -16.63021 -16.30104 -16.00311 -15.51093 -15.41928 -14.97891 -14.73979 -14.58706 -14.41888 -14.23905 -14.14142 -13.92902 -13.83184 -13.70844 -13.47526 -13.32692 -13.09353 -13.05372 -12.56764 -12.55090 -12.42200 -11.95519 -11.87764 -11.75831 -11.74794 -11.43291 -11.09993 -10.85262 -10.74489 -10.22524 -10.01838 -9.78075 -9.56362 -8.29234 -6.33788 0.47273 0.53426 0.54110 1.23022 1.36119 1.37551 1.48250 1.68409 2.24553 2.33002 2.34509 2.93681 3.06274 3.18242 3.50416 3.79013 3.89955 4.01196 4.07137 4.07543 4.18412 4.18693 4.30429 4.35253 4.41860 4.54028 4.56358 4.57429 4.71082 4.74979 4.76881 4.83408 4.90781 4.96287 5.00613 5.10578 5.13069 5.16400 5.25872 5.28653 5.52648 5.55623 5.62398 5.63771 5.84854 6.15601 6.24768 6.63921 6.73587 7.29359 7.31485 7.33242 8.86935 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.003257 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.529899 B = 8593.607293 C =10785.077698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.026 4.026 3 C -0.245 4.245 4 C 0.012 3.988 5 C -0.018 4.018 6 C -0.123 4.123 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.204 3.796 11 H 0.058 0.942 12 C -0.005 4.005 13 C -0.520 4.520 14 H 0.033 0.967 15 C 0.012 3.988 16 N -0.946 5.946 17 Si 0.943 3.057 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.130 4.130 27 N -0.393 5.393 28 O 0.087 5.913 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.191 0.809 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.409 0.591 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -11.291 -14.519 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.266 4.266 4 C -0.146 4.146 5 C -0.056 4.056 6 C -0.163 4.163 7 C 0.300 3.700 8 O -0.465 6.465 9 N -0.348 5.348 10 C 0.099 3.901 11 H 0.076 0.924 12 C -0.042 4.042 13 C -0.558 4.558 14 H 0.052 0.948 15 C -0.185 4.185 16 N -0.587 5.587 17 Si 0.767 3.233 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.149 4.149 27 N -0.100 5.100 28 O 0.022 5.978 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.209 0.791 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.244 0.756 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.280 -11.687 -14.930 20.309 hybrid contribution 0.138 0.916 1.185 1.504 sum -7.141 -10.771 -13.745 18.866 Atomic orbital electron populations 1.20581 0.80729 1.05949 1.05702 1.25287 0.98016 0.85134 1.00494 1.22773 0.90472 1.02510 1.10876 1.23694 0.98059 0.90106 1.02716 1.19596 0.88519 0.99011 0.98479 1.21524 0.92318 1.01427 1.01067 1.20987 0.85797 0.82581 0.80659 1.90635 1.80172 1.36881 1.38818 1.45882 1.17189 1.42316 1.29439 1.19554 0.81925 0.93714 0.94875 0.92417 1.19730 0.96081 0.97412 0.91012 1.21196 1.07573 1.32876 0.94114 0.94818 1.25876 0.99962 0.95184 0.97479 1.70054 1.39443 1.42362 1.06797 0.85764 0.79567 0.80297 0.77649 1.19783 1.21064 1.16693 1.20400 0.97407 0.94998 0.97349 1.21101 0.99562 0.93473 0.99823 1.21443 0.95676 1.01051 0.96079 1.21481 0.99695 0.93809 0.99563 1.21395 0.98382 0.95595 0.98727 1.21189 0.96864 1.00030 0.96820 1.73811 0.97828 1.16936 1.21395 1.84777 1.11208 1.34179 1.67651 0.88765 0.87579 0.87300 0.79145 0.88876 0.90091 0.87502 0.88001 0.75563 0.95336 0.94627 0.92517 0.85894 0.83653 0.83198 0.83844 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 71.23 0.74 0.24 16 2 C -0.03 -0.44 7.49 25.04 0.19 -0.25 16 3 C -0.24 -4.86 11.05 22.40 0.25 -4.61 16 4 C 0.01 0.31 6.59 43.58 0.29 0.60 16 5 C -0.02 -0.48 5.10 29.85 0.15 -0.32 16 6 C -0.12 -3.49 5.67 29.85 0.17 -3.32 16 7 C 0.51 18.63 7.79 87.66 0.68 19.31 16 8 O -0.58 -25.12 15.64 -3.03 -0.05 -25.17 16 9 N -0.70 -25.81 4.04 -446.11 -1.80 -27.61 16 10 C 0.20 8.39 2.11 44.24 0.09 8.49 16 11 H 0.06 2.72 7.44 -2.39 -0.02 2.70 16 12 C 0.00 -0.21 3.56 29.85 0.11 -0.11 16 13 C -0.52 -28.76 9.39 25.60 0.24 -28.52 16 14 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 15 C 0.01 0.70 5.47 84.66 0.46 1.17 16 16 N -0.95 -57.96 13.96 21.45 0.30 -57.66 16 17 Si 0.94 43.00 27.47 68.60 1.88 44.89 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 21 C -0.10 -3.60 4.91 -19.87 -0.10 -3.70 16 22 C -0.12 -3.76 9.32 22.27 0.21 -3.55 16 23 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 24 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 25 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 26 C -0.13 -4.36 9.67 22.27 0.22 -4.14 16 27 N -0.39 -10.77 12.06 -49.55 -0.60 -11.37 16 28 O 0.09 2.03 11.20 71.64 0.80 2.83 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 32 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 34 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.41 13.63 8.60 -92.71 -0.80 12.83 16 38 H 0.03 1.30 7.58 -2.38 -0.02 1.28 16 39 H 0.04 1.53 7.19 -2.39 -0.02 1.51 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.12 3.53 7.73 -2.91 -0.02 3.51 16 42 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.11 3.82 8.04 -2.91 -0.02 3.80 16 Total: -1.00 -75.05 385.84 5.05 -70.00 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.14 Total: 31.63 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.37 Total: -27.53 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -2.10 Total: -96.65 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.75 Total: -22.34 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Total: -75.05 5.05 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935027518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.831 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds