Wall clock time and date at job start Tue Mar 31 2020 15:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35446 * 126.77312 * 2 1 4 4 C 1.41385 * 103.98496 * 180.09648 * 3 2 1 5 5 C 1.50702 * 126.80662 * 179.88773 * 4 3 2 6 6 C 1.53003 * 109.46956 * 124.70651 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 H 1.09002 * 109.47048 * 324.99733 * 10 9 7 12 12 C 1.53004 * 109.46824 * 204.99873 * 10 9 7 13 13 C 1.50706 * 109.46826 * 65.00077 * 12 10 9 14 14 H 1.07995 * 120.00354 * 359.97438 * 13 12 10 15 15 C 1.37884 * 119.99591 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99574 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00159 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47641 * 89.99834 * 17 15 13 19 19 H 1.48502 * 109.47165 * 210.00134 * 17 15 13 20 20 H 1.48497 * 109.47014 * 329.99614 * 17 15 13 21 21 C 1.50697 * 109.47312 * 85.00292 * 10 9 7 22 22 C 1.38237 * 120.00056 * 39.72235 * 21 10 9 23 23 C 1.38237 * 119.99543 * 179.81433 * 22 21 10 24 24 C 1.38234 * 120.00431 * 0.39280 * 23 22 21 25 25 C 1.38236 * 119.99792 * 359.86186 * 24 23 22 26 26 C 1.38234 * 119.99918 * 219.99781 * 21 10 9 27 27 N 1.30179 * 106.39336 * 359.62366 * 4 3 2 28 28 O 1.20925 * 111.60215 * 0.24581 * 27 4 3 29 29 H 1.09010 * 109.47236 * 180.29670 * 1 2 3 30 30 H 1.08997 * 109.47395 * 300.30250 * 1 2 3 31 31 H 1.08997 * 109.47187 * 60.30548 * 1 2 3 32 32 H 1.07997 * 128.01423 * 359.95550 * 3 2 1 33 33 H 1.09001 * 109.46645 * 4.71462 * 5 4 3 34 34 H 1.08993 * 109.47357 * 244.71224 * 5 4 3 35 35 H 1.09001 * 109.46782 * 60.00894 * 6 5 4 36 36 H 1.08993 * 109.47555 * 300.00451 * 6 5 4 37 37 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 38 38 H 1.08998 * 109.47231 * 184.99873 * 12 10 9 39 39 H 1.08998 * 109.47079 * 305.00407 * 12 10 9 40 40 H 0.97003 * 120.00071 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.00093 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99715 * 180.22928 * 23 22 21 43 43 H 1.07999 * 120.00027 * 179.83484 * 24 23 22 44 44 H 1.07996 * 119.99867 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99883 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3178 1.0849 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9211 1.3000 -0.0057 6 6 5.7791 0.8507 1.1788 7 6 7.0791 1.6130 1.1750 8 8 7.2998 2.4312 0.3074 9 7 7.9990 1.3812 2.1325 10 6 9.2652 2.1180 2.1254 11 1 9.5785 2.2921 1.0960 12 6 10.3348 1.3007 2.8527 13 6 10.6068 0.0329 2.0847 14 1 10.0703 -0.1698 1.1696 15 6 11.5409 -0.8682 2.5503 16 7 11.7779 -1.9747 1.8804 17 14 12.4684 -0.5178 4.1334 18 1 11.7166 -1.0820 5.2830 19 1 13.8140 -1.1427 4.0674 20 1 12.6124 0.9497 4.3083 21 6 9.0811 3.4400 2.8250 22 6 8.3056 3.5156 3.9669 23 6 8.1399 4.7276 4.6108 24 6 8.7430 5.8654 4.1082 25 6 9.5142 5.7907 2.9634 26 6 9.6830 4.5780 2.3217 27 7 3.4764 -0.7564 0.0048 28 8 2.3095 -1.0736 0.0061 29 1 -0.3634 -1.0277 0.0053 30 1 -0.3634 0.5185 0.8872 31 1 -0.3633 0.5091 -0.8927 32 1 2.0345 2.1271 -0.0007 33 1 4.7162 2.3673 0.0784 34 1 5.4547 1.1046 -0.9357 35 1 5.9840 -0.2166 1.0947 36 1 5.2455 1.0461 2.1089 37 1 7.8225 0.7265 2.8262 38 1 11.2518 1.8853 2.9254 39 1 9.9829 1.0507 3.8536 40 1 12.4353 -2.6085 2.2077 41 1 7.8314 2.6273 4.3574 42 1 7.5371 4.7860 5.5050 43 1 8.6114 6.8128 4.6098 44 1 9.9850 6.6797 2.5705 45 1 10.2855 4.5197 1.4273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935027520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:04 Heat of formation + Delta-G solvation = 31.602472 kcal Electronic energy + Delta-G solvation = -26863.864420 eV Core-core repulsion = 23041.974513 eV Total energy + Delta-G solvation = -3821.889907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.01699 -39.74421 -38.54768 -35.64950 -35.01766 -33.70468 -32.67488 -31.78438 -30.85314 -30.52960 -29.30605 -28.03219 -25.88197 -24.42752 -23.11832 -22.34648 -21.78357 -20.49770 -19.78139 -19.56670 -17.74640 -17.41800 -17.15319 -16.58167 -16.37711 -15.58970 -15.34444 -14.83278 -14.66241 -14.33963 -14.15559 -13.97571 -13.61664 -13.45563 -13.38761 -13.10592 -12.85999 -12.79898 -12.57984 -12.42650 -12.38787 -12.13889 -11.88999 -11.52898 -11.28983 -11.10281 -10.89083 -10.77112 -10.51899 -10.24759 -10.10314 -9.88514 -9.49479 -9.39828 -9.28244 -8.65563 -8.61570 -8.48956 -8.31630 -6.11322 -4.11330 1.33877 1.65964 1.68838 2.12725 2.97751 3.10767 3.24457 3.33713 3.36568 3.65906 4.09682 4.16002 4.32427 4.37636 4.83775 4.91981 5.01860 5.03735 5.11410 5.15725 5.16699 5.19878 5.23493 5.25192 5.35661 5.43169 5.47272 5.61627 5.67366 5.79690 5.81947 5.88758 6.00675 6.05168 6.13507 6.22519 6.29579 6.41337 6.72008 6.74449 6.80815 6.91400 7.04594 7.28594 7.33607 7.64498 8.07790 8.20900 8.43488 8.73478 8.94474 9.49250 11.01458 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.003255 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.970455 B = 8600.828642 C =10815.093309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.232 4.232 4 C 0.025 3.975 5 C -0.024 4.024 6 C -0.136 4.136 7 C 0.515 3.485 8 O -0.551 6.551 9 N -0.701 5.701 10 C 0.194 3.806 11 H 0.092 0.908 12 C -0.013 4.013 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.076 4.076 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.107 4.107 27 N -0.360 5.360 28 O 0.098 5.902 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.402 0.598 38 H 0.033 0.967 39 H 0.018 0.982 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.929 10.026 1.663 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.254 4.254 4 C -0.134 4.134 5 C -0.063 4.063 6 C -0.177 4.177 7 C 0.301 3.699 8 O -0.429 6.429 9 N -0.349 5.349 10 C 0.089 3.911 11 H 0.110 0.890 12 C -0.051 4.051 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.077 4.077 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.126 4.126 27 N -0.064 5.064 28 O 0.032 5.968 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.188 0.812 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.236 0.764 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.782 9.391 1.045 21.025 hybrid contribution 0.212 0.471 1.239 1.342 sum -18.570 9.862 2.284 21.150 Atomic orbital electron populations 1.20316 0.84189 1.04593 1.03964 1.24501 0.96368 0.86417 1.03002 1.22432 0.91405 1.00986 1.10549 1.23675 0.97467 0.89992 1.02278 1.19727 0.88219 0.98626 0.99688 1.21593 0.94082 1.02171 0.99833 1.20399 0.85313 0.82747 0.81448 1.90660 1.79396 1.35785 1.37076 1.45907 1.17191 1.42161 1.29684 1.19962 0.83972 0.86736 1.00385 0.88980 1.19874 0.93481 0.95969 0.95777 1.21016 1.22848 1.01838 1.10227 0.90606 1.24991 0.96417 0.94821 0.96889 1.69905 1.34244 1.10138 1.39241 0.86851 0.79630 0.79120 0.84160 1.20266 1.21297 1.18940 1.20586 0.95849 0.96075 0.95166 1.20931 0.98981 0.97500 0.95411 1.21053 1.00415 0.93020 0.99843 1.21018 0.99008 0.98094 0.97076 1.21066 0.99354 0.97522 0.96095 1.21049 0.99636 0.92050 0.99841 1.73888 0.96579 1.16423 1.19532 1.84849 1.11385 1.33151 1.67452 0.89951 0.89272 0.89297 0.81241 0.88926 0.88936 0.88208 0.89217 0.76395 0.94843 0.96340 0.92613 0.86506 0.86675 0.86757 0.86492 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.01 0.38 0.04 16 2 C -0.04 -0.36 7.49 -35.31 -0.26 -0.62 16 3 C -0.23 -2.30 11.05 -39.38 -0.44 -2.74 16 4 C 0.02 0.31 6.59 -82.10 -0.54 -0.23 16 5 C -0.02 -0.32 5.10 -27.88 -0.14 -0.46 16 6 C -0.14 -1.89 5.67 -27.88 -0.16 -2.05 16 7 C 0.51 8.99 7.79 -10.98 -0.09 8.91 16 8 O -0.55 -11.27 15.64 5.56 0.09 -11.18 16 9 N -0.70 -12.47 4.02 -54.93 -0.22 -12.69 16 10 C 0.19 3.83 2.12 -69.08 -0.15 3.69 16 11 H 0.09 2.03 7.44 -51.93 -0.39 1.64 16 12 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 13 C -0.52 -14.08 9.39 -34.43 -0.32 -14.40 16 14 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 17 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 21 C -0.08 -1.33 4.91 -104.63 -0.51 -1.85 16 22 C -0.11 -1.73 9.33 -39.58 -0.37 -2.10 16 23 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 26 C -0.11 -1.77 9.67 -39.58 -0.38 -2.16 16 27 N -0.36 -5.14 12.06 33.43 0.40 -4.74 16 28 O 0.10 1.21 11.20 17.19 0.19 1.40 16 29 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.40 6.54 8.60 -40.82 -0.35 6.19 16 38 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 39 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.12 1.69 7.71 -52.49 -0.40 1.29 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 43 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.94 8.04 -52.49 -0.42 1.51 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -33.75 385.81 -8.56 -42.31 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.56 Total: 7.90 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -4.38 Total: -18.91 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.96 Total: -43.66 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.28 Total: -9.78 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.75 -8.56 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935027520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.908 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds