Wall clock time and date at job start Tue Mar 31 2020 15:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35446 * 126.77312 * 2 1 4 4 C 1.41385 * 103.98496 * 180.09648 * 3 2 1 5 5 C 1.50702 * 126.80662 * 179.88773 * 4 3 2 6 6 C 1.53003 * 109.46956 * 124.70651 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 11 11 H 1.09002 * 109.47048 * 324.99733 * 10 9 7 12 12 C 1.53004 * 109.46824 * 204.99873 * 10 9 7 13 13 C 1.50706 * 109.46826 * 65.00077 * 12 10 9 14 14 H 1.07995 * 120.00354 * 359.97438 * 13 12 10 15 15 C 1.37884 * 119.99591 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99574 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00159 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47641 * 89.99834 * 17 15 13 19 19 H 1.48502 * 109.47165 * 210.00134 * 17 15 13 20 20 H 1.48497 * 109.47014 * 329.99614 * 17 15 13 21 21 C 1.50697 * 109.47312 * 85.00292 * 10 9 7 22 22 C 1.38237 * 120.00056 * 39.72235 * 21 10 9 23 23 C 1.38237 * 119.99543 * 179.81433 * 22 21 10 24 24 C 1.38234 * 120.00431 * 0.39280 * 23 22 21 25 25 C 1.38236 * 119.99792 * 359.86186 * 24 23 22 26 26 C 1.38234 * 119.99918 * 219.99781 * 21 10 9 27 27 N 1.30179 * 106.39336 * 359.62366 * 4 3 2 28 28 O 1.20925 * 111.60215 * 0.24581 * 27 4 3 29 29 H 1.09010 * 109.47236 * 180.29670 * 1 2 3 30 30 H 1.08997 * 109.47395 * 300.30250 * 1 2 3 31 31 H 1.08997 * 109.47187 * 60.30548 * 1 2 3 32 32 H 1.07997 * 128.01423 * 359.95550 * 3 2 1 33 33 H 1.09001 * 109.46645 * 4.71462 * 5 4 3 34 34 H 1.08993 * 109.47357 * 244.71224 * 5 4 3 35 35 H 1.09001 * 109.46782 * 60.00894 * 6 5 4 36 36 H 1.08993 * 109.47555 * 300.00451 * 6 5 4 37 37 H 0.97005 * 119.99846 * 359.72750 * 9 7 6 38 38 H 1.08998 * 109.47231 * 184.99873 * 12 10 9 39 39 H 1.08998 * 109.47079 * 305.00407 * 12 10 9 40 40 H 0.97003 * 120.00071 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.00093 * 359.97438 * 22 21 10 42 42 H 1.08004 * 119.99715 * 180.22928 * 23 22 21 43 43 H 1.07999 * 120.00027 * 179.83484 * 24 23 22 44 44 H 1.07996 * 119.99867 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99883 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3178 1.0849 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9211 1.3000 -0.0057 6 6 5.7791 0.8507 1.1788 7 6 7.0791 1.6130 1.1750 8 8 7.2998 2.4312 0.3074 9 7 7.9990 1.3812 2.1325 10 6 9.2652 2.1180 2.1254 11 1 9.5785 2.2921 1.0960 12 6 10.3348 1.3007 2.8527 13 6 10.6068 0.0329 2.0847 14 1 10.0703 -0.1698 1.1696 15 6 11.5409 -0.8682 2.5503 16 7 11.7779 -1.9747 1.8804 17 14 12.4684 -0.5178 4.1334 18 1 11.7166 -1.0820 5.2830 19 1 13.8140 -1.1427 4.0674 20 1 12.6124 0.9497 4.3083 21 6 9.0811 3.4400 2.8250 22 6 8.3056 3.5156 3.9669 23 6 8.1399 4.7276 4.6108 24 6 8.7430 5.8654 4.1082 25 6 9.5142 5.7907 2.9634 26 6 9.6830 4.5780 2.3217 27 7 3.4764 -0.7564 0.0048 28 8 2.3095 -1.0736 0.0061 29 1 -0.3634 -1.0277 0.0053 30 1 -0.3634 0.5185 0.8872 31 1 -0.3633 0.5091 -0.8927 32 1 2.0345 2.1271 -0.0007 33 1 4.7162 2.3673 0.0784 34 1 5.4547 1.1046 -0.9357 35 1 5.9840 -0.2166 1.0947 36 1 5.2455 1.0461 2.1089 37 1 7.8225 0.7265 2.8262 38 1 11.2518 1.8853 2.9254 39 1 9.9829 1.0507 3.8536 40 1 12.4353 -2.6085 2.2077 41 1 7.8314 2.6273 4.3574 42 1 7.5371 4.7860 5.5050 43 1 8.6114 6.8128 4.6098 44 1 9.9850 6.6797 2.5705 45 1 10.2855 4.5197 1.4273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935027520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:04 Heat of formation + Delta-G solvation = 11.518038 kcal Electronic energy + Delta-G solvation = -26864.735346 eV Core-core repulsion = 23041.974513 eV Total energy + Delta-G solvation = -3822.760833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.91582 -41.14573 -39.80015 -37.01224 -36.21946 -34.71440 -34.40396 -33.09280 -32.03745 -31.67755 -30.98784 -28.63322 -27.31583 -25.83712 -24.00288 -23.60906 -23.27476 -21.85266 -21.18439 -20.58981 -19.08622 -18.69143 -18.37273 -17.87834 -17.70133 -17.03000 -16.61397 -16.29092 -15.99669 -15.52951 -15.42265 -14.92294 -14.79205 -14.53959 -14.44195 -14.18954 -14.07371 -13.99693 -13.90879 -13.67324 -13.49444 -13.31861 -13.08354 -13.04129 -12.54932 -12.49020 -12.36008 -11.97613 -11.86188 -11.80872 -11.73911 -11.46554 -11.09239 -10.84566 -10.75676 -10.22505 -10.01696 -9.76385 -9.54990 -8.30203 -6.35459 0.48826 0.55163 0.55971 1.24378 1.34343 1.37589 1.48510 1.67695 2.25855 2.33558 2.34724 2.95194 3.05248 3.20311 3.50831 3.78693 3.91454 4.02162 4.06701 4.08432 4.19031 4.20376 4.32189 4.35257 4.43429 4.51736 4.57196 4.58438 4.72324 4.76144 4.78193 4.83758 4.91423 4.97931 5.01669 5.11052 5.13804 5.17341 5.25051 5.30410 5.53141 5.55949 5.64155 5.64495 5.86016 6.17312 6.23337 6.63652 6.72538 7.28275 7.31134 7.36352 8.86316 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.003255 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.970455 B = 8600.828642 C =10815.093309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.029 4.029 3 C -0.238 4.238 4 C 0.010 3.990 5 C -0.018 4.018 6 C -0.123 4.123 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.204 3.796 11 H 0.054 0.946 12 C -0.004 4.004 13 C -0.521 4.521 14 H 0.030 0.970 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.947 3.053 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.249 1.249 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.132 4.132 27 N -0.400 5.400 28 O 0.086 5.914 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.197 0.803 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.409 0.591 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.098 12.518 4.614 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.259 4.259 4 C -0.148 4.148 5 C -0.056 4.056 6 C -0.163 4.163 7 C 0.300 3.700 8 O -0.465 6.465 9 N -0.348 5.348 10 C 0.099 3.901 11 H 0.073 0.927 12 C -0.042 4.042 13 C -0.559 4.559 14 H 0.048 0.952 15 C -0.187 4.187 16 N -0.589 5.589 17 Si 0.771 3.229 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.173 1.173 21 C -0.101 4.101 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.150 4.150 27 N -0.106 5.106 28 O 0.020 5.980 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.214 0.786 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.245 0.755 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.977 11.885 4.007 24.441 hybrid contribution 0.793 -0.267 0.224 0.867 sum -20.184 11.619 4.231 23.670 Atomic orbital electron populations 1.20585 0.80659 1.05848 1.05808 1.25359 0.98093 0.85216 1.00597 1.22756 0.89951 1.02537 1.10666 1.23734 0.98212 0.89958 1.02848 1.19607 0.88425 0.99387 0.98202 1.21527 0.92372 1.00763 1.01675 1.20999 0.86165 0.82373 0.80505 1.90635 1.80234 1.37465 1.38199 1.45886 1.16660 1.42192 1.30089 1.19553 0.84056 0.88224 0.98277 0.92736 1.19725 0.94430 0.93970 0.96031 1.21210 1.22044 1.03719 1.08961 0.95201 1.25934 0.97531 0.94404 1.00863 1.70070 1.35529 1.11616 1.41651 0.85705 0.77901 0.79779 0.79555 1.18588 1.21387 1.17259 1.20368 0.98292 0.94837 0.96581 1.21101 0.98739 0.99047 0.94912 1.21448 1.00025 0.92135 1.00422 1.21486 0.97253 0.99504 0.96229 1.21384 0.99249 0.97227 0.96254 1.21175 1.00374 0.93165 1.00308 1.73885 0.97898 1.17437 1.21406 1.84796 1.11171 1.34396 1.67598 0.89062 0.87199 0.87351 0.78553 0.87820 0.91172 0.89114 0.86392 0.75549 0.95165 0.94640 0.92508 0.85698 0.83430 0.83140 0.83959 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 71.24 0.74 0.31 16 2 C -0.03 -0.48 7.49 25.04 0.19 -0.29 16 3 C -0.24 -4.33 11.05 22.40 0.25 -4.09 16 4 C 0.01 0.26 6.59 43.58 0.29 0.55 16 5 C -0.02 -0.48 5.10 29.85 0.15 -0.33 16 6 C -0.12 -3.51 5.67 29.85 0.17 -3.34 16 7 C 0.51 18.68 7.79 87.65 0.68 19.37 16 8 O -0.58 -25.25 15.64 -3.04 -0.05 -25.29 16 9 N -0.70 -25.87 4.02 -446.09 -1.79 -27.67 16 10 C 0.20 8.42 2.12 44.25 0.09 8.51 16 11 H 0.05 2.61 7.44 -2.39 -0.02 2.60 16 12 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 13 C -0.52 -29.42 9.39 25.60 0.24 -29.18 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 15 C 0.01 0.57 5.47 84.66 0.46 1.03 16 16 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 17 Si 0.95 43.46 27.47 68.60 1.88 45.34 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 21 C -0.10 -3.52 4.91 -19.87 -0.10 -3.61 16 22 C -0.12 -3.54 9.33 22.27 0.21 -3.33 16 23 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 24 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 25 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 26 C -0.13 -4.35 9.67 22.27 0.22 -4.14 16 27 N -0.40 -11.68 12.06 -49.54 -0.60 -12.28 16 28 O 0.09 2.09 11.20 71.68 0.80 2.89 16 29 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 34 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.41 13.64 8.60 -92.70 -0.80 12.84 16 38 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 39 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.13 3.37 7.71 -2.91 -0.02 3.35 16 42 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.11 3.75 8.04 -2.91 -0.02 3.72 16 Total: -1.00 -78.05 385.81 5.06 -72.99 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.14 Total: 29.96 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.37 Total: -26.92 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -2.09 Total: -98.96 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.75 Total: -22.41 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -78.05 5.06 -72.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935027520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.504 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds