Wall clock time and date at job start Tue Mar 31 2020 14:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37977 * 119.87936 * 2 1 4 4 C 1.38246 * 120.35259 * 180.02562 * 3 2 1 5 5 C 1.38393 * 119.76744 * 359.83202 * 4 3 2 6 6 C 1.37698 * 119.97662 * 359.97438 * 5 4 3 7 7 C 1.38923 * 120.78672 * 0.34276 * 6 5 4 8 8 O 1.36135 * 111.22799 * 178.95041 * 7 6 5 9 9 C 1.43773 * 109.24371 * 19.01180 * 8 7 6 10 10 H 1.08993 * 110.90527 * 213.86167 * 9 8 7 11 11 C 1.50700 * 110.74691 * 90.58318 * 9 8 7 12 12 O 1.21281 * 119.99745 * 1.63002 * 11 9 8 13 13 N 1.34775 * 120.00274 * 181.62964 * 11 9 8 14 14 C 1.46497 * 120.00149 * 180.02562 * 13 11 9 15 15 H 1.09005 * 115.49538 * 9.61619 * 14 13 11 16 16 C 1.57118 * 118.27339 * 223.46197 * 14 13 11 17 17 H 1.09000 * 121.24099 * 3.77349 * 16 14 13 18 18 C 1.54389 * 118.20103 * 162.01441 * 16 14 13 19 19 N 1.48143 * 104.61766 * 86.20035 * 18 16 14 20 20 C 1.36940 * 127.84087 * 140.41061 * 19 18 16 21 21 H 1.07991 * 120.00525 * 195.61734 * 20 19 18 22 22 C 1.38817 * 119.99645 * 15.61941 * 20 19 18 23 23 N 1.31614 * 120.00197 * 9.10299 * 22 20 19 24 24 Si 1.86804 * 119.99863 * 189.11275 * 22 20 19 25 25 H 1.48500 * 109.47330 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47314 * 119.99848 * 24 22 20 27 27 H 1.48501 * 109.46496 * 239.99717 * 24 22 20 28 28 C 1.48142 * 104.32397 * 320.41327 * 19 18 16 29 29 C 1.52999 * 117.44418 * 154.99909 * 14 13 11 30 30 H 1.08996 * 119.53548 * 355.87957 * 29 14 13 31 31 C 1.51646 * 132.17801 * 180.36293 * 6 5 4 32 32 H 1.09001 * 109.47300 * 90.00668 * 1 2 3 33 33 H 1.09003 * 109.46826 * 210.00473 * 1 2 3 34 34 H 1.09002 * 109.47276 * 329.99867 * 1 2 3 35 35 H 1.07996 * 119.82554 * 359.97438 * 3 2 1 36 36 H 1.07994 * 120.11821 * 179.85133 * 4 3 2 37 37 H 1.07994 * 120.01287 * 179.97438 * 5 4 3 38 38 H 0.96998 * 119.99867 * 359.97438 * 13 11 9 39 39 H 1.09004 * 110.40988 * 327.41485 * 18 16 14 40 40 H 1.09001 * 110.50556 * 205.03262 * 18 16 14 41 41 H 0.96999 * 120.00326 * 179.97438 * 23 22 20 42 42 H 1.08997 * 110.40651 * 280.79640 * 28 19 18 43 43 H 1.08999 * 110.40877 * 158.37029 * 28 19 18 44 44 H 1.09002 * 110.93526 * 46.44023 * 31 6 5 45 45 H 1.09001 * 110.93837 * 282.75463 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 -0.0005 5 6 4.2737 0.0122 0.0025 6 6 3.5898 -1.1829 0.0065 7 6 2.2008 -1.2073 0.0004 8 8 1.7303 -2.4846 -0.0173 9 6 2.7689 -3.3783 0.4181 10 1 2.7028 -4.3340 -0.1016 11 6 2.7094 -3.5791 1.9104 12 8 1.8404 -3.0383 2.5609 13 7 3.6220 -4.3597 2.5223 14 6 3.5638 -4.5554 3.9730 15 1 2.6672 -4.1748 4.4622 16 6 4.9063 -4.4923 4.7869 17 1 5.8510 -4.2481 4.3011 18 6 4.8246 -4.2738 6.3130 19 7 4.6555 -5.6332 6.8768 20 6 5.2233 -6.1488 8.0113 21 1 5.2236 -7.2158 8.1781 22 6 5.7985 -5.2999 8.9470 23 7 5.6433 -3.9976 8.8372 24 14 6.7932 -6.0060 10.3618 25 1 6.8167 -7.4873 10.2596 26 1 8.1816 -5.4830 10.3003 27 1 6.1713 -5.6090 11.6505 28 6 3.7328 -6.3085 5.9349 29 6 4.1863 -5.8339 4.5376 30 1 4.5873 -6.5831 3.8550 31 6 4.0594 -2.6248 0.0175 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5139 35 1 1.6495 2.1288 -0.0004 36 1 4.1109 2.1464 -0.0030 37 1 5.3537 0.0165 0.0016 38 1 4.3168 -4.7926 2.0020 39 1 3.9665 -3.6495 6.5623 40 1 5.7440 -3.8203 6.6836 41 1 6.0449 -3.4044 9.4912 42 1 2.7042 -6.0020 6.1251 43 1 3.8293 -7.3910 6.0185 44 1 4.8435 -2.7734 0.7599 45 1 4.3984 -2.9316 -0.9720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963177871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:27 Heat of formation + Delta-G solvation = 24.746671 kcal Electronic energy + Delta-G solvation = -27295.716011 eV Core-core repulsion = 23473.528814 eV Total energy + Delta-G solvation = -3822.187197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72715 -39.52165 -38.30394 -37.40638 -34.59366 -33.80513 -32.71812 -31.32099 -30.44764 -29.54446 -27.18033 -26.95197 -25.82555 -24.62319 -22.48726 -21.85463 -21.13842 -20.61768 -20.28122 -19.25187 -18.00613 -17.22401 -17.06086 -16.84081 -16.05050 -15.71898 -15.37960 -14.75177 -14.62870 -14.29102 -13.85553 -13.75639 -13.63511 -13.37380 -13.27382 -13.14343 -12.77946 -12.61490 -12.42969 -12.26316 -12.04997 -11.68689 -11.66063 -11.56467 -11.45175 -11.03579 -10.99899 -10.86557 -10.43063 -10.24123 -10.16535 -9.87723 -9.75885 -9.25025 -8.88604 -8.77840 -8.33205 -8.26461 -6.89306 -5.81763 -3.16483 1.07286 1.17168 2.39528 2.68999 3.15926 3.36424 3.42288 3.44938 3.50883 4.04413 4.14211 4.23173 4.40176 4.47285 4.57139 4.75464 4.86163 4.97754 5.03707 5.09925 5.19140 5.28539 5.32600 5.34146 5.36701 5.48028 5.52688 5.54087 5.69692 5.78854 5.85403 6.04257 6.07890 6.13975 6.20914 6.21335 6.30034 6.37787 6.48151 6.65337 6.72215 6.85466 6.95568 7.33784 7.43439 7.52121 7.69745 8.12841 8.17983 9.08498 9.71255 10.47989 11.32496 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002449 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.290345 B =11429.735824 C =11910.164803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.088 4.088 4 C -0.144 4.144 5 C -0.074 4.074 6 C -0.172 4.172 7 C 0.111 3.889 8 O -0.271 6.271 9 C 0.064 3.936 10 H 0.143 0.857 11 C 0.498 3.502 12 O -0.514 6.514 13 N -0.691 5.691 14 C 0.093 3.907 15 H 0.133 0.867 16 C -0.179 4.179 17 H 0.104 0.896 18 C 0.184 3.816 19 N -0.593 5.593 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.154 3.846 29 C -0.177 4.177 30 H 0.102 0.898 31 C -0.099 4.099 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.399 0.601 39 H 0.025 0.975 40 H 0.092 0.908 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 5.986 -23.410 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.106 4.106 4 C -0.162 4.162 5 C -0.092 4.092 6 C -0.173 4.173 7 C 0.065 3.935 8 O -0.184 6.184 9 C 0.004 3.996 10 H 0.160 0.840 11 C 0.282 3.718 12 O -0.389 6.389 13 N -0.341 5.341 14 C -0.013 4.013 15 H 0.150 0.850 16 C -0.201 4.201 17 H 0.122 0.878 18 C 0.058 3.942 19 N -0.316 5.316 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.560 5.560 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.027 3.973 29 C -0.199 4.199 30 H 0.120 0.880 31 C -0.137 4.137 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.233 0.767 39 H 0.043 0.957 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.273 6.344 -22.740 23.991 hybrid contribution 1.190 -0.662 0.482 1.445 sum -3.082 5.682 -22.258 23.178 Atomic orbital electron populations 1.20698 0.90561 1.03312 1.02113 1.19150 0.96536 0.89484 1.04605 1.20804 0.94253 0.96561 0.99015 1.21017 0.94118 0.97772 1.03303 1.20269 0.99824 0.90486 0.98610 1.20670 0.93650 0.95214 1.07748 1.19342 0.91699 0.85365 0.97047 1.86920 1.37847 1.13403 1.80182 1.23316 0.87243 0.96060 0.92952 0.83995 1.20771 0.82060 0.79281 0.89650 1.90761 1.35089 1.46990 1.66015 1.45246 1.31437 1.49514 1.07937 1.22499 0.98671 1.01569 0.78541 0.84968 1.25390 0.94255 1.01139 0.99300 0.87842 1.21075 1.01746 0.87535 0.83875 1.45189 1.50860 1.10440 1.25135 1.19033 1.30477 0.91591 0.94509 0.90452 1.24919 1.01709 0.95545 0.98101 1.69906 1.47508 1.01525 1.37035 0.86037 0.79629 0.78146 0.81871 1.20356 1.21609 1.21640 1.21145 0.93268 0.96395 0.86496 1.24316 1.04649 0.91230 0.99675 0.87978 1.21783 0.96893 0.90933 1.04051 0.91424 0.90985 0.91428 0.85159 0.85384 0.85698 0.76733 0.95657 0.89027 0.93539 0.95502 0.92935 0.88348 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.98 36.00 0.36 -0.77 16 2 C -0.10 -1.16 5.90 -104.35 -0.62 -1.78 16 3 C -0.09 -0.89 9.66 -39.67 -0.38 -1.27 16 4 C -0.14 -1.38 10.07 -39.52 -0.40 -1.77 16 5 C -0.07 -0.75 10.03 -39.72 -0.40 -1.15 16 6 C -0.17 -1.96 6.26 -104.10 -0.65 -2.61 16 7 C 0.11 1.45 6.60 -38.95 -0.26 1.19 16 8 O -0.27 -3.62 10.29 -39.23 -0.40 -4.02 16 9 C 0.06 0.67 4.11 -26.98 -0.11 0.56 16 10 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 11 C 0.50 7.06 7.07 -10.99 -0.08 6.99 16 12 O -0.51 -9.87 16.09 -13.51 -0.22 -10.09 16 13 N -0.69 -8.81 5.44 -51.65 -0.28 -9.09 16 14 C 0.09 1.55 6.16 -65.70 -0.40 1.14 16 15 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 16 C -0.18 -3.35 7.27 -86.98 -0.63 -3.99 16 17 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 18 C 0.18 4.44 5.73 -2.41 -0.01 4.43 16 19 N -0.59 -15.15 3.38 -168.87 -0.57 -15.72 16 20 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 21 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 22 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 23 N -0.91 -26.80 10.86 55.49 0.60 -26.20 16 24 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.15 3.21 7.03 -2.41 -0.02 3.19 16 29 C -0.18 -3.05 6.91 -89.22 -0.62 -3.66 16 30 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 31 C -0.10 -0.86 6.64 -26.52 -0.18 -1.03 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 34 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.40 3.63 8.83 -40.82 -0.36 3.26 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.78 7.78 -51.93 -0.40 0.38 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -34.70 374.19 -11.42 -46.12 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.52 Total: 3.82 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -4.64 Total: -7.27 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.25 Total: -51.01 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.62 Total: -14.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.70 -11.42 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963177871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.871 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds