Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37977 * 119.87936 * 2 1 4 4 C 1.38246 * 120.35259 * 180.02562 * 3 2 1 5 5 C 1.38393 * 119.76744 * 359.83202 * 4 3 2 6 6 C 1.37698 * 119.97662 * 359.97438 * 5 4 3 7 7 C 1.38923 * 120.78672 * 0.34276 * 6 5 4 8 8 O 1.36135 * 111.22799 * 178.95041 * 7 6 5 9 9 C 1.43773 * 109.24371 * 19.01180 * 8 7 6 10 10 H 1.08993 * 110.90527 * 213.86167 * 9 8 7 11 11 C 1.50700 * 110.74691 * 90.58318 * 9 8 7 12 12 O 1.21281 * 119.99745 * 1.63002 * 11 9 8 13 13 N 1.34775 * 120.00274 * 181.62964 * 11 9 8 14 14 C 1.46497 * 120.00149 * 180.02562 * 13 11 9 15 15 H 1.09005 * 115.49538 * 9.61619 * 14 13 11 16 16 C 1.57118 * 118.27339 * 223.46197 * 14 13 11 17 17 H 1.09000 * 121.24099 * 3.77349 * 16 14 13 18 18 C 1.54389 * 118.20103 * 162.01441 * 16 14 13 19 19 N 1.48143 * 104.61766 * 86.20035 * 18 16 14 20 20 C 1.36940 * 127.84087 * 140.41061 * 19 18 16 21 21 H 1.07991 * 120.00525 * 195.61734 * 20 19 18 22 22 C 1.38817 * 119.99645 * 15.61941 * 20 19 18 23 23 N 1.31614 * 120.00197 * 9.10299 * 22 20 19 24 24 Si 1.86804 * 119.99863 * 189.11275 * 22 20 19 25 25 H 1.48500 * 109.47330 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47314 * 119.99848 * 24 22 20 27 27 H 1.48501 * 109.46496 * 239.99717 * 24 22 20 28 28 C 1.48142 * 104.32397 * 320.41327 * 19 18 16 29 29 C 1.52999 * 117.44418 * 154.99909 * 14 13 11 30 30 H 1.08996 * 119.53548 * 355.87957 * 29 14 13 31 31 C 1.51646 * 132.17801 * 180.36293 * 6 5 4 32 32 H 1.09001 * 109.47300 * 90.00668 * 1 2 3 33 33 H 1.09003 * 109.46826 * 210.00473 * 1 2 3 34 34 H 1.09002 * 109.47276 * 329.99867 * 1 2 3 35 35 H 1.07996 * 119.82554 * 359.97438 * 3 2 1 36 36 H 1.07994 * 120.11821 * 179.85133 * 4 3 2 37 37 H 1.07994 * 120.01287 * 179.97438 * 5 4 3 38 38 H 0.96998 * 119.99867 * 359.97438 * 13 11 9 39 39 H 1.09004 * 110.40988 * 327.41485 * 18 16 14 40 40 H 1.09001 * 110.50556 * 205.03262 * 18 16 14 41 41 H 0.96999 * 120.00326 * 179.97438 * 23 22 20 42 42 H 1.08997 * 110.40651 * 280.79640 * 28 19 18 43 43 H 1.08999 * 110.40877 * 158.37029 * 28 19 18 44 44 H 1.09002 * 110.93526 * 46.44023 * 31 6 5 45 45 H 1.09001 * 110.93837 * 282.75463 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 -0.0005 5 6 4.2737 0.0122 0.0025 6 6 3.5898 -1.1829 0.0065 7 6 2.2008 -1.2073 0.0004 8 8 1.7303 -2.4846 -0.0173 9 6 2.7689 -3.3783 0.4181 10 1 2.7028 -4.3340 -0.1016 11 6 2.7094 -3.5791 1.9104 12 8 1.8404 -3.0383 2.5609 13 7 3.6220 -4.3597 2.5223 14 6 3.5638 -4.5554 3.9730 15 1 2.6672 -4.1748 4.4622 16 6 4.9063 -4.4923 4.7869 17 1 5.8510 -4.2481 4.3011 18 6 4.8246 -4.2738 6.3130 19 7 4.6555 -5.6332 6.8768 20 6 5.2233 -6.1488 8.0113 21 1 5.2236 -7.2158 8.1781 22 6 5.7985 -5.2999 8.9470 23 7 5.6433 -3.9976 8.8372 24 14 6.7932 -6.0060 10.3618 25 1 6.8167 -7.4873 10.2596 26 1 8.1816 -5.4830 10.3003 27 1 6.1713 -5.6090 11.6505 28 6 3.7328 -6.3085 5.9349 29 6 4.1863 -5.8339 4.5376 30 1 4.5873 -6.5831 3.8550 31 6 4.0594 -2.6248 0.0175 32 1 -0.3634 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5139 35 1 1.6495 2.1288 -0.0004 36 1 4.1109 2.1464 -0.0030 37 1 5.3537 0.0165 0.0016 38 1 4.3168 -4.7926 2.0020 39 1 3.9665 -3.6495 6.5623 40 1 5.7440 -3.8203 6.6836 41 1 6.0449 -3.4044 9.4912 42 1 2.7042 -6.0020 6.1251 43 1 3.8293 -7.3910 6.0185 44 1 4.8435 -2.7734 0.7599 45 1 4.3984 -2.9316 -0.9720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963177871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = 3.209239 kcal Electronic energy + Delta-G solvation = -27296.649944 eV Core-core repulsion = 23473.528814 eV Total energy + Delta-G solvation = -3823.121130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57590 -40.78962 -39.66944 -38.32873 -36.11592 -34.79812 -34.22116 -32.41870 -31.83389 -30.53990 -28.95042 -27.72862 -27.64080 -25.66067 -23.63121 -23.06992 -22.05403 -21.88551 -21.62844 -20.82692 -19.05351 -18.84592 -18.11497 -17.95462 -17.21853 -16.76611 -16.50864 -16.37860 -15.73428 -15.59966 -15.14078 -14.96849 -14.66392 -14.61094 -14.50309 -14.09011 -13.90904 -13.80983 -13.45785 -13.37043 -13.23313 -13.20041 -12.91408 -12.76428 -12.71181 -12.48315 -12.40593 -12.12486 -12.01856 -11.90317 -11.76262 -11.69047 -11.05518 -10.84341 -10.75574 -9.72639 -9.63304 -9.09603 -8.94782 -7.93407 -5.30960 0.30816 0.36915 1.30799 1.46346 1.46932 1.58404 1.67774 2.26413 2.47207 2.73432 2.75660 3.25141 3.33951 3.38501 3.49769 3.60766 3.78121 3.85074 3.90913 4.04686 4.09421 4.19797 4.28446 4.36689 4.38195 4.50506 4.52080 4.65176 4.70646 4.74698 4.75659 4.78654 4.86155 4.96449 4.97084 5.24799 5.25583 5.37117 5.39158 5.42717 5.45066 5.50185 5.54075 5.62318 5.63029 6.14290 6.16310 6.41201 6.97873 7.09066 7.65189 8.43403 9.20632 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.002449 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.290345 B =11429.735824 C =11910.164803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.085 4.085 6 C -0.186 4.186 7 C 0.074 3.926 8 O -0.293 6.293 9 C 0.067 3.933 10 H 0.187 0.813 11 C 0.495 3.505 12 O -0.574 6.574 13 N -0.670 5.670 14 C 0.112 3.888 15 H 0.099 0.901 16 C -0.184 4.184 17 H 0.128 0.872 18 C 0.187 3.813 19 N -0.617 5.617 20 C -0.240 4.240 21 H 0.085 0.915 22 C -0.065 4.065 23 N -0.949 5.949 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.289 1.289 27 H -0.294 1.294 28 C 0.144 3.856 29 C -0.150 4.150 30 H 0.145 0.855 31 C -0.090 4.090 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.423 0.577 39 H -0.012 1.012 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.015 0.985 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 4.785 -25.934 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.164 4.164 5 C -0.103 4.103 6 C -0.187 4.187 7 C 0.029 3.971 8 O -0.206 6.206 9 C 0.008 3.992 10 H 0.204 0.796 11 C 0.282 3.718 12 O -0.452 6.452 13 N -0.322 5.322 14 C 0.005 3.995 15 H 0.117 0.883 16 C -0.205 4.205 17 H 0.146 0.854 18 C 0.061 3.939 19 N -0.341 5.341 20 C -0.369 4.369 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.186 1.186 26 H -0.216 1.216 27 H -0.221 1.221 28 C 0.019 3.981 29 C -0.171 4.171 30 H 0.163 0.837 31 C -0.127 4.127 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.262 0.738 39 H 0.006 0.994 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.521 5.100 -25.326 25.957 hybrid contribution 0.552 -0.226 1.271 1.404 sum -1.970 4.874 -24.055 24.623 Atomic orbital electron populations 1.20676 0.90186 1.02667 1.02799 1.19555 0.97355 0.90226 1.05271 1.21137 0.94912 0.96817 0.98581 1.21436 0.94120 0.98905 1.01947 1.20659 1.01130 0.90331 0.98186 1.21118 0.93215 0.97090 1.07293 1.19728 0.92950 0.85558 0.98864 1.86888 1.39420 1.14004 1.80307 1.23627 0.87877 0.97845 0.89860 0.79592 1.21662 0.80869 0.77888 0.91391 1.90746 1.37521 1.49249 1.67674 1.44979 1.31921 1.49244 1.06031 1.21975 0.96122 1.00796 0.80619 0.88284 1.25059 0.96404 1.03094 0.95986 0.85409 1.20784 0.98431 0.86771 0.87885 1.45499 1.51889 1.11081 1.25590 1.19456 1.29981 0.92120 0.95310 0.89687 1.25808 1.03202 0.95871 1.00949 1.70118 1.48812 1.02854 1.37936 0.84954 0.77616 0.78226 0.78143 1.18590 1.21581 1.22113 1.21316 0.91968 0.97085 0.87763 1.24219 1.03188 0.91415 0.98253 0.83720 1.21902 0.95784 0.88732 1.06259 0.90065 0.93463 0.90116 0.82974 0.82814 0.83424 0.73840 0.99396 0.92314 0.94129 0.96672 0.91336 0.87327 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.98 71.23 0.71 -1.54 16 2 C -0.12 -2.97 5.90 -19.69 -0.12 -3.09 16 3 C -0.10 -1.86 9.66 22.21 0.21 -1.64 16 4 C -0.15 -2.54 10.07 22.31 0.22 -2.31 16 5 C -0.09 -1.56 10.03 22.18 0.22 -1.34 16 6 C -0.19 -3.93 6.26 -19.53 -0.12 -4.05 16 7 C 0.07 1.91 6.60 22.68 0.15 2.06 16 8 O -0.29 -7.68 10.29 -76.86 -0.79 -8.47 16 9 C 0.07 1.24 4.11 30.43 0.13 1.36 16 10 H 0.19 1.67 8.14 -2.39 -0.02 1.65 16 11 C 0.50 13.41 7.07 87.66 0.62 14.03 16 12 O -0.57 -22.61 16.09 15.19 0.24 -22.37 16 13 N -0.67 -15.33 5.44 -435.71 -2.37 -17.70 16 14 C 0.11 3.62 6.16 46.44 0.29 3.91 16 15 H 0.10 3.98 7.40 -2.38 -0.02 3.96 16 16 C -0.18 -6.73 7.27 -8.44 -0.06 -6.79 16 17 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 18 C 0.19 9.43 5.73 86.54 0.50 9.93 16 19 N -0.62 -32.05 3.38 -688.17 -2.33 -34.38 16 20 C -0.24 -13.44 10.35 84.03 0.87 -12.57 16 21 H 0.09 4.51 7.84 -2.92 -0.02 4.48 16 22 C -0.06 -3.69 5.40 84.86 0.46 -3.24 16 23 N -0.95 -57.89 10.86 21.65 0.24 -57.66 16 24 Si 0.98 45.43 29.56 68.60 2.03 47.45 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.14 5.95 7.03 86.53 0.61 6.56 16 29 C -0.15 -4.80 6.91 -9.89 -0.07 -4.87 16 30 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 31 C -0.09 -1.24 6.64 30.73 0.20 -1.04 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.20 8.01 -2.39 -0.02 1.18 16 34 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.42 5.74 8.83 -92.71 -0.82 4.92 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.06 3.32 6.51 -2.39 -0.02 3.30 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.11 1.28 7.78 -2.39 -0.02 1.26 16 45 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -81.69 374.19 2.04 -79.66 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.19 Total: 18.08 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.82 Total: -4.63 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.46 Total: -109.73 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.55 Total: -30.84 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -81.69 2.04 -79.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963177871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.867 kcal (2) G-P(sol) polarization free energy of solvation -81.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds