Wall clock time and date at job start Tue Mar 31 2020 16:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46926 * 2 1 4 4 C 1.38695 * 119.89621 * 270.29005 * 3 2 1 5 5 C 1.37839 * 120.65417 * 180.27702 * 4 3 2 6 6 C 1.38976 * 119.97089 * 359.71243 * 5 4 3 7 7 O 1.34912 * 133.11413 * 180.02562 * 6 5 4 8 8 C 1.33800 * 111.34664 * 179.97438 * 7 6 5 9 9 C 1.36047 * 109.85622 * 359.97438 * 8 7 6 10 10 C 1.47083 * 127.14347 * 180.02562 * 9 8 7 11 11 O 1.21650 * 120.00104 * 204.46548 * 10 9 8 12 12 N 1.34777 * 119.99837 * 24.46957 * 10 9 8 13 13 C 1.47415 * 125.64889 * 5.18063 * 12 10 9 14 14 C 1.55129 * 104.72514 * 155.82050 * 13 12 10 15 15 C 1.55158 * 101.48359 * 37.29073 * 14 13 12 16 16 H 1.09001 * 110.71972 * 82.70295 * 15 14 13 17 17 N 1.46498 * 110.72137 * 205.97188 * 15 14 13 18 18 C 1.36940 * 120.00245 * 199.98008 * 17 15 14 19 19 H 1.08003 * 119.99650 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00204 * 180.02562 * 18 17 15 21 21 N 1.31625 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47447 * 89.99733 * 22 20 18 24 24 H 1.48503 * 109.46884 * 209.99801 * 22 20 18 25 25 H 1.48496 * 109.46827 * 329.99614 * 22 20 18 26 26 C 1.47023 * 125.64296 * 185.48843 * 12 10 9 27 27 C 1.40229 * 119.25525 * 359.97438 * 6 5 4 28 28 C 1.37839 * 119.90356 * 89.99912 * 3 2 1 29 29 H 1.08999 * 109.47100 * 60.00701 * 1 2 3 30 30 H 1.09002 * 109.46406 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46760 * 299.99812 * 1 2 3 32 32 H 1.08993 * 109.47373 * 239.99771 * 2 1 3 33 33 H 1.08999 * 109.47100 * 119.99299 * 2 1 3 34 34 H 1.07994 * 119.67058 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.01626 * 179.72403 * 5 4 3 36 36 H 1.08010 * 125.07264 * 180.02562 * 8 7 6 37 37 H 1.09004 * 110.36800 * 274.74940 * 13 12 10 38 38 H 1.09003 * 110.36913 * 37.06877 * 13 12 10 39 39 H 1.09008 * 111.18897 * 279.19451 * 14 13 12 40 40 H 1.08992 * 110.91279 * 155.27153 * 14 13 12 41 41 H 0.97007 * 120.00226 * 19.97789 * 17 15 14 42 42 H 0.97001 * 119.99963 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.88658 * 300.43636 * 26 12 10 44 44 H 1.08996 * 109.88312 * 61.45692 * 26 12 10 45 45 H 1.08003 * 120.18183 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2570 2.0746 -1.2024 5 6 2.7217 3.3722 -1.2206 6 6 2.9639 4.0398 -0.0260 7 8 3.4085 5.2802 0.2633 8 6 3.4815 5.4755 1.5850 9 6 3.0808 4.3529 2.2408 10 6 3.0114 4.1516 3.6961 11 8 3.0734 3.0280 4.1584 12 7 2.8791 5.2119 4.5175 13 6 2.6845 6.6097 4.0916 14 6 1.9878 7.2955 5.2960 15 6 2.6943 6.6079 6.4941 16 1 3.6485 7.0897 6.7073 17 7 1.8321 6.6160 7.6785 18 6 2.3769 6.4458 8.9233 19 1 3.4423 6.3060 9.0318 20 6 1.5599 6.4530 10.0454 21 7 0.2615 6.6239 9.9131 22 14 2.3032 6.2215 11.7434 23 1 2.6698 7.5451 12.3081 24 1 1.3127 5.5616 12.6316 25 1 3.5180 5.3736 11.6406 26 6 2.9114 5.1668 5.9867 27 6 2.7297 3.3786 1.1882 28 6 2.2614 2.0687 1.1949 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0706 1.5603 -2.1335 35 1 2.8973 3.8700 -2.1629 36 1 3.8089 6.3885 2.0603 37 1 3.6457 7.0814 3.8874 38 1 2.0453 6.6520 3.2096 39 1 0.9176 7.0884 5.3024 40 1 2.1764 8.3690 5.2949 41 1 0.8752 6.7420 7.5810 42 1 -0.3094 6.6292 10.6973 43 1 2.1152 4.5201 6.3554 44 1 3.8782 4.7940 6.3250 45 1 2.0822 1.5608 2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968683519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:39 Heat of formation + Delta-G solvation = 6.442893 kcal Electronic energy + Delta-G solvation = -27100.529077 eV Core-core repulsion = 23277.548169 eV Total energy + Delta-G solvation = -3822.980908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.77801 -39.62058 -38.65792 -37.23049 -34.23613 -33.92286 -33.04706 -31.56461 -29.93158 -29.64114 -29.23517 -27.46434 -24.87678 -24.27377 -23.32605 -22.94371 -21.99307 -21.28488 -20.10161 -19.28439 -17.88917 -17.41891 -17.06258 -16.57864 -16.03664 -15.91668 -15.74518 -14.91579 -14.75972 -14.58805 -14.24675 -13.80536 -13.75226 -13.50731 -13.48964 -13.35147 -13.04333 -12.76164 -12.71140 -12.54055 -11.95801 -11.84614 -11.65421 -11.53677 -11.29955 -11.18532 -11.02462 -10.85934 -10.78912 -10.46193 -10.27212 -10.07310 -9.87437 -9.76377 -9.02968 -8.71455 -8.49848 -8.33853 -7.11598 -5.85821 -3.17017 0.58912 1.06390 1.65482 2.41985 3.03837 3.21613 3.40002 3.45902 3.47371 3.54094 4.14399 4.32881 4.48648 4.52592 4.64176 4.76138 4.83673 4.87307 5.02129 5.05382 5.13261 5.15259 5.17057 5.26100 5.40321 5.42010 5.53541 5.62952 5.65759 5.67144 5.73312 5.86611 5.93159 5.94805 5.97508 6.04162 6.13830 6.24476 6.30883 6.33699 6.39651 6.46572 6.65063 6.84293 6.84960 7.63101 7.69757 8.30506 8.33073 9.43575 9.96349 10.30901 11.36153 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.002515 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.634949 B =11132.158199 C =12084.686403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.104 4.104 6 C 0.042 3.958 7 O -0.185 6.185 8 C 0.055 3.945 9 C -0.215 4.215 10 C 0.594 3.406 11 O -0.536 6.536 12 N -0.608 5.608 13 C 0.092 3.908 14 C -0.139 4.139 15 C 0.172 3.828 16 H 0.067 0.933 17 N -0.713 5.713 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.084 3.916 27 C -0.089 4.089 28 C -0.058 4.058 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.219 0.781 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -4.681 -25.462 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.005 4.005 7 O -0.085 6.085 8 C -0.012 4.012 9 C -0.220 4.220 10 C 0.383 3.617 11 O -0.414 6.414 12 N -0.342 5.342 13 C -0.031 4.031 14 C -0.178 4.178 15 C 0.060 3.940 16 H 0.085 0.915 17 N -0.353 5.353 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.041 4.041 27 C -0.090 4.090 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.209 -5.184 -25.259 26.127 hybrid contribution 0.084 -0.020 1.138 1.141 sum 4.293 -5.204 -24.121 25.047 Atomic orbital electron populations 1.21770 0.94602 1.01822 1.02370 1.20512 0.96272 0.92027 1.03107 1.19821 1.00625 0.96854 0.92405 1.20790 0.98896 0.93233 0.97998 1.19874 1.03461 0.94422 0.94449 1.19572 1.01942 0.83445 0.95518 1.83847 1.69511 1.30496 1.24598 1.24757 0.97637 0.99163 0.79671 1.21026 1.12000 0.94930 0.94008 1.16759 0.77219 0.83884 0.83823 1.90794 1.50902 1.22779 1.76914 1.48425 1.70908 1.06622 1.08237 1.22572 0.99769 0.81917 0.98857 1.23094 1.00762 0.99977 0.93932 1.21213 0.94936 0.90856 0.87000 0.91546 1.42372 1.06418 1.85901 1.00561 1.19249 0.92647 1.42558 0.83576 0.90905 1.24779 0.95438 1.02179 0.98100 1.69662 1.02766 1.56159 1.29108 0.86168 0.78001 0.77691 0.84192 1.21581 1.21678 1.20597 1.23296 1.01970 1.02479 0.76378 1.19403 1.03364 0.95329 0.90934 1.20540 0.96373 0.92058 0.98591 0.92570 0.92295 0.92339 0.90870 0.90701 0.84756 0.84894 0.76470 0.91333 0.90810 0.90289 0.89799 0.77820 0.93314 0.90687 0.92227 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.08 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.10 -0.99 5.13 -104.60 -0.54 -1.53 16 4 C -0.09 -0.79 9.67 -39.56 -0.38 -1.18 16 5 C -0.10 -0.98 10.06 -39.45 -0.40 -1.38 16 6 C 0.04 0.50 7.39 -38.56 -0.28 0.22 16 7 O -0.18 -2.09 10.53 5.34 0.06 -2.04 16 8 C 0.06 0.59 10.23 29.95 0.31 0.90 16 9 C -0.22 -3.05 5.96 -103.25 -0.62 -3.67 16 10 C 0.59 10.23 7.80 -12.67 -0.10 10.13 16 11 O -0.54 -11.22 17.26 5.23 0.09 -11.13 16 12 N -0.61 -9.66 3.32 -171.78 -0.57 -10.23 16 13 C 0.09 1.08 5.21 -2.42 -0.01 1.07 16 14 C -0.14 -1.96 6.71 -24.46 -0.16 -2.13 16 15 C 0.17 3.17 3.59 -66.10 -0.24 2.94 16 16 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 17 N -0.71 -17.03 5.18 -51.65 -0.27 -17.29 16 18 C -0.25 -6.69 9.98 -15.06 -0.15 -6.84 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.08 1.57 6.62 -3.06 -0.02 1.55 16 27 C -0.09 -1.24 6.32 -104.98 -0.66 -1.91 16 28 C -0.06 -0.76 9.73 -39.40 -0.38 -1.14 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.22 1.53 5.86 -52.48 -0.31 1.23 16 37 H 0.07 0.61 7.33 -51.93 -0.38 0.23 16 38 H 0.07 0.74 6.91 -51.93 -0.36 0.38 16 39 H 0.08 1.20 8.00 -51.92 -0.42 0.79 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.39 9.86 7.71 -40.82 -0.31 9.55 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.14 1.92 7.94 -52.48 -0.42 1.50 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -33.32 375.12 -9.25 -42.58 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.38 Total: 7.08 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.54 Total: -4.87 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.11 Total: -54.28 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.15 Total: -13.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.32 -9.25 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968683519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.021 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds