Wall clock time and date at job start Tue Mar 31 2020 16:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46926 * 2 1 4 4 C 1.38695 * 119.89621 * 270.29005 * 3 2 1 5 5 C 1.37839 * 120.65417 * 180.27702 * 4 3 2 6 6 C 1.38976 * 119.97089 * 359.71243 * 5 4 3 7 7 O 1.34912 * 133.11413 * 180.02562 * 6 5 4 8 8 C 1.33800 * 111.34664 * 179.97438 * 7 6 5 9 9 C 1.36047 * 109.85622 * 359.97438 * 8 7 6 10 10 C 1.47083 * 127.14347 * 180.02562 * 9 8 7 11 11 O 1.21650 * 120.00104 * 204.46548 * 10 9 8 12 12 N 1.34777 * 119.99837 * 24.46957 * 10 9 8 13 13 C 1.47415 * 125.64889 * 5.18063 * 12 10 9 14 14 C 1.55129 * 104.72514 * 155.82050 * 13 12 10 15 15 C 1.55158 * 101.48359 * 37.29073 * 14 13 12 16 16 H 1.09001 * 110.71972 * 82.70295 * 15 14 13 17 17 N 1.46498 * 110.72137 * 205.97188 * 15 14 13 18 18 C 1.36940 * 120.00245 * 199.98008 * 17 15 14 19 19 H 1.08003 * 119.99650 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00204 * 180.02562 * 18 17 15 21 21 N 1.31625 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47447 * 89.99733 * 22 20 18 24 24 H 1.48503 * 109.46884 * 209.99801 * 22 20 18 25 25 H 1.48496 * 109.46827 * 329.99614 * 22 20 18 26 26 C 1.47023 * 125.64296 * 185.48843 * 12 10 9 27 27 C 1.40229 * 119.25525 * 359.97438 * 6 5 4 28 28 C 1.37839 * 119.90356 * 89.99912 * 3 2 1 29 29 H 1.08999 * 109.47100 * 60.00701 * 1 2 3 30 30 H 1.09002 * 109.46406 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46760 * 299.99812 * 1 2 3 32 32 H 1.08993 * 109.47373 * 239.99771 * 2 1 3 33 33 H 1.08999 * 109.47100 * 119.99299 * 2 1 3 34 34 H 1.07994 * 119.67058 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.01626 * 179.72403 * 5 4 3 36 36 H 1.08010 * 125.07264 * 180.02562 * 8 7 6 37 37 H 1.09004 * 110.36800 * 274.74940 * 13 12 10 38 38 H 1.09003 * 110.36913 * 37.06877 * 13 12 10 39 39 H 1.09008 * 111.18897 * 279.19451 * 14 13 12 40 40 H 1.08992 * 110.91279 * 155.27153 * 14 13 12 41 41 H 0.97007 * 120.00226 * 19.97789 * 17 15 14 42 42 H 0.97001 * 119.99963 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.88658 * 300.43636 * 26 12 10 44 44 H 1.08996 * 109.88312 * 61.45692 * 26 12 10 45 45 H 1.08003 * 120.18183 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2570 2.0746 -1.2024 5 6 2.7217 3.3722 -1.2206 6 6 2.9639 4.0398 -0.0260 7 8 3.4085 5.2802 0.2633 8 6 3.4815 5.4755 1.5850 9 6 3.0808 4.3529 2.2408 10 6 3.0114 4.1516 3.6961 11 8 3.0734 3.0280 4.1584 12 7 2.8791 5.2119 4.5175 13 6 2.6845 6.6097 4.0916 14 6 1.9878 7.2955 5.2960 15 6 2.6943 6.6079 6.4941 16 1 3.6485 7.0897 6.7073 17 7 1.8321 6.6160 7.6785 18 6 2.3769 6.4458 8.9233 19 1 3.4423 6.3060 9.0318 20 6 1.5599 6.4530 10.0454 21 7 0.2615 6.6239 9.9131 22 14 2.3032 6.2215 11.7434 23 1 2.6698 7.5451 12.3081 24 1 1.3127 5.5616 12.6316 25 1 3.5180 5.3736 11.6406 26 6 2.9114 5.1668 5.9867 27 6 2.7297 3.3786 1.1882 28 6 2.2614 2.0687 1.1949 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0706 1.5603 -2.1335 35 1 2.8973 3.8700 -2.1629 36 1 3.8089 6.3885 2.0603 37 1 3.6457 7.0814 3.8874 38 1 2.0453 6.6520 3.2096 39 1 0.9176 7.0884 5.3024 40 1 2.1764 8.3690 5.2949 41 1 0.8752 6.7420 7.5810 42 1 -0.3094 6.6292 10.6973 43 1 2.1152 4.5201 6.3554 44 1 3.8782 4.7940 6.3250 45 1 2.0822 1.5608 2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968683519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:39 Heat of formation + Delta-G solvation = -14.520297 kcal Electronic energy + Delta-G solvation = -27101.438109 eV Core-core repulsion = 23277.548169 eV Total energy + Delta-G solvation = -3823.889940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.66319 -40.94398 -39.45078 -38.66040 -36.00057 -34.66140 -34.12303 -33.20025 -31.23047 -30.77591 -30.02834 -28.93614 -26.32993 -25.28879 -24.69036 -23.86646 -23.09338 -22.07891 -21.55140 -20.44035 -19.32395 -18.80579 -18.11672 -17.69359 -17.20298 -17.02711 -16.74219 -16.43360 -15.94658 -15.52622 -15.44253 -15.27541 -15.03623 -14.77797 -14.45644 -14.30974 -14.20308 -13.94640 -13.73068 -13.48067 -13.44714 -13.17173 -12.88709 -12.60173 -12.54464 -12.47057 -12.30059 -12.12653 -11.97253 -11.78450 -11.75053 -11.65695 -11.30977 -11.16569 -11.00868 -9.78018 -9.52622 -9.29354 -9.12042 -7.98978 -5.29224 -0.27127 0.22657 0.68498 1.46140 1.47920 1.55431 1.56111 1.82140 2.06109 2.53778 2.64530 3.27903 3.32376 3.37656 3.62348 3.75049 3.80397 3.86932 3.89633 4.08117 4.18942 4.24668 4.30080 4.32619 4.35147 4.48474 4.48808 4.50476 4.60893 4.71576 4.78344 4.85630 4.96326 4.98480 5.06383 5.11281 5.17015 5.17432 5.21265 5.29107 5.35090 5.36264 5.50553 5.54557 5.60679 6.01071 6.22827 6.43722 7.01084 7.29684 8.01902 8.24339 9.24006 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.002515 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.634949 B =11132.158199 C =12084.686403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.087 4.087 5 C -0.093 4.093 6 C 0.026 3.974 7 O -0.177 6.177 8 C 0.099 3.901 9 C -0.260 4.260 10 C 0.591 3.409 11 O -0.593 6.593 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.128 4.128 15 C 0.167 3.833 16 H 0.080 0.920 17 N -0.726 5.726 18 C -0.246 4.246 19 H 0.079 0.921 20 C -0.072 4.072 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.272 1.272 26 C 0.095 3.905 27 C -0.117 4.117 28 C -0.096 4.096 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.261 0.739 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.030 0.970 44 H 0.048 0.952 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 -3.120 -29.237 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.105 4.105 5 C -0.111 4.111 6 C -0.020 4.020 7 O -0.076 6.076 8 C 0.030 3.970 9 C -0.264 4.264 10 C 0.382 3.618 11 O -0.475 6.475 12 N -0.340 5.340 13 C -0.029 4.029 14 C -0.167 4.167 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.365 5.365 18 C -0.378 4.378 19 H 0.097 0.903 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.197 1.197 26 C -0.031 4.031 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.192 0.808 35 H 0.186 0.814 36 H 0.276 0.724 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.208 0.792 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.663 -3.590 -29.093 29.856 hybrid contribution -0.335 -0.559 2.180 2.276 sum 5.327 -4.149 -26.913 27.747 Atomic orbital electron populations 1.21752 0.94194 1.02576 1.01802 1.20591 0.96548 0.90951 1.03886 1.20127 0.99089 0.97648 0.92088 1.21245 0.97522 0.93113 0.98585 1.20388 1.01414 0.94430 0.94838 1.19874 1.02939 0.83580 0.95593 1.83876 1.69012 1.30130 1.24565 1.25373 0.93648 0.98757 0.79177 1.20795 1.16258 0.97261 0.92119 1.17263 0.76046 0.83184 0.85275 1.90750 1.53572 1.25057 1.78114 1.48430 1.70416 1.08443 1.06688 1.22933 1.02463 0.78993 0.98493 1.23046 0.99595 1.01541 0.92490 1.21455 0.95274 0.90832 0.86822 0.90250 1.42548 1.06495 1.85948 1.01492 1.19643 0.92926 1.40331 0.84861 0.90320 1.25567 0.95902 1.03327 1.01691 1.69810 1.03988 1.58418 1.29537 0.85177 0.77153 0.77729 0.79923 1.20824 1.22503 1.19721 1.22869 0.99644 1.01836 0.78785 1.19678 1.04275 0.95825 0.92082 1.20495 0.99499 0.92769 0.98688 0.91385 0.90914 0.94609 0.88068 0.91923 0.80797 0.81435 0.72380 0.86735 0.88144 0.91852 0.86772 0.79183 0.93948 0.95163 0.93307 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.39 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.09 -1.78 5.13 -19.85 -0.10 -1.88 16 4 C -0.09 -1.24 9.67 22.28 0.22 -1.02 16 5 C -0.09 -1.43 10.06 22.35 0.22 -1.21 16 6 C 0.03 0.58 7.39 22.93 0.17 0.74 16 7 O -0.18 -3.40 10.53 -3.80 -0.04 -3.44 16 8 C 0.10 1.80 10.23 67.31 0.69 2.49 16 9 C -0.26 -7.31 5.96 -18.98 -0.11 -7.42 16 10 C 0.59 21.19 7.80 86.56 0.68 21.86 16 11 O -0.59 -27.11 17.26 -4.19 -0.07 -27.19 16 12 N -0.61 -19.29 3.32 -815.61 -2.71 -22.01 16 13 C 0.09 1.87 5.21 86.93 0.45 2.33 16 14 C -0.13 -3.36 6.71 32.06 0.22 -3.15 16 15 C 0.17 6.09 3.59 46.18 0.17 6.26 16 16 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 17 N -0.73 -35.49 5.18 -317.33 -1.64 -37.13 16 18 C -0.25 -13.41 9.98 84.03 0.84 -12.57 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 22 Si 0.97 46.14 29.55 68.60 2.03 48.16 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.09 3.70 6.62 86.73 0.57 4.28 16 27 C -0.12 -3.32 6.32 -20.09 -0.13 -3.45 16 28 C -0.10 -2.71 9.73 22.38 0.22 -2.49 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.26 2.19 5.86 -2.91 -0.02 2.17 16 37 H 0.11 1.38 7.33 -2.38 -0.02 1.36 16 38 H 0.10 1.59 6.91 -2.39 -0.02 1.57 16 39 H 0.06 1.88 8.00 -2.38 -0.02 1.86 16 40 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.38 19.83 7.71 -92.70 -0.72 19.12 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.10 3.41 7.94 -2.91 -0.02 3.39 16 Total: -1.00 -79.98 375.12 3.60 -76.38 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.30 Total: 25.27 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.46 Total: -1.37 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.07 Total: -117.82 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.11 Total: -30.63 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -79.98 3.60 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968683519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.863 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds