Wall clock time and date at job start Tue Mar 31 2020 16:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46952 * 2 1 4 4 C 1.46245 * 126.96237 * 270.00245 * 3 2 1 5 5 C 1.39708 * 134.19093 * 359.97438 * 4 3 2 6 6 C 1.36626 * 119.70841 * 180.02562 * 5 4 3 7 7 C 1.38833 * 120.44834 * 0.02562 * 6 5 4 8 8 C 1.37795 * 120.74307 * 359.97438 * 7 6 5 9 9 C 1.39036 * 119.85360 * 359.97438 * 8 7 6 10 10 O 1.34716 * 133.24043 * 180.33335 * 9 8 7 11 11 C 1.34940 * 110.86184 * 180.15393 * 10 9 8 12 12 C 1.46973 * 125.13180 * 179.81184 * 11 10 9 13 13 O 1.21661 * 120.00148 * 179.70096 * 12 11 10 14 14 N 1.34781 * 120.00301 * 359.70394 * 12 11 10 15 15 C 1.47026 * 125.64203 * 0.02562 * 14 12 11 16 16 C 1.54321 * 107.26791 * 181.03648 * 15 14 12 17 17 C 1.55448 * 102.96961 * 22.19024 * 16 15 14 18 18 H 1.09004 * 111.00873 * 82.52495 * 17 16 15 19 19 N 1.46502 * 111.11836 * 206.45988 * 17 16 15 20 20 C 1.36930 * 120.00178 * 198.55593 * 19 17 16 21 21 H 1.08001 * 119.99945 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00259 * 180.02562 * 20 19 17 23 23 N 1.31612 * 119.99703 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46746 * 90.00312 * 24 22 20 26 26 H 1.48501 * 109.47078 * 209.99900 * 24 22 20 27 27 H 1.48499 * 109.47401 * 330.00444 * 24 22 20 28 28 C 1.47419 * 125.65221 * 179.97438 * 14 12 11 29 29 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46721 * 299.99625 * 1 2 3 31 31 H 1.08992 * 109.47040 * 59.99616 * 1 2 3 32 32 H 1.08996 * 109.47061 * 240.00262 * 2 1 3 33 33 H 1.09000 * 109.47111 * 120.00002 * 2 1 3 34 34 H 1.07995 * 120.14872 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.77740 * 179.97438 * 6 5 4 36 36 H 1.08000 * 119.63293 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.07447 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.88266 * 300.45023 * 15 14 12 39 39 H 1.08997 * 109.88244 * 61.46381 * 15 14 12 40 40 H 1.08998 * 110.71927 * 140.55469 * 16 15 14 41 41 H 1.08997 * 110.72400 * 263.82847 * 16 15 14 42 42 H 0.97005 * 119.99716 * 18.56000 * 19 17 16 43 43 H 0.97000 * 120.00104 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.36926 * 274.73432 * 28 14 12 45 45 H 1.08995 * 110.36556 * 36.94716 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3254 2.2499 -1.1685 5 6 2.2541 2.0472 -2.5490 6 6 2.6106 3.0544 -3.4005 7 6 3.0431 4.2763 -2.9031 8 6 3.1205 4.4963 -1.5450 9 6 2.7621 3.4868 -0.6588 10 8 2.7275 3.4082 0.6857 11 6 2.3026 2.1914 1.0852 12 6 2.1513 1.7655 2.4837 13 8 1.7541 0.6442 2.7386 14 7 2.4524 2.6172 3.4839 15 6 2.9396 3.9946 3.3189 16 6 3.1715 4.5708 4.7316 17 6 3.3418 3.2961 5.6047 18 1 4.3619 2.9162 5.5470 19 7 2.9573 3.5532 6.9948 20 6 3.3782 2.7105 7.9887 21 1 3.9939 1.8566 7.7478 22 6 3.0134 2.9538 9.3058 23 7 2.2626 3.9942 9.5991 24 14 3.5870 1.8039 10.6615 25 1 4.8890 2.2786 11.1952 26 1 2.5812 1.7859 11.7538 27 1 3.7470 0.4331 10.1132 28 6 2.3470 2.3225 4.9245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9196 1.0983 -2.9413 35 1 2.5563 2.8988 -4.4679 36 1 3.3212 5.0635 -3.5882 37 1 3.4580 5.4512 -1.1698 38 1 3.8761 3.9923 2.7612 39 1 2.1952 4.5903 2.7907 40 1 4.0760 5.1786 4.7564 41 1 2.3077 5.1495 5.0587 42 1 2.4045 4.3204 7.2111 43 1 2.0080 4.1645 10.5195 44 1 1.3324 2.5091 5.2767 45 1 2.6323 1.2893 5.1222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970834920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:17 Heat of formation + Delta-G solvation = 6.573132 kcal Electronic energy + Delta-G solvation = -27538.328348 eV Core-core repulsion = 23715.353087 eV Total energy + Delta-G solvation = -3822.975261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.72745 -39.69151 -38.08721 -37.45881 -34.98772 -34.14472 -31.71529 -31.37224 -30.55444 -29.79986 -29.45130 -27.61576 -25.01207 -23.77557 -23.45907 -23.01537 -22.33841 -20.53034 -20.00294 -19.61875 -18.00395 -17.34886 -17.07105 -16.65878 -16.29185 -15.90044 -15.56004 -14.77991 -14.60219 -14.47038 -14.24330 -14.01870 -13.85822 -13.50520 -13.27654 -13.15359 -12.81695 -12.67299 -12.55833 -12.47094 -12.26567 -12.24084 -11.66136 -11.45456 -11.28921 -11.13434 -11.01566 -10.85702 -10.75069 -10.33837 -10.16017 -10.07067 -9.97344 -9.77628 -9.04690 -8.93600 -8.60152 -8.25874 -7.11006 -5.85901 -3.16910 0.37184 1.05570 1.65835 2.32148 3.08229 3.15551 3.39820 3.40522 3.46423 3.47907 4.15105 4.27250 4.52518 4.55848 4.65304 4.72306 4.91968 4.95232 5.05920 5.10642 5.18278 5.24105 5.29524 5.30884 5.42570 5.52453 5.59587 5.67192 5.76150 5.83051 5.88147 5.90753 5.94769 6.06171 6.10283 6.10958 6.16543 6.20229 6.24203 6.27910 6.33966 6.46066 6.53848 6.82447 6.87453 7.58861 7.64156 8.10397 8.31580 9.43731 9.96107 10.31225 11.36082 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.002628 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.103319 B =10653.132052 C =11614.880125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.085 4.085 4 C -0.137 4.137 5 C -0.060 4.060 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.110 4.110 9 C 0.067 3.933 10 O -0.177 6.177 11 C -0.018 4.018 12 C 0.604 3.396 13 O -0.517 6.517 14 N -0.600 5.600 15 C 0.106 3.894 16 C -0.139 4.139 17 C 0.172 3.828 18 H 0.066 0.934 19 N -0.711 5.711 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.082 3.918 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.072 0.928 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 0.206 -27.406 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.105 4.105 8 C -0.128 4.128 9 C 0.018 3.982 10 O -0.079 6.079 11 C -0.068 4.068 12 C 0.391 3.609 13 O -0.395 6.395 14 N -0.332 5.332 15 C -0.017 4.017 16 C -0.178 4.178 17 C 0.060 3.940 18 H 0.084 0.916 19 N -0.351 5.351 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.043 4.043 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.210 -0.329 -26.938 26.941 hybrid contribution 0.055 -0.230 0.701 0.740 sum 0.265 -0.559 -26.238 26.245 Atomic orbital electron populations 1.21640 0.94215 1.01924 1.01900 1.20177 0.96389 0.89577 1.03841 1.21365 1.00729 0.97368 0.89399 1.19811 1.05610 0.94069 0.94280 1.20344 0.97677 0.99490 0.90303 1.20776 1.01735 0.93464 0.99980 1.20985 0.98234 0.97575 0.93748 1.20006 1.03940 0.97705 0.91171 1.19791 1.00721 0.96174 0.81479 1.84157 1.70855 1.32380 1.20478 1.21889 1.06057 0.83994 0.94840 1.16298 0.79064 0.84442 0.81095 1.90847 1.47660 1.18935 1.82079 1.48461 1.63267 1.14010 1.07484 1.22081 0.99274 0.81870 0.98473 1.22965 1.02914 0.98962 0.92965 1.21369 0.95826 0.91444 0.85371 0.91623 1.42300 1.61420 1.31856 0.99500 1.19254 1.26433 1.05484 0.86812 0.90890 1.24775 1.00103 0.98203 0.97400 1.69655 1.40498 1.28980 1.18582 0.86165 0.77806 0.80234 0.81831 1.21577 1.21673 1.20574 1.23547 1.02232 1.02271 0.76210 0.92044 0.92231 0.93136 0.91059 0.88437 0.85401 0.85252 0.84671 0.84734 0.91294 0.91426 0.90006 0.90308 0.77789 0.93314 0.90949 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.90 37.16 0.37 -1.15 16 2 C -0.06 -0.74 5.86 -27.88 -0.16 -0.90 16 3 C -0.09 -1.13 5.64 -102.28 -0.58 -1.71 16 4 C -0.14 -1.62 6.37 -105.19 -0.67 -2.29 16 5 C -0.06 -0.54 10.06 -39.61 -0.40 -0.94 16 6 C -0.14 -1.03 9.98 -39.94 -0.40 -1.43 16 7 C -0.09 -0.63 10.01 -39.52 -0.40 -1.03 16 8 C -0.11 -1.00 10.07 -39.45 -0.40 -1.40 16 9 C 0.07 0.81 7.41 -38.35 -0.28 0.52 16 10 O -0.18 -2.42 8.09 2.79 0.02 -2.40 16 11 C -0.02 -0.27 6.90 -36.91 -0.25 -0.52 16 12 C 0.60 10.24 7.83 -12.72 -0.10 10.14 16 13 O -0.52 -9.78 14.87 5.22 0.08 -9.70 16 14 N -0.60 -9.97 3.33 -171.95 -0.57 -10.54 16 15 C 0.11 1.49 5.53 -3.06 -0.02 1.47 16 16 C -0.14 -2.11 6.59 -24.74 -0.16 -2.28 16 17 C 0.17 3.30 3.70 -65.61 -0.24 3.05 16 18 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 19 N -0.71 -17.07 5.28 -51.19 -0.27 -17.34 16 20 C -0.25 -6.71 9.98 -15.06 -0.15 -6.86 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.08 1.54 6.59 -2.52 -0.02 1.53 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.32 6.38 -51.93 -0.33 0.99 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 39 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 42 H 0.39 9.81 7.72 -40.82 -0.32 9.50 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -31.17 374.31 -9.83 -41.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.48 Total: 7.08 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.96 Total: -4.12 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.12 Total: -54.54 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.10 Total: -12.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.17 -9.83 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970834920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.576 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds