Wall clock time and date at job start Tue Mar 31 2020 16:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46952 * 2 1 4 4 C 1.46245 * 126.96237 * 270.00245 * 3 2 1 5 5 C 1.39708 * 134.19093 * 359.97438 * 4 3 2 6 6 C 1.36626 * 119.70841 * 180.02562 * 5 4 3 7 7 C 1.38833 * 120.44834 * 0.02562 * 6 5 4 8 8 C 1.37795 * 120.74307 * 359.97438 * 7 6 5 9 9 C 1.39036 * 119.85360 * 359.97438 * 8 7 6 10 10 O 1.34716 * 133.24043 * 180.33335 * 9 8 7 11 11 C 1.34940 * 110.86184 * 180.15393 * 10 9 8 12 12 C 1.46973 * 125.13180 * 179.81184 * 11 10 9 13 13 O 1.21661 * 120.00148 * 179.70096 * 12 11 10 14 14 N 1.34781 * 120.00301 * 359.70394 * 12 11 10 15 15 C 1.47026 * 125.64203 * 0.02562 * 14 12 11 16 16 C 1.54321 * 107.26791 * 181.03648 * 15 14 12 17 17 C 1.55448 * 102.96961 * 22.19024 * 16 15 14 18 18 H 1.09004 * 111.00873 * 82.52495 * 17 16 15 19 19 N 1.46502 * 111.11836 * 206.45988 * 17 16 15 20 20 C 1.36930 * 120.00178 * 198.55593 * 19 17 16 21 21 H 1.08001 * 119.99945 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00259 * 180.02562 * 20 19 17 23 23 N 1.31612 * 119.99703 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46746 * 90.00312 * 24 22 20 26 26 H 1.48501 * 109.47078 * 209.99900 * 24 22 20 27 27 H 1.48499 * 109.47401 * 330.00444 * 24 22 20 28 28 C 1.47419 * 125.65221 * 179.97438 * 14 12 11 29 29 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46721 * 299.99625 * 1 2 3 31 31 H 1.08992 * 109.47040 * 59.99616 * 1 2 3 32 32 H 1.08996 * 109.47061 * 240.00262 * 2 1 3 33 33 H 1.09000 * 109.47111 * 120.00002 * 2 1 3 34 34 H 1.07995 * 120.14872 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.77740 * 179.97438 * 6 5 4 36 36 H 1.08000 * 119.63293 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.07447 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.88266 * 300.45023 * 15 14 12 39 39 H 1.08997 * 109.88244 * 61.46381 * 15 14 12 40 40 H 1.08998 * 110.71927 * 140.55469 * 16 15 14 41 41 H 1.08997 * 110.72400 * 263.82847 * 16 15 14 42 42 H 0.97005 * 119.99716 * 18.56000 * 19 17 16 43 43 H 0.97000 * 120.00104 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.36926 * 274.73432 * 28 14 12 45 45 H 1.08995 * 110.36556 * 36.94716 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3254 2.2499 -1.1685 5 6 2.2541 2.0472 -2.5490 6 6 2.6106 3.0544 -3.4005 7 6 3.0431 4.2763 -2.9031 8 6 3.1205 4.4963 -1.5450 9 6 2.7621 3.4868 -0.6588 10 8 2.7275 3.4082 0.6857 11 6 2.3026 2.1914 1.0852 12 6 2.1513 1.7655 2.4837 13 8 1.7541 0.6442 2.7386 14 7 2.4524 2.6172 3.4839 15 6 2.9396 3.9946 3.3189 16 6 3.1715 4.5708 4.7316 17 6 3.3418 3.2961 5.6047 18 1 4.3619 2.9162 5.5470 19 7 2.9573 3.5532 6.9948 20 6 3.3782 2.7105 7.9887 21 1 3.9939 1.8566 7.7478 22 6 3.0134 2.9538 9.3058 23 7 2.2626 3.9942 9.5991 24 14 3.5870 1.8039 10.6615 25 1 4.8890 2.2786 11.1952 26 1 2.5812 1.7859 11.7538 27 1 3.7470 0.4331 10.1132 28 6 2.3470 2.3225 4.9245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9196 1.0983 -2.9413 35 1 2.5563 2.8988 -4.4679 36 1 3.3212 5.0635 -3.5882 37 1 3.4580 5.4512 -1.1698 38 1 3.8761 3.9923 2.7612 39 1 2.1952 4.5903 2.7907 40 1 4.0760 5.1786 4.7564 41 1 2.3077 5.1495 5.0587 42 1 2.4045 4.3204 7.2111 43 1 2.0080 4.1645 10.5195 44 1 1.3324 2.5091 5.2767 45 1 2.6323 1.2893 5.1222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970834920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:16 Heat of formation + Delta-G solvation = -11.135807 kcal Electronic energy + Delta-G solvation = -27539.096265 eV Core-core repulsion = 23715.353087 eV Total energy + Delta-G solvation = -3823.743178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61974 -41.00926 -38.91324 -38.76579 -36.15361 -35.74468 -33.45868 -32.15084 -31.44209 -31.19112 -30.51351 -29.09017 -26.44052 -25.16272 -24.49110 -23.98594 -23.40705 -21.84445 -21.18023 -20.67835 -19.44177 -18.90473 -18.02996 -17.78004 -17.26209 -17.10199 -16.87032 -16.29851 -15.75231 -15.42395 -15.33811 -15.23872 -15.00004 -14.84705 -14.62897 -14.41157 -14.03957 -13.84380 -13.82734 -13.54723 -13.20437 -13.16285 -12.90330 -12.89989 -12.62514 -12.43256 -12.39016 -12.15151 -12.09632 -11.87699 -11.79907 -11.67002 -11.24367 -11.02436 -10.98382 -9.90792 -9.65829 -9.20878 -9.10533 -7.99138 -5.29599 -0.50677 0.35780 0.76059 1.32290 1.47280 1.48291 1.56767 1.87437 1.93741 2.53762 2.72687 3.15962 3.33205 3.47665 3.55129 3.65754 3.81742 3.89300 4.00534 4.10771 4.18888 4.27728 4.29396 4.34037 4.37168 4.40441 4.47150 4.51134 4.60445 4.64017 4.78715 4.87744 4.92874 4.97447 5.01409 5.09750 5.12440 5.18075 5.25330 5.29836 5.35063 5.39891 5.49219 5.49993 5.60912 6.03637 6.22104 6.29599 6.79255 7.29950 7.99597 8.24900 9.23516 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.002628 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.103319 B =10653.132052 C =11614.880125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.075 4.075 4 C -0.160 4.160 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.123 4.123 9 C 0.045 3.955 10 O -0.186 6.186 11 C -0.052 4.052 12 C 0.601 3.399 13 O -0.548 6.548 14 N -0.604 5.604 15 C 0.114 3.886 16 C -0.125 4.125 17 C 0.167 3.833 18 H 0.065 0.935 19 N -0.721 5.721 20 C -0.249 4.249 21 H 0.075 0.925 22 C -0.068 4.068 23 N -0.964 5.964 24 Si 0.971 3.029 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.095 3.905 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.054 0.946 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 0.778 -31.253 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.153 4.153 7 C -0.090 4.090 8 C -0.141 4.141 9 C -0.002 4.002 10 O -0.089 6.089 11 C -0.102 4.102 12 C 0.391 3.609 13 O -0.429 6.429 14 N -0.336 5.336 15 C -0.008 4.008 16 C -0.164 4.164 17 C 0.057 3.943 18 H 0.083 0.917 19 N -0.360 5.360 20 C -0.380 4.380 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.614 5.614 24 Si 0.800 3.200 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.198 1.198 28 C -0.031 4.031 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.212 0.788 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.100 0.243 -30.842 30.862 hybrid contribution -0.199 -0.390 1.600 1.659 sum 0.902 -0.147 -29.242 29.256 Atomic orbital electron populations 1.21592 0.93545 1.02745 1.01202 1.20227 0.96907 0.89040 1.03938 1.21702 0.98607 0.97645 0.89885 1.19982 1.07188 0.93795 0.95133 1.20694 0.97435 1.01069 0.89144 1.21256 0.99749 0.92717 1.01535 1.21520 0.95674 0.98419 0.93339 1.20409 1.04215 0.97841 0.91675 1.20342 1.01545 0.97401 0.80949 1.84071 1.71455 1.31670 1.21704 1.21381 1.09601 0.85453 0.93745 1.16604 0.78244 0.84010 0.82090 1.90812 1.49005 1.20182 1.82945 1.48456 1.63670 1.15120 1.06334 1.22152 1.00368 0.80437 0.97886 1.22891 1.03969 0.97167 0.92350 1.21495 0.95361 0.93732 0.83751 0.91713 1.42401 1.61397 1.31227 1.01023 1.19589 1.25328 1.05444 0.87647 0.90708 1.25535 1.01018 0.99925 0.99604 1.69794 1.42265 1.30764 1.18583 0.85184 0.77159 0.78708 0.78960 1.21048 1.22152 1.19803 1.23104 1.00936 1.00957 0.78103 0.90495 0.95006 0.91614 0.88336 0.90840 0.83464 0.81804 0.81031 0.83106 0.89722 0.90061 0.87832 0.90397 0.78788 0.93821 0.92770 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.90 71.98 0.71 -2.16 16 2 C -0.06 -1.50 5.86 29.85 0.17 -1.32 16 3 C -0.08 -1.99 5.64 -18.35 -0.10 -2.09 16 4 C -0.16 -3.54 6.37 -20.23 -0.13 -3.67 16 5 C -0.07 -0.97 10.06 22.25 0.22 -0.74 16 6 C -0.13 -1.34 9.98 22.04 0.22 -1.12 16 7 C -0.07 -0.71 10.01 22.31 0.22 -0.48 16 8 C -0.12 -1.89 10.07 22.36 0.23 -1.66 16 9 C 0.05 1.04 7.41 23.07 0.17 1.21 16 10 O -0.19 -5.06 8.09 -12.93 -0.10 -5.17 16 11 C -0.05 -1.59 6.90 24.00 0.17 -1.43 16 12 C 0.60 21.40 7.83 86.53 0.68 22.08 16 13 O -0.55 -22.15 14.87 -4.23 -0.06 -22.21 16 14 N -0.60 -20.77 3.33 -816.15 -2.71 -23.49 16 15 C 0.11 3.14 5.53 86.73 0.48 3.62 16 16 C -0.13 -3.73 6.59 31.88 0.21 -3.52 16 17 C 0.17 6.54 3.70 46.49 0.17 6.71 16 18 H 0.06 2.55 8.13 -2.38 -0.02 2.53 16 19 N -0.72 -35.53 5.28 -315.86 -1.67 -37.19 16 20 C -0.25 -13.65 9.98 84.04 0.84 -12.81 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 23 N -0.96 -58.10 13.06 21.65 0.28 -57.82 16 24 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 28 C 0.09 3.74 6.59 86.86 0.57 4.31 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.09 6.38 -2.39 -0.02 2.08 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.08 2.11 7.66 -2.39 -0.02 2.09 16 39 H 0.08 2.06 7.75 -2.39 -0.02 2.04 16 40 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.36 8.01 -2.39 -0.02 2.34 16 42 H 0.38 19.76 7.72 -92.70 -0.72 19.05 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.36 8.03 -2.39 -0.02 2.34 16 Total: -1.00 -70.61 374.31 3.35 -67.25 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.29 Total: 27.00 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.30 Total: 3.51 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -4.10 Total: -118.50 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.17 Total: -27.38 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.61 3.35 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970834920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.118 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds