Wall clock time and date at job start Tue Mar 31 2020 15:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46756 * 209.99724 * 10 8 6 13 13 H 1.48496 * 109.46957 * 329.99498 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21571 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.47705 * 119.99625 * 179.97438 * 18 17 15 21 21 C 1.40097 * 120.02639 * 359.97438 * 20 18 17 22 22 C 1.36437 * 120.68492 * 180.02562 * 21 20 18 23 23 C 1.39157 * 120.27601 * 359.97438 * 22 21 20 24 24 O 1.34746 * 133.25508 * 179.97438 * 23 22 21 25 25 C 1.34438 * 110.95571 * 180.02562 * 24 23 22 26 26 C 1.33959 * 110.20038 * 359.97438 * 25 24 23 27 27 C 1.40681 * 119.54016 * 0.02562 * 23 22 21 28 28 C 1.39079 * 120.20351 * 359.72678 * 27 23 22 29 29 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 30 30 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 31 31 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 32 32 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 33 33 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 34 34 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 35 35 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 36 36 H 1.08995 * 110.46379 * 199.95295 * 4 2 1 37 37 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 39 39 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 40 40 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 41 41 H 1.08000 * 119.65856 * 359.97438 * 21 20 18 42 42 H 1.08001 * 119.85835 * 179.97438 * 22 21 20 43 43 H 1.08005 * 124.90164 * 180.02562 * 25 24 23 44 44 H 1.07999 * 126.92512 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.33018 * 180.29861 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.3787 -6.3777 2.5065 12 1 2.4446 -7.2265 1.5620 13 1 2.5070 -5.7502 3.4848 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2700 -1.0634 -3.6115 20 6 5.3573 -0.1892 -3.0332 21 6 6.1591 0.3625 -2.0255 22 6 7.4462 0.7334 -2.2847 23 6 7.9812 0.5673 -3.5585 24 8 9.1879 0.8347 -4.0953 25 6 9.2232 0.4904 -5.3944 26 6 8.0427 -0.0192 -5.7701 27 6 7.1854 0.0143 -4.5783 28 6 5.8750 -0.3687 -4.3133 29 1 -0.3633 0.4756 0.9109 30 1 -0.3632 0.5511 -0.8675 31 1 -0.3633 -1.0267 -0.0436 32 1 3.1643 1.4028 -0.0434 33 1 1.6902 1.9654 -0.8674 34 1 1.7606 1.9384 0.9110 35 1 1.4671 -0.6454 2.0839 36 1 3.1180 -0.5234 1.4046 37 1 1.8431 -5.6491 -0.5972 38 1 2.9064 -2.8120 -1.0390 39 1 1.1219 -2.7484 -1.0589 40 1 4.0218 -0.0349 -0.7978 41 1 5.7539 0.4964 -1.0334 42 1 8.0523 1.1578 -1.4980 43 1 10.0801 0.6069 -6.0415 44 1 7.7750 -0.3805 -6.7520 45 1 5.2638 -0.7978 -5.0934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974615015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:21 Heat of formation + Delta-G solvation = 25.217876 kcal Electronic energy + Delta-G solvation = -28000.016306 eV Core-core repulsion = 24177.849542 eV Total energy + Delta-G solvation = -3822.166764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63955 -39.98525 -38.36735 -37.08726 -33.93256 -33.25390 -32.81668 -30.78643 -30.63139 -29.60331 -27.99647 -26.80326 -25.62400 -24.43257 -23.05181 -22.84610 -21.53087 -20.64371 -19.94004 -18.86648 -17.88107 -17.48306 -16.68688 -16.67050 -16.31326 -15.76729 -14.85773 -14.71826 -14.33751 -14.20212 -14.02506 -13.86553 -13.63107 -13.37610 -13.26691 -12.94357 -12.84786 -12.46381 -12.28778 -11.99447 -11.95514 -11.66068 -11.36588 -11.13526 -11.06887 -10.97228 -10.77053 -10.46169 -10.38127 -10.23529 -10.00569 -9.86636 -9.63021 -9.59634 -8.81731 -8.61627 -8.48449 -8.38639 -6.80862 -5.67129 -3.02001 0.74017 0.82642 2.15398 2.54321 2.98883 3.41704 3.46020 3.47349 3.49048 3.86911 4.24869 4.43305 4.51723 4.80943 4.82233 4.93992 5.03475 5.12352 5.16770 5.28885 5.31645 5.38868 5.55202 5.64689 5.66289 5.82186 5.92229 5.98193 5.99210 6.03809 6.13721 6.16780 6.17410 6.22716 6.26093 6.34790 6.41528 6.59261 6.61585 6.68202 6.74093 6.90460 6.96317 7.57424 7.65908 7.83537 7.93563 8.27739 8.58652 9.23965 9.84779 10.50077 11.43433 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003262 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.137999 B = 8580.591797 C = 9553.569657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.091 0.909 17 N -0.703 5.703 18 C 0.559 3.441 19 O -0.538 6.538 20 C -0.142 4.142 21 C -0.060 4.060 22 C -0.112 4.112 23 C 0.068 3.932 24 O -0.195 6.195 25 C 0.000 4.000 26 C -0.200 4.200 27 C -0.144 4.144 28 C -0.006 4.006 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.252 0.748 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.394 0.606 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.209 0.791 44 H 0.160 0.840 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.920 15.293 -7.194 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.109 0.891 17 N -0.354 5.354 18 C 0.345 3.655 19 O -0.416 6.416 20 C -0.145 4.145 21 C -0.079 4.079 22 C -0.131 4.131 23 C 0.020 3.980 24 O -0.096 6.096 25 C -0.064 4.064 26 C -0.219 4.219 27 C -0.145 4.145 28 C -0.025 4.025 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.231 0.769 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.225 0.775 44 H 0.178 0.822 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.599 14.807 -7.666 19.757 hybrid contribution 0.308 -0.852 0.740 1.170 sum 10.907 13.955 -6.926 19.018 Atomic orbital electron populations 1.21590 0.93252 1.02869 1.00574 1.22020 0.96406 0.94117 0.96591 1.21680 1.00181 0.95610 1.01398 1.21628 0.96520 0.85813 0.94336 1.44435 1.86953 0.99681 1.01812 1.19012 1.43966 0.83971 0.88868 0.90502 1.24809 1.02220 0.97372 0.95945 1.69962 1.56579 1.20791 1.09150 0.86146 0.77566 0.82682 0.79502 1.21643 1.21751 1.20789 1.21534 1.01695 0.88481 0.83370 1.22515 0.80818 0.97551 0.97235 0.89120 1.45921 1.14967 1.63702 1.10790 1.17979 0.86083 0.78558 0.82835 1.90774 1.60136 1.44482 1.46236 1.19918 0.95128 1.04922 0.94545 1.20811 0.92485 0.95694 0.98922 1.19538 0.95625 1.05023 0.92879 1.19844 0.83552 0.99464 0.95118 1.83986 1.32038 1.69620 1.23940 1.23943 1.00027 1.00215 0.82234 1.22561 0.93312 1.06931 0.99127 1.19901 0.95512 1.05085 0.93993 1.20680 0.92238 0.93505 0.96073 0.92818 0.93368 0.91244 0.93161 0.92809 0.92615 0.94080 0.96803 0.93706 0.93345 0.92740 0.76935 0.84386 0.84504 0.77497 0.82195 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.61 37.16 0.32 -1.66 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.66 8.35 37.16 0.31 -1.35 16 4 C 0.14 2.79 6.12 -2.53 -0.02 2.77 16 5 N -0.60 -14.89 3.38 -170.07 -0.58 -15.47 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 7 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.37 10.31 55.49 0.57 -26.79 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.17 4.28 4.73 -3.06 -0.01 4.26 16 15 C 0.12 2.35 2.59 -66.10 -0.17 2.17 16 16 H 0.09 1.80 7.45 -51.93 -0.39 1.41 16 17 N -0.70 -11.76 4.36 -53.01 -0.23 -11.99 16 18 C 0.56 9.90 7.77 -12.39 -0.10 9.81 16 19 O -0.54 -11.45 15.98 5.30 0.08 -11.37 16 20 C -0.14 -2.08 5.87 -104.96 -0.62 -2.70 16 21 C -0.06 -0.72 9.46 -39.53 -0.37 -1.09 16 22 C -0.11 -1.24 9.99 -39.89 -0.40 -1.64 16 23 C 0.07 0.83 7.42 -38.32 -0.28 0.55 16 24 O -0.19 -2.14 10.57 4.12 0.04 -2.09 16 25 C 0.00 0.00 11.95 29.23 0.35 0.35 16 26 C -0.20 -1.94 11.14 -37.61 -0.42 -2.36 16 27 C -0.14 -1.82 6.39 -105.18 -0.67 -2.49 16 28 C -0.01 -0.08 9.64 -38.90 -0.38 -0.46 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.30 7.81 -51.93 -0.41 0.89 16 32 H 0.05 0.58 6.27 -51.93 -0.33 0.26 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 36 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 1.37 7.41 -51.93 -0.38 0.98 16 39 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 40 H 0.39 5.64 5.06 -40.82 -0.21 5.43 16 41 H 0.14 1.35 6.37 -52.49 -0.33 1.02 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.21 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.14 2.01 7.65 -52.49 -0.40 1.61 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -33.89 366.50 -8.61 -42.50 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.17 Total: 4.65 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.83 Total: -2.19 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.23 Total: -54.25 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.13 Total: -13.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.89 -8.61 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974615015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.717 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds