Wall clock time and date at job start Tue Mar 31 2020 15:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46756 * 209.99724 * 10 8 6 13 13 H 1.48496 * 109.46957 * 329.99498 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21571 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.47705 * 119.99625 * 179.97438 * 18 17 15 21 21 C 1.40097 * 120.02639 * 359.97438 * 20 18 17 22 22 C 1.36437 * 120.68492 * 180.02562 * 21 20 18 23 23 C 1.39157 * 120.27601 * 359.97438 * 22 21 20 24 24 O 1.34746 * 133.25508 * 179.97438 * 23 22 21 25 25 C 1.34438 * 110.95571 * 180.02562 * 24 23 22 26 26 C 1.33959 * 110.20038 * 359.97438 * 25 24 23 27 27 C 1.40681 * 119.54016 * 0.02562 * 23 22 21 28 28 C 1.39079 * 120.20351 * 359.72678 * 27 23 22 29 29 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 30 30 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 31 31 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 32 32 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 33 33 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 34 34 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 35 35 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 36 36 H 1.08995 * 110.46379 * 199.95295 * 4 2 1 37 37 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 39 39 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 40 40 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 41 41 H 1.08000 * 119.65856 * 359.97438 * 21 20 18 42 42 H 1.08001 * 119.85835 * 179.97438 * 22 21 20 43 43 H 1.08005 * 124.90164 * 180.02562 * 25 24 23 44 44 H 1.07999 * 126.92512 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.33018 * 180.29861 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.3787 -6.3777 2.5065 12 1 2.4446 -7.2265 1.5620 13 1 2.5070 -5.7502 3.4848 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2700 -1.0634 -3.6115 20 6 5.3573 -0.1892 -3.0332 21 6 6.1591 0.3625 -2.0255 22 6 7.4462 0.7334 -2.2847 23 6 7.9812 0.5673 -3.5585 24 8 9.1879 0.8347 -4.0953 25 6 9.2232 0.4904 -5.3944 26 6 8.0427 -0.0192 -5.7701 27 6 7.1854 0.0143 -4.5783 28 6 5.8750 -0.3687 -4.3133 29 1 -0.3633 0.4756 0.9109 30 1 -0.3632 0.5511 -0.8675 31 1 -0.3633 -1.0267 -0.0436 32 1 3.1643 1.4028 -0.0434 33 1 1.6902 1.9654 -0.8674 34 1 1.7606 1.9384 0.9110 35 1 1.4671 -0.6454 2.0839 36 1 3.1180 -0.5234 1.4046 37 1 1.8431 -5.6491 -0.5972 38 1 2.9064 -2.8120 -1.0390 39 1 1.1219 -2.7484 -1.0589 40 1 4.0218 -0.0349 -0.7978 41 1 5.7539 0.4964 -1.0334 42 1 8.0523 1.1578 -1.4980 43 1 10.0801 0.6069 -6.0415 44 1 7.7750 -0.3805 -6.7520 45 1 5.2638 -0.7978 -5.0934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974615015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:20 Heat of formation + Delta-G solvation = 3.694483 kcal Electronic energy + Delta-G solvation = -28000.949630 eV Core-core repulsion = 24177.849542 eV Total energy + Delta-G solvation = -3823.100088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46727 -41.41491 -39.75692 -38.28276 -35.72810 -34.64608 -33.79727 -32.59903 -31.79013 -30.53658 -29.58175 -28.05248 -27.40529 -25.78157 -24.53675 -23.75399 -22.36003 -22.25641 -21.48115 -20.26968 -18.97373 -18.68171 -18.41495 -17.74272 -17.14920 -17.12576 -16.72183 -16.06095 -15.81414 -15.58843 -15.31541 -15.22531 -14.93778 -14.70522 -14.20085 -14.07392 -13.83390 -13.77524 -13.61233 -13.44523 -13.22913 -13.12829 -12.95896 -12.80388 -12.69440 -12.56268 -12.11354 -12.06228 -11.84849 -11.73279 -11.52533 -11.30749 -11.28590 -11.08970 -10.73011 -10.09915 -9.69363 -9.30302 -8.87777 -7.82379 -5.18902 -0.28181 -0.07328 1.40198 1.44474 1.46705 1.55285 1.77244 1.77471 2.12000 2.49989 2.73841 3.36009 3.43882 3.50167 3.60355 3.66414 3.76174 3.97705 3.98318 4.07005 4.16141 4.21986 4.39332 4.41360 4.52511 4.61547 4.70375 4.84438 4.86666 4.90160 4.97256 5.04363 5.07131 5.10005 5.14839 5.18619 5.20134 5.29785 5.36618 5.38867 5.44268 5.47810 5.57459 5.71989 5.75138 6.07554 6.18589 6.53864 7.08898 7.20730 7.79198 8.43487 9.26819 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003262 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.137999 B = 8580.591797 C = 9553.569657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.234 4.234 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.977 3.023 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.264 1.264 14 C 0.193 3.807 15 C 0.136 3.864 16 H 0.079 0.921 17 N -0.691 5.691 18 C 0.556 3.444 19 O -0.585 6.585 20 C -0.159 4.159 21 C -0.062 4.062 22 C -0.102 4.102 23 C 0.056 3.944 24 O -0.199 6.199 25 C 0.022 3.978 26 C -0.224 4.224 27 C -0.160 4.160 28 C -0.024 4.024 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.242 0.758 38 H -0.001 1.001 39 H 0.006 0.994 40 H 0.409 0.591 41 H 0.161 0.839 42 H 0.171 0.829 43 H 0.258 0.742 44 H 0.178 0.822 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.254 18.259 -5.707 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.106 0.894 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.806 3.194 11 H -0.214 1.214 12 H -0.228 1.228 13 H -0.189 1.189 14 C 0.066 3.934 15 C 0.030 3.970 16 H 0.097 0.903 17 N -0.343 5.343 18 C 0.344 3.656 19 O -0.467 6.467 20 C -0.163 4.163 21 C -0.080 4.080 22 C -0.120 4.120 23 C 0.008 3.992 24 O -0.100 6.100 25 C -0.042 4.042 26 C -0.242 4.242 27 C -0.161 4.161 28 C -0.043 4.043 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.018 0.982 39 H 0.024 0.976 40 H 0.248 0.752 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.273 0.727 44 H 0.196 0.804 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.958 17.836 -6.124 22.881 hybrid contribution -0.329 -1.743 0.219 1.787 sum 12.630 16.093 -5.905 21.293 Atomic orbital electron populations 1.21592 0.92854 1.00935 1.02743 1.21995 0.96691 0.95891 0.92986 1.21665 1.00992 0.92350 1.03215 1.21917 0.97858 0.83183 0.95798 1.44674 1.86622 1.01640 1.01625 1.19479 1.42082 0.84969 0.89789 0.89384 1.25680 1.03044 1.00406 0.97247 1.70241 1.58562 1.20391 1.11135 0.85089 0.77451 0.78784 0.78092 1.21400 1.22774 1.18885 1.21085 0.97148 0.91345 0.83809 1.22117 0.82285 0.94755 0.97820 0.90340 1.45714 1.14212 1.63243 1.11089 1.18547 0.87161 0.77433 0.82410 1.90740 1.61671 1.46637 1.47647 1.19738 0.93664 1.07048 0.95818 1.20982 0.92683 0.95322 0.99025 1.19886 0.95268 1.03541 0.93297 1.20139 0.84029 0.99455 0.95552 1.84016 1.31233 1.69500 1.25202 1.24887 1.00745 0.97290 0.81258 1.22893 0.93534 1.08509 0.99312 1.20205 0.95075 1.04936 0.95896 1.20655 0.93225 0.94574 0.95842 0.90410 0.91435 0.95221 0.91776 0.91731 0.90146 0.93172 0.94844 0.94863 0.98244 0.97581 0.75173 0.82145 0.81202 0.72670 0.80413 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.61 71.98 0.62 -3.16 16 2 C -0.07 -2.32 0.83 -50.79 -0.04 -2.36 16 3 C -0.12 -2.67 8.35 71.98 0.60 -2.07 16 4 C 0.14 5.13 6.12 86.86 0.53 5.66 16 5 N -0.62 -31.35 3.38 -691.97 -2.34 -33.69 16 6 C -0.23 -13.08 10.28 84.03 0.86 -12.22 16 7 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 8 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 9 N -0.95 -60.45 10.31 21.65 0.22 -60.23 16 10 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.19 10.05 4.73 86.73 0.41 10.46 16 15 C 0.14 5.33 2.59 46.18 0.12 5.45 16 16 H 0.08 3.29 7.45 -2.38 -0.02 3.27 16 17 N -0.69 -23.32 4.36 -439.91 -1.92 -25.24 16 18 C 0.56 20.60 7.77 86.75 0.67 21.28 16 19 O -0.59 -26.85 15.98 -3.94 -0.06 -26.91 16 20 C -0.16 -4.78 5.87 -20.08 -0.12 -4.89 16 21 C -0.06 -1.37 9.46 22.30 0.21 -1.16 16 22 C -0.10 -1.99 9.99 22.07 0.22 -1.77 16 23 C 0.06 1.27 7.42 23.09 0.17 1.44 16 24 O -0.20 -3.76 10.57 -8.19 -0.09 -3.85 16 25 C 0.02 0.29 11.95 66.85 0.80 1.08 16 26 C -0.22 -3.97 11.14 23.55 0.26 -3.71 16 27 C -0.16 -3.99 6.39 -20.23 -0.13 -4.12 16 28 C -0.02 -0.70 9.64 22.71 0.22 -0.48 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 1.12 7.81 -2.39 -0.02 1.10 16 32 H 0.06 1.21 6.27 -2.39 -0.02 1.20 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 36 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 37 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.00 -0.04 7.41 -2.39 -0.02 -0.06 16 39 H 0.01 0.37 7.38 -2.39 -0.02 0.35 16 40 H 0.41 11.09 5.06 -92.70 -0.47 10.62 16 41 H 0.16 2.70 6.37 -2.91 -0.02 2.68 16 42 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.26 0.54 8.06 -2.91 -0.02 0.51 16 44 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.13 3.99 7.65 -2.91 -0.02 3.97 16 Total: -1.00 -81.09 366.50 4.26 -76.83 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.54 Total: 18.38 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.88 Total: 5.74 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -4.04 Total: -119.16 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.15 Total: -30.76 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -81.09 4.26 -76.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974615015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.523 kcal (2) G-P(sol) polarization free energy of solvation -81.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds