Wall clock time and date at job start Tue Mar 31 2020 15:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46756 * 209.99724 * 10 8 6 13 13 H 1.48496 * 109.46957 * 329.99498 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21652 * 120.00091 * 359.97438 * 18 17 15 20 20 C 1.46983 * 119.99599 * 180.02562 * 18 17 15 21 21 C 1.35809 * 125.12567 * 180.02562 * 20 18 17 22 22 C 1.46247 * 106.07691 * 179.97438 * 21 20 18 23 23 C 1.39703 * 134.19396 * 179.97438 * 22 21 20 24 24 C 1.36623 * 119.71463 * 179.97438 * 23 22 21 25 25 C 1.38839 * 120.44047 * 0.03867 * 24 23 22 26 26 C 1.37790 * 120.74541 * 359.97438 * 25 24 23 27 27 C 1.39031 * 119.85600 * 0.02562 * 26 25 24 28 28 O 1.34716 * 133.24250 * 180.29709 * 27 26 25 29 29 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 30 30 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 31 31 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 32 32 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 33 33 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 34 34 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 35 35 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 36 36 H 1.08997 * 110.36790 * 199.90563 * 4 2 1 37 37 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 39 39 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 40 40 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 41 41 H 1.08002 * 126.96484 * 359.93843 * 21 20 18 42 42 H 1.08004 * 120.14507 * 0.02562 * 23 22 21 43 43 H 1.07996 * 119.77855 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.62260 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.07582 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.3787 -6.3777 2.5065 12 1 2.4446 -7.2265 1.5620 13 1 2.5070 -5.7502 3.4848 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2695 -1.0637 -3.6121 20 6 5.3508 -0.1921 -3.0314 21 6 5.9575 -0.3150 -4.2403 22 6 7.3159 0.1978 -4.0656 23 6 8.4182 0.3433 -4.9116 24 6 9.5794 0.8744 -4.4256 25 6 9.6707 1.2691 -3.0976 26 6 8.5952 1.1337 -2.2469 27 6 7.4031 0.5959 -2.7187 28 8 6.2099 0.3503 -2.1434 29 1 -0.3633 0.4756 0.9109 30 1 -0.3632 0.5511 -0.8675 31 1 -0.3633 -1.0267 -0.0436 32 1 3.1643 1.4028 -0.0434 33 1 1.6902 1.9654 -0.8674 34 1 1.7606 1.9384 0.9110 35 1 1.4671 -0.6454 2.0839 36 1 3.1182 -0.5228 1.4027 37 1 1.8431 -5.6491 -0.5972 38 1 2.9064 -2.8120 -1.0390 39 1 1.1219 -2.7484 -1.0589 40 1 4.0218 -0.0349 -0.7978 41 1 5.5246 -0.7115 -5.1468 42 1 8.3524 0.0381 -5.9455 43 1 10.4319 0.9878 -5.0787 44 1 10.5949 1.6877 -2.7275 45 1 8.6781 1.4446 -1.2160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977555731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:14 Heat of formation + Delta-G solvation = 23.331181 kcal Electronic energy + Delta-G solvation = -28005.016238 eV Core-core repulsion = 24182.767661 eV Total energy + Delta-G solvation = -3822.248577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58220 -39.77875 -38.17760 -37.78591 -33.96428 -33.13939 -32.87219 -30.71887 -30.62476 -29.84823 -28.08825 -26.85533 -25.64135 -24.55069 -23.15933 -22.75956 -21.69717 -20.63422 -20.03698 -18.97218 -17.94016 -17.58232 -16.70391 -16.42902 -16.30737 -15.76786 -15.08789 -14.74701 -14.34774 -14.21263 -14.03975 -13.91589 -13.75513 -13.35197 -13.27624 -13.11336 -12.54138 -12.48249 -12.18822 -12.08878 -12.01072 -11.68895 -11.40609 -11.20076 -11.09773 -11.00119 -10.78060 -10.44654 -10.35666 -10.29760 -10.05105 -9.98150 -9.88544 -9.64473 -8.87328 -8.68748 -8.59070 -8.34674 -6.82867 -5.68966 -3.03627 0.46491 1.13424 1.78526 2.40195 3.28018 3.37650 3.41231 3.45980 3.48400 3.49138 4.34869 4.46512 4.51085 4.68515 4.87831 4.91231 5.00450 5.06956 5.20458 5.26748 5.29404 5.42778 5.53921 5.61447 5.62570 5.78804 5.90833 5.93164 6.00980 6.01365 6.14610 6.16313 6.17474 6.18732 6.22936 6.34426 6.37451 6.54118 6.59223 6.62682 6.66426 6.87071 6.93194 7.53013 7.59897 7.73884 7.84832 8.24860 8.33102 9.22152 9.82930 10.48023 11.41960 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003292 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.651833 B = 8502.639037 C = 9362.001523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.120 3.880 16 H 0.094 0.906 17 N -0.692 5.692 18 C 0.594 3.406 19 O -0.515 6.515 20 C -0.010 4.010 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.062 4.062 24 C -0.141 4.141 25 C -0.088 4.088 26 C -0.109 4.109 27 C 0.067 3.933 28 O -0.183 6.183 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.016 0.984 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.402 0.598 41 H 0.170 0.830 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 15.610 -6.527 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.190 4.190 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.049 3.951 15 C 0.016 3.984 16 H 0.112 0.888 17 N -0.342 5.342 18 C 0.379 3.621 19 O -0.392 6.392 20 C -0.060 4.060 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.159 4.159 25 C -0.107 4.107 26 C -0.128 4.128 27 C 0.019 3.981 28 O -0.084 6.084 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.238 0.762 41 H 0.188 0.812 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.786 15.063 -6.859 19.755 hybrid contribution 0.374 -0.797 0.813 1.198 sum 11.160 14.266 -6.046 19.095 Atomic orbital electron populations 1.21593 0.93096 1.02919 1.00666 1.22023 0.96474 0.94145 0.96405 1.21694 1.00345 0.95528 1.01459 1.21647 0.96638 0.85731 0.94352 1.44429 1.86991 0.99734 1.01733 1.19022 1.43930 0.83944 0.88890 0.90445 1.24809 1.02187 0.97385 0.95975 1.69949 1.56645 1.20835 1.09174 0.86132 0.77575 0.82614 0.79495 1.21613 1.21733 1.20777 1.21544 1.01820 0.88160 0.83556 1.22633 0.80240 0.97923 0.97594 0.88812 1.45977 1.15323 1.62420 1.10466 1.16614 0.82765 0.79127 0.83628 1.90887 1.57258 1.44600 1.46481 1.22264 0.91766 1.02923 0.89056 1.22714 0.91756 1.01692 0.98290 1.19958 0.95144 1.04717 0.94378 1.20371 0.91029 0.97317 0.99252 1.20783 0.97997 1.01199 0.95956 1.20978 0.97637 0.98740 0.93300 1.20009 0.89009 1.02584 1.01155 1.19782 0.86383 1.00366 0.91585 1.84043 1.19503 1.66510 1.38393 0.92724 0.93317 0.91186 0.93028 0.92801 0.92506 0.93932 0.96677 0.93676 0.93323 0.92465 0.76159 0.81221 0.85222 0.85233 0.84680 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.61 37.16 0.32 -1.65 16 2 C -0.09 -1.47 0.83 -152.36 -0.13 -1.60 16 3 C -0.13 -1.75 8.35 37.16 0.31 -1.44 16 4 C 0.14 2.82 6.12 -2.53 -0.02 2.81 16 5 N -0.60 -14.99 3.38 -170.07 -0.58 -15.57 16 6 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.17 4.27 4.73 -3.06 -0.01 4.26 16 15 C 0.12 2.29 2.59 -66.10 -0.17 2.12 16 16 H 0.09 1.81 7.45 -51.93 -0.39 1.43 16 17 N -0.69 -12.07 4.41 -53.24 -0.23 -12.31 16 18 C 0.59 10.76 7.79 -12.72 -0.10 10.66 16 19 O -0.51 -10.71 16.47 5.23 0.09 -10.62 16 20 C -0.01 -0.16 7.07 -36.91 -0.26 -0.42 16 21 C -0.12 -1.75 10.81 -37.24 -0.40 -2.15 16 22 C -0.14 -1.81 6.38 -105.19 -0.67 -2.48 16 23 C -0.06 -0.61 10.06 -39.62 -0.40 -1.01 16 24 C -0.14 -1.16 9.98 -39.94 -0.40 -1.56 16 25 C -0.09 -0.72 10.01 -39.52 -0.40 -1.12 16 26 C -0.11 -1.12 10.07 -39.45 -0.40 -1.51 16 27 C 0.07 0.89 7.41 -38.35 -0.28 0.61 16 28 O -0.18 -2.73 10.28 2.79 0.03 -2.70 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.30 7.81 -51.93 -0.41 0.89 16 32 H 0.05 0.66 6.27 -51.93 -0.33 0.33 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 36 H 0.02 0.30 8.04 -51.93 -0.42 -0.12 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.05 1.37 7.41 -51.93 -0.38 0.99 16 39 H 0.06 1.57 7.38 -51.93 -0.38 1.18 16 40 H 0.40 6.42 6.77 -40.82 -0.28 6.14 16 41 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -32.43 370.47 -9.17 -41.60 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.35 Total: 4.81 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.26 Total: -1.27 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.24 Total: -54.64 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.11 Total: -13.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.43 -9.17 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977555731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.927 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds