Wall clock time and date at job start Tue Mar 31 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.88908 * 2 1 4 4 C 1.54912 * 111.00325 * 123.88080 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47341 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46756 * 209.99724 * 10 8 6 13 13 H 1.48496 * 109.46957 * 329.99498 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21652 * 120.00091 * 359.97438 * 18 17 15 20 20 C 1.46983 * 119.99599 * 180.02562 * 18 17 15 21 21 C 1.35809 * 125.12567 * 180.02562 * 20 18 17 22 22 C 1.46247 * 106.07691 * 179.97438 * 21 20 18 23 23 C 1.39703 * 134.19396 * 179.97438 * 22 21 20 24 24 C 1.36623 * 119.71463 * 179.97438 * 23 22 21 25 25 C 1.38839 * 120.44047 * 0.03867 * 24 23 22 26 26 C 1.37790 * 120.74541 * 359.97438 * 25 24 23 27 27 C 1.39031 * 119.85600 * 0.02562 * 26 25 24 28 28 O 1.34716 * 133.24250 * 180.29709 * 27 26 25 29 29 H 1.08994 * 109.46864 * 297.56904 * 1 2 3 30 30 H 1.09000 * 109.46578 * 57.57453 * 1 2 3 31 31 H 1.08996 * 109.46833 * 177.57093 * 1 2 3 32 32 H 1.08992 * 109.47271 * 182.42178 * 3 2 1 33 33 H 1.09003 * 109.47056 * 302.43060 * 3 2 1 34 34 H 1.09006 * 109.46578 * 62.42421 * 3 2 1 35 35 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 36 36 H 1.08997 * 110.36790 * 199.90563 * 4 2 1 37 37 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 39 39 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 40 40 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 41 41 H 1.08002 * 126.96484 * 359.93843 * 21 20 18 42 42 H 1.08004 * 120.14507 * 0.02562 * 23 22 21 43 43 H 1.07996 * 119.77855 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.62260 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.07582 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0139 -2.2156 0.7742 6 6 1.9504 -3.2997 1.6085 7 1 1.9505 -3.1578 2.6792 8 6 1.8872 -4.5809 1.0781 9 7 1.8877 -4.7538 -0.2267 10 14 1.7999 -6.0596 2.2162 11 1 0.3787 -6.3777 2.5065 12 1 2.4446 -7.2265 1.5620 13 1 2.5070 -5.7502 3.4848 14 6 2.0286 -2.2650 -0.6952 15 6 2.0862 -0.8084 -1.2019 16 1 1.4542 -0.6775 -2.0803 17 7 3.4668 -0.4162 -1.4960 18 6 3.9655 -0.5851 -2.7366 19 8 3.2695 -1.0637 -3.6121 20 6 5.3508 -0.1921 -3.0314 21 6 5.9575 -0.3150 -4.2403 22 6 7.3159 0.1978 -4.0656 23 6 8.4182 0.3433 -4.9116 24 6 9.5794 0.8744 -4.4256 25 6 9.6707 1.2691 -3.0976 26 6 8.5952 1.1337 -2.2469 27 6 7.4031 0.5959 -2.7187 28 8 6.2099 0.3503 -2.1434 29 1 -0.3633 0.4756 0.9109 30 1 -0.3632 0.5511 -0.8675 31 1 -0.3633 -1.0267 -0.0436 32 1 3.1643 1.4028 -0.0434 33 1 1.6902 1.9654 -0.8674 34 1 1.7606 1.9384 0.9110 35 1 1.4671 -0.6454 2.0839 36 1 3.1182 -0.5228 1.4027 37 1 1.8431 -5.6491 -0.5972 38 1 2.9064 -2.8120 -1.0390 39 1 1.1219 -2.7484 -1.0589 40 1 4.0218 -0.0349 -0.7978 41 1 5.5246 -0.7115 -5.1468 42 1 8.3524 0.0381 -5.9455 43 1 10.4319 0.9878 -5.0787 44 1 10.5949 1.6877 -2.7275 45 1 8.6781 1.4446 -1.2160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977555731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:13 Heat of formation + Delta-G solvation = 3.408986 kcal Electronic energy + Delta-G solvation = -28005.880129 eV Core-core repulsion = 24182.767661 eV Total energy + Delta-G solvation = -3823.112468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.58341 -41.27804 -39.53975 -38.78615 -35.78059 -34.65367 -33.88360 -32.63127 -31.44864 -30.93656 -29.67394 -28.10016 -27.45386 -25.90395 -24.57849 -23.69895 -22.71799 -22.16548 -21.59662 -20.37595 -19.21728 -18.71792 -18.47555 -17.56215 -17.47852 -16.95570 -16.72030 -16.12547 -15.81559 -15.57732 -15.46453 -15.20390 -14.97121 -14.80596 -14.20969 -14.19797 -14.01018 -13.82320 -13.48466 -13.27943 -13.18169 -13.00907 -12.90144 -12.84068 -12.70996 -12.60785 -12.14049 -11.94839 -11.90705 -11.81098 -11.59266 -11.48497 -11.35450 -11.32150 -10.76202 -10.20595 -9.68749 -9.31677 -8.90980 -7.84810 -5.21449 -0.51317 0.33649 0.76934 1.32932 1.43479 1.45870 1.54389 1.94678 2.06326 2.48290 2.71357 3.30139 3.34032 3.45788 3.57949 3.69066 3.89327 3.92351 3.96841 4.03909 4.15816 4.30808 4.35466 4.46091 4.47040 4.55062 4.64303 4.79773 4.80903 4.86140 4.92077 4.98620 5.07179 5.08940 5.14653 5.20713 5.25211 5.31806 5.35743 5.43934 5.46784 5.51621 5.53624 5.65449 5.69872 5.99351 6.15906 6.34900 6.90415 7.07183 7.75946 8.40356 9.24690 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003292 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.651833 B = 8502.639037 C = 9362.001523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.087 0.913 8 C -0.070 4.070 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.285 1.285 12 H -0.299 1.299 13 H -0.266 1.266 14 C 0.192 3.808 15 C 0.133 3.867 16 H 0.089 0.911 17 N -0.686 5.686 18 C 0.595 3.405 19 O -0.553 6.553 20 C -0.043 4.043 21 C -0.112 4.112 22 C -0.166 4.166 23 C -0.067 4.067 24 C -0.134 4.134 25 C -0.071 4.071 26 C -0.124 4.124 27 C 0.043 3.957 28 O -0.194 6.194 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.244 0.756 38 H -0.001 1.001 39 H 0.014 0.986 40 H 0.411 0.589 41 H 0.176 0.824 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.175 0.825 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.940 18.378 -5.867 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.212 1.212 12 H -0.226 1.226 13 H -0.191 1.191 14 C 0.065 3.935 15 C 0.028 3.972 16 H 0.107 0.893 17 N -0.335 5.335 18 C 0.381 3.619 19 O -0.433 6.433 20 C -0.093 4.093 21 C -0.133 4.133 22 C -0.166 4.166 23 C -0.085 4.085 24 C -0.152 4.152 25 C -0.089 4.089 26 C -0.143 4.143 27 C -0.004 4.004 28 O -0.097 6.097 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.032 0.968 40 H 0.248 0.752 41 H 0.194 0.806 42 H 0.168 0.832 43 H 0.184 0.816 44 H 0.192 0.808 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.342 17.887 -6.156 23.149 hybrid contribution -0.209 -1.588 0.563 1.698 sum 13.133 16.299 -5.593 21.666 Atomic orbital electron populations 1.21586 0.92263 1.01201 1.02930 1.21998 0.97038 0.95611 0.92846 1.21661 1.00536 0.92684 1.03378 1.21900 0.97520 0.83365 0.96008 1.44675 1.86662 1.01566 1.01695 1.19476 1.42377 0.84992 0.89762 0.89494 1.25686 1.02856 1.00367 0.97335 1.70220 1.58399 1.20529 1.11092 0.85070 0.77543 0.78687 0.77991 1.21177 1.22632 1.19089 1.21110 0.97500 0.91023 0.83826 1.22282 0.81449 0.95092 0.98391 0.89254 1.45817 1.14760 1.62215 1.10740 1.16900 0.83632 0.78148 0.83206 1.90847 1.58706 1.46311 1.47467 1.21730 0.91269 1.06160 0.90098 1.22992 0.92666 0.99854 0.97805 1.20155 0.95271 1.06107 0.95108 1.20752 0.90662 0.97100 1.00016 1.21289 0.98232 0.99122 0.96515 1.21539 0.98063 0.96353 0.92936 1.20431 0.88414 1.02787 1.02622 1.20370 0.86573 1.01350 0.92139 1.83968 1.20233 1.67048 1.38437 0.90391 0.91106 0.94886 0.92622 0.91420 0.90066 0.92936 0.95642 0.94713 0.98232 0.96766 0.75159 0.80622 0.83184 0.81570 0.80810 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 8.61 71.98 0.62 -3.11 16 2 C -0.07 -2.38 0.83 -50.79 -0.04 -2.42 16 3 C -0.12 -2.95 8.35 71.98 0.60 -2.35 16 4 C 0.14 5.35 6.12 86.86 0.53 5.89 16 5 N -0.62 -31.97 3.38 -691.96 -2.34 -34.31 16 6 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 7 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 8 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 9 N -0.95 -60.27 10.31 21.65 0.22 -60.05 16 10 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.19 10.06 4.73 86.73 0.41 10.47 16 15 C 0.13 5.29 2.59 46.18 0.12 5.41 16 16 H 0.09 3.65 7.45 -2.38 -0.02 3.63 16 17 N -0.69 -24.91 4.41 -440.59 -1.94 -26.85 16 18 C 0.59 22.84 7.79 86.54 0.67 23.52 16 19 O -0.55 -24.65 16.47 -4.20 -0.07 -24.72 16 20 C -0.04 -1.43 7.07 24.00 0.17 -1.26 16 21 C -0.11 -3.29 10.81 23.79 0.26 -3.03 16 22 C -0.17 -4.14 6.38 -20.23 -0.13 -4.27 16 23 C -0.07 -1.17 10.06 22.25 0.22 -0.94 16 24 C -0.13 -1.63 9.98 22.04 0.22 -1.41 16 25 C -0.07 -0.86 10.01 22.31 0.22 -0.64 16 26 C -0.12 -2.25 10.07 22.35 0.23 -2.03 16 27 C 0.04 1.13 7.41 23.07 0.17 1.30 16 28 O -0.19 -5.95 10.28 -12.92 -0.13 -6.09 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.24 7.81 -2.39 -0.02 1.22 16 32 H 0.05 1.28 6.27 -2.39 -0.02 1.27 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 36 H 0.03 0.97 8.04 -2.39 -0.02 0.95 16 37 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.00 -0.03 7.41 -2.39 -0.02 -0.05 16 39 H 0.01 0.85 7.38 -2.39 -0.02 0.83 16 40 H 0.41 13.36 6.77 -92.70 -0.63 12.73 16 41 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 42 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 45 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -77.13 370.47 3.75 -73.38 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.38 Total: 20.52 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.60 Total: 8.94 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.06 Total: -121.21 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.20 Total: -30.80 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -77.13 3.75 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977555731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.789 kcal (2) G-P(sol) polarization free energy of solvation -77.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds