Wall clock time and date at job start Tue Mar 31 2020 15:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 110.77555 * 2 1 4 4 C 1.54325 * 110.72232 * 236.76125 * 2 1 3 5 5 N 1.47021 * 107.26749 * 263.82923 * 4 2 1 6 6 C 1.36937 * 125.64727 * 181.09771 * 5 4 2 7 7 H 1.07999 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00210 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99956 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47296 * 60.00049 * 10 8 6 12 12 H 1.48503 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47086 * 300.00060 * 10 8 6 14 14 C 1.47423 * 108.70695 * 1.05886 * 5 4 2 15 15 C 1.54912 * 104.83202 * 335.86966 * 14 5 4 16 16 H 1.08996 * 111.00715 * 155.11964 * 15 14 5 17 17 N 1.46501 * 111.00734 * 278.93857 * 15 14 5 18 18 C 1.34771 * 119.99545 * 273.54550 * 17 15 14 19 19 O 1.21647 * 120.00335 * 359.97438 * 18 17 15 20 20 C 1.47090 * 119.99579 * 180.02562 * 18 17 15 21 21 C 1.36048 * 127.14040 * 359.96756 * 20 18 17 22 22 O 1.33810 * 109.84683 * 179.97438 * 21 20 18 23 23 C 1.34905 * 111.35053 * 0.02562 * 22 21 20 24 24 C 1.38970 * 133.11409 * 179.97438 * 23 22 21 25 25 C 1.37845 * 119.97239 * 179.97438 * 24 23 22 26 26 C 1.38687 * 120.65537 * 0.02562 * 25 24 23 27 27 C 1.37841 * 120.19715 * 0.02562 * 26 25 24 28 28 C 1.39106 * 119.63460 * 359.95818 * 27 26 25 29 29 H 1.08996 * 109.46950 * 296.76265 * 1 2 3 30 30 H 1.08996 * 109.46996 * 56.76126 * 1 2 3 31 31 H 1.09003 * 109.46805 * 176.76478 * 1 2 3 32 32 H 1.09004 * 109.47246 * 183.24113 * 3 2 1 33 33 H 1.08996 * 109.47278 * 303.23078 * 3 2 1 34 34 H 1.08991 * 109.47625 * 63.23891 * 3 2 1 35 35 H 1.08999 * 109.88135 * 144.41101 * 4 2 1 36 36 H 1.09001 * 109.87656 * 23.24225 * 4 2 1 37 37 H 0.96997 * 120.00214 * 179.97438 * 9 8 6 38 38 H 1.09000 * 110.36764 * 217.03960 * 14 5 4 39 39 H 1.09003 * 110.36921 * 94.71194 * 14 5 4 40 40 H 0.96998 * 119.99862 * 93.54331 * 17 15 14 41 41 H 1.07995 * 125.07440 * 359.96691 * 21 20 18 42 42 H 1.08007 * 120.01625 * 0.02562 * 24 23 22 43 43 H 1.08004 * 119.66927 * 179.72448 * 25 24 23 44 44 H 1.08000 * 119.89945 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.18152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2073 5 7 2.3717 -2.1531 -0.7389 6 6 2.8947 -3.1633 -1.5013 7 1 3.1253 -2.9904 -2.5421 8 6 3.1284 -4.4095 -0.9363 9 7 2.8478 -4.6201 0.3323 10 14 3.8411 -5.7877 -1.9765 11 1 5.1685 -5.3768 -2.5005 12 1 3.9932 -7.0081 -1.1441 13 1 2.9278 -6.0741 -3.1119 14 6 2.0127 -2.2509 0.6876 15 6 2.0790 -0.7954 1.2139 16 1 1.4402 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3200 -1.2538 3.5641 20 6 5.3746 -0.2944 3.0250 21 6 6.2469 0.3444 2.1992 22 8 7.4144 0.5286 2.8265 23 6 7.3824 0.0309 4.0799 24 6 8.3198 -0.0237 5.1044 25 6 7.9911 -0.6099 6.3080 26 6 6.7297 -1.1495 6.5107 27 6 5.7872 -1.1056 5.5058 28 6 6.1079 -0.5162 4.2873 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0261 -0.0580 32 1 3.1609 1.4063 -0.0581 33 1 1.6751 1.9700 -0.8596 34 1 1.7690 1.9344 0.9175 35 1 2.9869 -0.3206 -1.5775 36 1 1.3263 -0.8255 -1.9976 37 1 3.0107 -5.4910 0.7270 38 1 2.7294 -2.8786 1.2170 39 1 1.0039 -2.6488 0.7986 40 1 3.9926 0.0468 0.8438 41 1 6.0295 0.6562 1.1883 42 1 9.3051 0.3937 4.9580 43 1 8.7249 -0.6536 7.0993 44 1 6.4855 -1.6062 7.4584 45 1 4.8052 -1.5263 5.6637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977660997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:30 Heat of formation + Delta-G solvation = 23.392505 kcal Electronic energy + Delta-G solvation = -28408.306918 eV Core-core repulsion = 24586.061000 eV Total energy + Delta-G solvation = -3822.245918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.57037 -39.59080 -37.93336 -37.71567 -33.85381 -33.22307 -32.60920 -30.71107 -30.44394 -29.55114 -28.03219 -26.81358 -25.62111 -24.10361 -23.43351 -22.54816 -22.23829 -20.36276 -19.65994 -18.74931 -17.69967 -17.38619 -16.70650 -16.28858 -15.93754 -15.63295 -15.59161 -14.66928 -14.28155 -14.11668 -13.93363 -13.82458 -13.77682 -13.47672 -13.19022 -12.84621 -12.61384 -12.33909 -12.19601 -11.98850 -11.92069 -11.75659 -11.32401 -11.18604 -11.03284 -10.99108 -10.76438 -10.43669 -10.24516 -10.10182 -9.96132 -9.82014 -9.68875 -9.52912 -8.71926 -8.67681 -8.43531 -8.20832 -6.81091 -5.62020 -3.05585 0.76693 1.26714 1.83946 2.60051 3.40370 3.44671 3.47007 3.47203 3.56805 3.87097 4.37547 4.49134 4.61296 4.80858 4.91191 4.95316 5.21118 5.22086 5.24487 5.30517 5.35861 5.43852 5.52428 5.61567 5.75269 5.77370 5.85653 6.00488 6.08169 6.10319 6.14441 6.16292 6.23562 6.34014 6.39601 6.44386 6.47641 6.54848 6.59608 6.68498 6.72899 6.97110 7.01785 7.49549 7.62303 7.87915 8.01233 8.40560 8.68968 9.22649 9.84338 10.48175 11.40335 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004107 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.263566 B = 6815.605291 C = 8130.417456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.086 0.914 17 N -0.697 5.697 18 C 0.586 3.414 19 O -0.534 6.534 20 C -0.213 4.213 21 C 0.058 3.942 22 O -0.186 6.186 23 C 0.044 3.956 24 C -0.109 4.109 25 C -0.096 4.096 26 C -0.137 4.137 27 C -0.056 4.056 28 C -0.090 4.090 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.114 0.886 39 H 0.021 0.979 40 H 0.392 0.608 41 H 0.215 0.785 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 13.875 7.476 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.021 3.979 16 H 0.104 0.896 17 N -0.347 5.347 18 C 0.373 3.627 19 O -0.412 6.412 20 C -0.217 4.217 21 C -0.010 4.010 22 O -0.085 6.085 23 C -0.002 4.002 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.155 4.155 27 C -0.074 4.074 28 C -0.092 4.092 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.132 0.868 39 H 0.039 0.961 40 H 0.227 0.773 41 H 0.231 0.769 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.259 13.344 7.993 16.767 hybrid contribution 0.460 -0.670 -1.129 1.391 sum 6.719 12.675 6.864 15.903 Atomic orbital electron populations 1.21684 0.93450 1.02552 1.00906 1.21847 0.96109 0.94502 0.96380 1.21722 1.00194 0.95521 1.01435 1.21408 0.96399 0.86856 0.93627 1.44448 1.74228 1.06651 1.07353 1.18968 1.34497 0.89310 0.92853 0.90645 1.24787 1.01622 0.97611 0.96301 1.69790 1.53381 1.22415 1.10774 0.86210 0.78876 0.81704 0.79007 1.21251 1.21594 1.21232 1.22319 1.00164 0.90449 0.85048 1.22530 0.80825 0.98304 0.96232 0.89565 1.45633 1.15135 1.60032 1.13939 1.16952 0.84428 0.78950 0.82409 1.90765 1.61445 1.41618 1.47414 1.21168 0.96676 1.08868 0.95016 1.24431 0.82037 0.96919 0.97625 1.83826 1.34845 1.66160 1.23700 1.19604 0.96052 0.99838 0.84716 1.19885 0.98224 1.03916 0.90760 1.20914 0.96952 0.97550 0.95979 1.21105 0.93463 1.01509 0.99456 1.20776 1.00414 0.95765 0.90447 1.19457 0.92868 1.02174 0.94680 0.93033 0.92673 0.91700 0.93119 0.92612 0.92712 0.96164 0.95840 0.93602 0.86821 0.96148 0.77334 0.76852 0.85085 0.84825 0.85170 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.41 37.16 0.31 -1.58 16 2 C -0.09 -1.40 0.81 -152.67 -0.12 -1.53 16 3 C -0.13 -1.63 8.07 37.16 0.30 -1.33 16 4 C 0.14 2.79 6.41 -3.06 -0.02 2.77 16 5 N -0.60 -14.82 3.39 -170.07 -0.58 -15.40 16 6 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.56 5.27 -2.53 -0.01 3.55 16 15 C 0.13 2.40 2.56 -65.78 -0.17 2.23 16 16 H 0.09 1.67 7.63 -51.93 -0.40 1.28 16 17 N -0.70 -12.11 4.68 -52.90 -0.25 -12.36 16 18 C 0.59 11.10 7.80 -12.67 -0.10 11.00 16 19 O -0.53 -11.94 16.03 5.24 0.08 -11.86 16 20 C -0.21 -3.47 6.31 -103.25 -0.65 -4.12 16 21 C 0.06 0.74 11.52 29.95 0.34 1.09 16 22 O -0.19 -2.49 10.53 5.34 0.06 -2.44 16 23 C 0.04 0.62 7.39 -38.56 -0.28 0.34 16 24 C -0.11 -1.23 10.06 -39.45 -0.40 -1.62 16 25 C -0.10 -0.96 10.01 -39.56 -0.40 -1.36 16 26 C -0.14 -1.57 10.04 -39.56 -0.40 -1.97 16 27 C -0.06 -0.83 9.88 -39.40 -0.39 -1.22 16 28 C -0.09 -1.44 6.29 -104.98 -0.66 -2.10 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 32 H 0.05 0.58 6.35 -51.93 -0.33 0.25 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 36 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.11 3.27 5.87 -51.93 -0.30 2.96 16 39 H 0.02 0.54 7.80 -51.93 -0.41 0.14 16 40 H 0.39 5.80 5.81 -40.82 -0.24 5.57 16 41 H 0.22 1.88 7.41 -52.49 -0.39 1.49 16 42 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.14 2.19 7.54 -52.49 -0.40 1.79 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -33.82 366.64 -8.68 -42.51 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.17 Total: 6.04 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.89 Total: -2.56 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.27 Total: -54.44 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.14 Total: -14.29 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.82 -8.68 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977660997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.898 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds