Wall clock time and date at job start Tue Mar 31 2020 15:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 110.77555 * 2 1 4 4 C 1.54325 * 110.72232 * 236.76125 * 2 1 3 5 5 N 1.47021 * 107.26749 * 263.82923 * 4 2 1 6 6 C 1.36937 * 125.64727 * 181.09771 * 5 4 2 7 7 H 1.07999 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00210 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99956 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47296 * 60.00049 * 10 8 6 12 12 H 1.48503 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47086 * 300.00060 * 10 8 6 14 14 C 1.47423 * 108.70695 * 1.05886 * 5 4 2 15 15 C 1.54912 * 104.83202 * 335.86966 * 14 5 4 16 16 H 1.08996 * 111.00715 * 155.11964 * 15 14 5 17 17 N 1.46501 * 111.00734 * 278.93857 * 15 14 5 18 18 C 1.34771 * 119.99545 * 273.54550 * 17 15 14 19 19 O 1.21647 * 120.00335 * 359.97438 * 18 17 15 20 20 C 1.47090 * 119.99579 * 180.02562 * 18 17 15 21 21 C 1.36048 * 127.14040 * 359.96756 * 20 18 17 22 22 O 1.33810 * 109.84683 * 179.97438 * 21 20 18 23 23 C 1.34905 * 111.35053 * 0.02562 * 22 21 20 24 24 C 1.38970 * 133.11409 * 179.97438 * 23 22 21 25 25 C 1.37845 * 119.97239 * 179.97438 * 24 23 22 26 26 C 1.38687 * 120.65537 * 0.02562 * 25 24 23 27 27 C 1.37841 * 120.19715 * 0.02562 * 26 25 24 28 28 C 1.39106 * 119.63460 * 359.95818 * 27 26 25 29 29 H 1.08996 * 109.46950 * 296.76265 * 1 2 3 30 30 H 1.08996 * 109.46996 * 56.76126 * 1 2 3 31 31 H 1.09003 * 109.46805 * 176.76478 * 1 2 3 32 32 H 1.09004 * 109.47246 * 183.24113 * 3 2 1 33 33 H 1.08996 * 109.47278 * 303.23078 * 3 2 1 34 34 H 1.08991 * 109.47625 * 63.23891 * 3 2 1 35 35 H 1.08999 * 109.88135 * 144.41101 * 4 2 1 36 36 H 1.09001 * 109.87656 * 23.24225 * 4 2 1 37 37 H 0.96997 * 120.00214 * 179.97438 * 9 8 6 38 38 H 1.09000 * 110.36764 * 217.03960 * 14 5 4 39 39 H 1.09003 * 110.36921 * 94.71194 * 14 5 4 40 40 H 0.96998 * 119.99862 * 93.54331 * 17 15 14 41 41 H 1.07995 * 125.07440 * 359.96691 * 21 20 18 42 42 H 1.08007 * 120.01625 * 0.02562 * 24 23 22 43 43 H 1.08004 * 119.66927 * 179.72448 * 25 24 23 44 44 H 1.08000 * 119.89945 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.18152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2073 5 7 2.3717 -2.1531 -0.7389 6 6 2.8947 -3.1633 -1.5013 7 1 3.1253 -2.9904 -2.5421 8 6 3.1284 -4.4095 -0.9363 9 7 2.8478 -4.6201 0.3323 10 14 3.8411 -5.7877 -1.9765 11 1 5.1685 -5.3768 -2.5005 12 1 3.9932 -7.0081 -1.1441 13 1 2.9278 -6.0741 -3.1119 14 6 2.0127 -2.2509 0.6876 15 6 2.0790 -0.7954 1.2139 16 1 1.4402 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3200 -1.2538 3.5641 20 6 5.3746 -0.2944 3.0250 21 6 6.2469 0.3444 2.1992 22 8 7.4144 0.5286 2.8265 23 6 7.3824 0.0309 4.0799 24 6 8.3198 -0.0237 5.1044 25 6 7.9911 -0.6099 6.3080 26 6 6.7297 -1.1495 6.5107 27 6 5.7872 -1.1056 5.5058 28 6 6.1079 -0.5162 4.2873 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0261 -0.0580 32 1 3.1609 1.4063 -0.0581 33 1 1.6751 1.9700 -0.8596 34 1 1.7690 1.9344 0.9175 35 1 2.9869 -0.3206 -1.5775 36 1 1.3263 -0.8255 -1.9976 37 1 3.0107 -5.4910 0.7270 38 1 2.7294 -2.8786 1.2170 39 1 1.0039 -2.6488 0.7986 40 1 3.9926 0.0468 0.8438 41 1 6.0295 0.6562 1.1883 42 1 9.3051 0.3937 4.9580 43 1 8.7249 -0.6536 7.0993 44 1 6.4855 -1.6062 7.4584 45 1 4.8052 -1.5263 5.6637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977660997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:29 Heat of formation + Delta-G solvation = 1.620798 kcal Electronic energy + Delta-G solvation = -28409.251010 eV Core-core repulsion = 24586.061000 eV Total energy + Delta-G solvation = -3823.190010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61334 -41.11488 -39.30829 -38.83298 -35.69443 -34.70058 -33.74651 -32.60942 -31.42136 -30.67477 -29.58367 -28.03587 -27.40736 -25.57914 -24.61110 -23.90829 -23.21668 -22.09637 -21.12849 -20.09415 -18.90464 -18.72207 -18.36382 -17.37070 -17.31284 -16.96081 -16.69938 -16.48280 -15.79336 -15.57254 -15.33214 -15.26157 -14.90089 -14.65492 -14.64447 -14.12553 -13.79362 -13.71964 -13.64671 -13.29700 -13.04543 -13.00755 -12.89048 -12.82899 -12.62312 -12.56687 -12.18387 -11.98305 -11.79090 -11.76702 -11.44722 -11.36245 -11.21260 -11.06901 -10.75281 -10.01685 -9.69202 -9.27826 -8.84890 -7.75613 -5.21013 -0.24794 0.28485 0.72380 1.42989 1.46168 1.52847 1.60669 2.10850 2.30463 2.48303 2.75333 3.33859 3.39987 3.48947 3.57245 3.69292 3.80881 3.96993 4.07262 4.09835 4.19071 4.33903 4.39187 4.41290 4.51693 4.52520 4.71645 4.82528 4.84756 4.88286 4.93397 5.03505 5.10098 5.11177 5.20584 5.21231 5.29573 5.34477 5.37993 5.48025 5.49426 5.53543 5.57014 5.67809 5.83516 6.03167 6.31435 6.59077 7.08657 7.26557 7.79522 8.43084 9.24503 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.004107 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.263566 B = 6815.605291 C = 8130.417456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.233 4.233 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.276 1.276 14 C 0.154 3.846 15 C 0.138 3.862 16 H 0.077 0.923 17 N -0.686 5.686 18 C 0.583 3.417 19 O -0.584 6.584 20 C -0.262 4.262 21 C 0.095 3.905 22 O -0.180 6.180 23 C 0.026 3.974 24 C -0.102 4.102 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.096 4.096 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.026 0.974 37 H 0.241 0.759 38 H 0.067 0.933 39 H -0.016 1.016 40 H 0.407 0.593 41 H 0.257 0.743 42 H 0.165 0.835 43 H 0.179 0.821 44 H 0.155 0.845 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.010 16.806 6.511 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.362 4.362 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.804 3.196 11 H -0.200 1.200 12 H -0.228 1.228 13 H -0.202 1.202 14 C 0.028 3.972 15 C 0.032 3.968 16 H 0.095 0.905 17 N -0.337 5.337 18 C 0.372 3.628 19 O -0.466 6.466 20 C -0.267 4.267 21 C 0.027 3.973 22 O -0.079 6.079 23 C -0.020 4.020 24 C -0.120 4.120 25 C -0.105 4.105 26 C -0.144 4.144 27 C -0.114 4.114 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.001 0.999 40 H 0.244 0.756 41 H 0.272 0.728 42 H 0.183 0.817 43 H 0.196 0.804 44 H 0.173 0.827 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.827 16.338 6.980 19.838 hybrid contribution -0.311 -1.573 -0.794 1.790 sum 8.516 14.765 6.186 18.132 Atomic orbital electron populations 1.21698 0.92489 1.01206 1.03075 1.21833 0.96859 0.96101 0.92535 1.21713 1.00974 0.92411 1.03213 1.21672 0.97333 0.84675 0.95037 1.44674 1.73945 1.08365 1.07343 1.19422 1.33176 0.90070 0.93519 0.89572 1.25627 1.02938 1.00212 0.97321 1.70127 1.55261 1.21985 1.12607 0.85189 0.78646 0.78343 0.77402 1.19973 1.22805 1.20228 1.21929 0.96595 0.93309 0.85378 1.22184 0.82014 0.95535 0.97056 0.90460 1.45457 1.14613 1.59627 1.13960 1.17430 0.85394 0.77893 0.82122 1.90728 1.62969 1.43901 1.48952 1.21046 0.96034 1.12627 0.96967 1.25094 0.80725 0.93448 0.98080 1.83845 1.34664 1.65783 1.23627 1.19980 0.95965 1.00645 0.85453 1.20437 0.98919 1.02653 0.89973 1.21435 0.96792 0.95642 0.96670 1.21469 0.93423 1.00241 0.99294 1.20783 1.00510 0.98183 0.91969 1.19759 0.94191 1.03378 0.95015 0.91314 0.89967 0.94911 0.91887 0.90134 0.91579 0.94216 0.95577 0.94912 0.91513 0.99856 0.75575 0.72751 0.81709 0.80408 0.82712 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.41 71.98 0.61 -2.99 16 2 C -0.07 -2.22 0.81 -50.99 -0.04 -2.26 16 3 C -0.13 -2.65 8.07 71.98 0.58 -2.07 16 4 C 0.14 5.18 6.41 86.73 0.56 5.74 16 5 N -0.62 -31.13 3.39 -691.98 -2.35 -33.47 16 6 C -0.23 -12.95 10.27 84.03 0.86 -12.09 16 7 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 8 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 9 N -0.95 -59.97 10.09 21.65 0.22 -59.75 16 10 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 C 0.15 8.02 5.27 86.86 0.46 8.48 16 15 C 0.14 5.41 2.56 46.39 0.12 5.53 16 16 H 0.08 3.17 7.63 -2.39 -0.02 3.15 16 17 N -0.69 -24.13 4.68 -439.53 -2.06 -26.18 16 18 C 0.58 23.29 7.80 86.57 0.68 23.97 16 19 O -0.58 -28.53 16.03 -4.18 -0.07 -28.60 16 20 C -0.26 -8.77 6.31 -18.97 -0.12 -8.89 16 21 C 0.09 2.29 11.52 67.31 0.78 3.06 16 22 O -0.18 -4.46 10.53 -3.82 -0.04 -4.50 16 23 C 0.03 0.69 7.39 22.93 0.17 0.86 16 24 C -0.10 -1.97 10.06 22.35 0.22 -1.75 16 25 C -0.09 -1.48 10.01 22.28 0.22 -1.26 16 26 C -0.13 -2.79 10.04 22.28 0.22 -2.57 16 27 C -0.10 -3.04 9.88 22.38 0.22 -2.82 16 28 C -0.12 -4.03 6.29 -20.10 -0.13 -4.16 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 32 H 0.06 1.18 6.35 -2.39 -0.02 1.17 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.37 7.76 -2.39 -0.02 1.35 16 36 H 0.03 0.99 7.84 -2.39 -0.02 0.97 16 37 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 39 H -0.02 -0.94 7.80 -2.39 -0.02 -0.96 16 40 H 0.41 11.43 5.81 -92.71 -0.54 10.89 16 41 H 0.26 3.57 7.41 -2.91 -0.02 3.55 16 42 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.11 3.97 7.54 -2.91 -0.02 3.95 16 Total: -1.00 -82.14 366.64 4.08 -78.06 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.48 Total: 22.32 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.87 Total: 3.28 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -4.19 Total: -119.40 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.11 Total: -33.10 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -82.14 4.08 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977660997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.683 kcal (2) G-P(sol) polarization free energy of solvation -82.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds