Wall clock time and date at job start Tue Mar 31 2020 15:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.88884 * 2 1 4 4 C 1.55127 * 111.19619 * 236.06390 * 2 1 3 5 5 N 1.47423 * 104.72567 * 279.19471 * 4 2 1 6 6 C 1.34774 * 125.65074 * 155.81546 * 5 4 2 7 7 O 1.21567 * 120.00038 * 5.03471 * 6 5 4 8 8 C 1.47700 * 119.99962 * 185.04284 * 6 5 4 9 9 C 1.40101 * 120.02443 * 172.12202 * 8 6 5 10 10 C 1.36436 * 120.68881 * 179.97438 * 9 8 6 11 11 C 1.39158 * 120.27033 * 0.02562 * 10 9 8 12 12 O 1.34753 * 133.25286 * 180.02562 * 11 10 9 13 13 C 1.34442 * 110.95442 * 179.97438 * 12 11 10 14 14 C 1.33955 * 110.20344 * 359.75583 * 13 12 11 15 15 C 1.40678 * 119.54301 * 359.97438 * 11 10 9 16 16 C 1.39080 * 120.20351 * 0.02562 * 15 11 10 17 17 C 1.47020 * 108.69996 * 335.54813 * 5 4 2 18 18 C 1.54324 * 107.27443 * 1.28921 * 17 5 4 19 19 H 1.09003 * 110.72488 * 140.55441 * 18 17 5 20 20 N 1.46497 * 110.71994 * 263.82889 * 18 17 5 21 21 C 1.36937 * 120.00277 * 273.54149 * 20 18 17 22 22 H 1.08002 * 119.99778 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99976 * 179.97438 * 21 20 18 24 24 N 1.31611 * 120.00479 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99656 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47372 * 59.99914 * 25 23 21 27 27 H 1.48506 * 109.47086 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47170 * 299.99505 * 25 23 21 29 29 H 1.09002 * 109.47020 * 296.11989 * 1 2 3 30 30 H 1.08997 * 109.47348 * 56.12159 * 1 2 3 31 31 H 1.09003 * 109.47399 * 176.12273 * 1 2 3 32 32 H 1.08998 * 109.47515 * 183.87712 * 3 2 1 33 33 H 1.08998 * 109.46704 * 303.88552 * 3 2 1 34 34 H 1.09003 * 109.46865 * 63.87632 * 3 2 1 35 35 H 1.08996 * 110.49681 * 160.34493 * 4 2 1 36 36 H 1.09008 * 110.33944 * 37.95554 * 4 2 1 37 37 H 1.08004 * 119.66015 * 359.94951 * 9 8 6 38 38 H 1.07998 * 119.86383 * 179.97438 * 10 9 8 39 39 H 1.08003 * 124.89630 * 179.97438 * 13 12 11 40 40 H 1.07998 * 126.93137 * 180.27872 * 14 13 12 41 41 H 1.08001 * 120.32425 * 180.02562 * 16 15 11 42 42 H 1.09000 * 109.88172 * 120.70610 * 17 5 4 43 43 H 1.08996 * 109.88738 * 241.71624 * 17 5 4 44 44 H 0.97009 * 120.00101 * 93.54344 * 20 18 17 45 45 H 0.97003 * 120.00694 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2835 -1.5927 7 8 2.0394 -3.1325 -2.7954 8 6 1.7618 -4.6366 -1.0303 9 6 1.5272 -5.7238 -1.8823 10 6 1.3546 -6.9795 -1.3775 11 6 1.4090 -7.1970 -0.0041 12 8 1.2794 -8.2978 0.7623 13 6 1.4148 -7.9952 2.0652 14 6 1.6446 -6.6840 2.2141 15 6 1.6440 -6.1130 0.8611 16 6 1.8200 -4.8328 0.3469 17 6 2.0285 -2.2644 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4523 -0.6783 2.0800 20 7 3.4666 -0.4150 1.4965 21 6 4.0065 -0.6794 2.7268 22 1 3.4147 -1.1776 3.4805 23 6 5.3147 -0.3079 3.0050 24 7 6.0361 0.2987 2.0865 25 14 6.0514 -0.6693 4.6832 26 1 6.0350 -2.1341 4.9261 27 1 7.4513 -0.1755 4.7260 28 1 5.2534 0.0154 5.7319 29 1 -0.3633 0.4524 0.9227 30 1 -0.3634 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1629 1.4034 -0.0695 33 1 1.6697 1.9731 -0.8531 34 1 1.7822 1.9302 0.9227 35 1 3.1252 -0.5271 -1.3985 36 1 1.4764 -0.6458 -2.0858 37 1 1.4822 -5.5662 -2.9498 38 1 1.1741 -7.8079 -2.0465 39 1 1.3512 -8.7073 2.8747 40 1 1.7982 -6.1534 3.1422 41 1 2.0009 -3.9992 1.0093 42 1 1.1219 -2.7475 1.0610 43 1 2.9048 -2.8135 1.0412 44 1 3.9983 0.0322 0.8194 45 1 6.9505 0.5580 2.2807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995857275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:04 Heat of formation + Delta-G solvation = 36.189274 kcal Electronic energy + Delta-G solvation = -28385.215399 eV Core-core repulsion = 24563.524390 eV Total energy + Delta-G solvation = -3821.691008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54678 -40.32421 -38.33265 -37.09442 -34.10510 -33.47687 -32.85064 -30.90041 -30.61947 -29.45743 -28.11178 -26.79750 -26.29373 -24.50611 -23.49034 -22.48736 -21.83768 -21.21006 -19.62298 -18.83539 -17.78112 -17.24958 -17.11632 -16.47672 -16.22688 -15.74297 -15.38353 -14.77546 -14.62679 -14.25741 -13.87293 -13.84375 -13.55731 -13.34182 -13.23267 -12.86388 -12.77571 -12.60464 -12.46796 -12.12550 -12.00078 -11.85031 -11.71973 -11.51936 -11.09975 -10.93539 -10.90004 -10.59930 -10.35115 -10.33298 -10.25308 -9.86037 -9.76851 -9.67118 -9.01198 -8.72530 -8.37519 -8.26161 -7.11149 -5.88216 -3.18778 0.80192 0.92980 2.26596 2.64301 2.96547 3.25416 3.36400 3.41249 3.42957 3.84348 4.29661 4.47540 4.53341 4.60252 4.89304 4.94928 5.00943 5.17694 5.20940 5.21483 5.29458 5.39137 5.48314 5.55829 5.61060 5.68172 5.75549 5.85951 5.90206 6.05007 6.05869 6.08246 6.15764 6.17452 6.19427 6.23632 6.27861 6.33386 6.35352 6.44885 6.51347 6.63339 6.70311 6.88216 7.00703 7.58106 7.81805 8.29201 8.39817 9.41396 9.95566 10.30287 11.33633 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.004466 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.398467 B = 6268.048583 C = 8225.713843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.122 3.878 5 N -0.597 5.597 6 C 0.573 3.427 7 O -0.551 6.551 8 C -0.144 4.144 9 C -0.039 4.039 10 C -0.120 4.120 11 C 0.068 3.932 12 O -0.196 6.196 13 C -0.003 4.003 14 C -0.197 4.197 15 C -0.143 4.143 16 C -0.064 4.064 17 C 0.059 3.941 18 C 0.177 3.823 19 H 0.072 0.928 20 N -0.711 5.711 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.005 4.005 24 N -0.927 5.927 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.208 0.792 40 H 0.162 0.838 41 H 0.175 0.825 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 -10.641 -2.383 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C -0.001 4.001 5 N -0.329 5.329 6 C 0.363 3.637 7 O -0.431 6.431 8 C -0.147 4.147 9 C -0.057 4.057 10 C -0.138 4.138 11 C 0.020 3.980 12 O -0.098 6.098 13 C -0.068 4.068 14 C -0.216 4.216 15 C -0.144 4.144 16 C -0.081 4.081 17 C -0.067 4.067 18 C 0.065 3.935 19 H 0.090 0.910 20 N -0.352 5.352 21 C -0.381 4.381 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.225 0.775 40 H 0.180 0.820 41 H 0.192 0.808 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.224 0.776 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.468 -10.887 -2.988 16.820 hybrid contribution 0.818 -0.194 1.009 1.313 sum -11.650 -11.081 -1.979 16.200 Atomic orbital electron populations 1.21684 0.93893 1.01514 1.01672 1.22054 0.95325 0.96131 0.95540 1.21576 1.02118 0.93489 1.01104 1.22348 1.01224 0.79472 0.97014 1.48237 1.71004 1.06169 1.07466 1.17745 0.76985 0.83398 0.85576 1.90737 1.52134 1.85863 1.14414 1.19758 1.07584 0.94003 0.93369 1.20708 0.94568 0.89928 1.00541 1.19541 1.06554 0.98006 0.89736 1.19933 1.00665 0.84338 0.93078 1.83977 1.74902 1.33802 1.17075 1.23933 1.02530 0.97077 0.83233 1.22620 1.07685 0.94288 0.96973 1.19958 1.06820 0.94338 0.93302 1.22500 0.93011 0.97230 0.95390 1.23745 1.00526 1.03059 0.79324 1.21285 0.88818 0.88964 0.94447 0.91019 1.42456 1.08168 1.69884 1.14710 1.19154 0.95520 1.32893 0.90543 0.91052 1.24737 0.96816 1.00815 0.97847 1.69636 1.09579 1.44987 1.33241 0.86298 0.78331 0.77877 0.83808 1.21224 1.21676 1.21158 0.92243 0.92735 0.92855 0.91166 0.93559 0.92039 0.91011 0.91050 0.83658 0.84673 0.77528 0.82019 0.80840 0.91791 0.89494 0.77647 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.58 37.15 0.32 -1.31 16 2 C -0.09 -1.34 0.83 -152.24 -0.13 -1.47 16 3 C -0.13 -1.91 8.22 37.16 0.31 -1.61 16 4 C 0.12 2.00 5.80 -2.41 -0.01 1.98 16 5 N -0.60 -10.12 3.31 -175.51 -0.58 -10.70 16 6 C 0.57 10.19 7.80 -12.40 -0.10 10.10 16 7 O -0.55 -11.11 16.65 5.31 0.09 -11.02 16 8 C -0.14 -2.25 5.87 -104.96 -0.62 -2.87 16 9 C -0.04 -0.53 9.51 -39.53 -0.38 -0.90 16 10 C -0.12 -1.47 9.99 -39.89 -0.40 -1.87 16 11 C 0.07 0.91 7.42 -38.32 -0.28 0.62 16 12 O -0.20 -2.38 10.57 4.09 0.04 -2.33 16 13 C 0.00 -0.03 11.95 29.23 0.35 0.32 16 14 C -0.20 -2.22 11.15 -37.60 -0.42 -2.64 16 15 C -0.14 -2.00 6.39 -105.18 -0.67 -2.67 16 16 C -0.06 -0.94 8.64 -38.90 -0.34 -1.28 16 17 C 0.06 0.96 4.29 -3.07 -0.01 0.95 16 18 C 0.18 3.10 2.86 -66.09 -0.19 2.92 16 19 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 20 N -0.71 -15.93 4.61 -51.65 -0.24 -16.17 16 21 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.14 5.50 -17.44 -0.10 -0.23 16 24 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 25 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.30 7.99 -51.93 -0.41 0.88 16 36 H 0.07 1.13 8.01 -51.92 -0.42 0.71 16 37 H 0.15 1.85 7.65 -52.48 -0.40 1.44 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.21 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.18 2.55 2.77 -57.61 -0.16 2.39 16 42 H 0.06 0.90 6.65 -51.93 -0.35 0.56 16 43 H 0.09 1.60 6.71 -51.93 -0.35 1.25 16 44 H 0.39 9.42 6.10 -40.82 -0.25 9.17 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -31.05 364.94 -8.30 -39.35 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.00 Total: 11.43 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.81 Total: -6.43 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.13 Total: -13.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.05 -8.30 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995857275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.540 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds