Wall clock time and date at job start Tue Mar 31 2020 15:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.88884 * 2 1 4 4 C 1.55127 * 111.19619 * 236.06390 * 2 1 3 5 5 N 1.47423 * 104.72567 * 279.19471 * 4 2 1 6 6 C 1.34774 * 125.65074 * 155.81546 * 5 4 2 7 7 O 1.21567 * 120.00038 * 5.03471 * 6 5 4 8 8 C 1.47700 * 119.99962 * 185.04284 * 6 5 4 9 9 C 1.40101 * 120.02443 * 172.12202 * 8 6 5 10 10 C 1.36436 * 120.68881 * 179.97438 * 9 8 6 11 11 C 1.39158 * 120.27033 * 0.02562 * 10 9 8 12 12 O 1.34753 * 133.25286 * 180.02562 * 11 10 9 13 13 C 1.34442 * 110.95442 * 179.97438 * 12 11 10 14 14 C 1.33955 * 110.20344 * 359.75583 * 13 12 11 15 15 C 1.40678 * 119.54301 * 359.97438 * 11 10 9 16 16 C 1.39080 * 120.20351 * 0.02562 * 15 11 10 17 17 C 1.47020 * 108.69996 * 335.54813 * 5 4 2 18 18 C 1.54324 * 107.27443 * 1.28921 * 17 5 4 19 19 H 1.09003 * 110.72488 * 140.55441 * 18 17 5 20 20 N 1.46497 * 110.71994 * 263.82889 * 18 17 5 21 21 C 1.36937 * 120.00277 * 273.54149 * 20 18 17 22 22 H 1.08002 * 119.99778 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99976 * 179.97438 * 21 20 18 24 24 N 1.31611 * 120.00479 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99656 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47372 * 59.99914 * 25 23 21 27 27 H 1.48506 * 109.47086 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47170 * 299.99505 * 25 23 21 29 29 H 1.09002 * 109.47020 * 296.11989 * 1 2 3 30 30 H 1.08997 * 109.47348 * 56.12159 * 1 2 3 31 31 H 1.09003 * 109.47399 * 176.12273 * 1 2 3 32 32 H 1.08998 * 109.47515 * 183.87712 * 3 2 1 33 33 H 1.08998 * 109.46704 * 303.88552 * 3 2 1 34 34 H 1.09003 * 109.46865 * 63.87632 * 3 2 1 35 35 H 1.08996 * 110.49681 * 160.34493 * 4 2 1 36 36 H 1.09008 * 110.33944 * 37.95554 * 4 2 1 37 37 H 1.08004 * 119.66015 * 359.94951 * 9 8 6 38 38 H 1.07998 * 119.86383 * 179.97438 * 10 9 8 39 39 H 1.08003 * 124.89630 * 179.97438 * 13 12 11 40 40 H 1.07998 * 126.93137 * 180.27872 * 14 13 12 41 41 H 1.08001 * 120.32425 * 180.02562 * 16 15 11 42 42 H 1.09000 * 109.88172 * 120.70610 * 17 5 4 43 43 H 1.08996 * 109.88738 * 241.71624 * 17 5 4 44 44 H 0.97009 * 120.00101 * 93.54344 * 20 18 17 45 45 H 0.97003 * 120.00694 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9472 -3.2835 -1.5927 7 8 2.0394 -3.1325 -2.7954 8 6 1.7618 -4.6366 -1.0303 9 6 1.5272 -5.7238 -1.8823 10 6 1.3546 -6.9795 -1.3775 11 6 1.4090 -7.1970 -0.0041 12 8 1.2794 -8.2978 0.7623 13 6 1.4148 -7.9952 2.0652 14 6 1.6446 -6.6840 2.2141 15 6 1.6440 -6.1130 0.8611 16 6 1.8200 -4.8328 0.3469 17 6 2.0285 -2.2644 0.6969 18 6 2.0861 -0.8075 1.2026 19 1 1.4523 -0.6783 2.0800 20 7 3.4666 -0.4150 1.4965 21 6 4.0065 -0.6794 2.7268 22 1 3.4147 -1.1776 3.4805 23 6 5.3147 -0.3079 3.0050 24 7 6.0361 0.2987 2.0865 25 14 6.0514 -0.6693 4.6832 26 1 6.0350 -2.1341 4.9261 27 1 7.4513 -0.1755 4.7260 28 1 5.2534 0.0154 5.7319 29 1 -0.3633 0.4524 0.9227 30 1 -0.3634 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1629 1.4034 -0.0695 33 1 1.6697 1.9731 -0.8531 34 1 1.7822 1.9302 0.9227 35 1 3.1252 -0.5271 -1.3985 36 1 1.4764 -0.6458 -2.0858 37 1 1.4822 -5.5662 -2.9498 38 1 1.1741 -7.8079 -2.0465 39 1 1.3512 -8.7073 2.8747 40 1 1.7982 -6.1534 3.1422 41 1 2.0009 -3.9992 1.0093 42 1 1.1219 -2.7475 1.0610 43 1 2.9048 -2.8135 1.0412 44 1 3.9983 0.0322 0.8194 45 1 6.9505 0.5580 2.2807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995857275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:03 Heat of formation + Delta-G solvation = 18.087643 kcal Electronic energy + Delta-G solvation = -28386.000344 eV Core-core repulsion = 24563.524390 eV Total energy + Delta-G solvation = -3822.475954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.47505 -41.66095 -39.62091 -38.30614 -35.78683 -34.88226 -33.81295 -32.64964 -31.76016 -30.43350 -29.57389 -28.04559 -27.57618 -26.05425 -24.86694 -23.51465 -23.16285 -22.24087 -20.87546 -20.21199 -19.09828 -18.82941 -18.10712 -17.63297 -17.25564 -17.10728 -16.72033 -16.39577 -15.80014 -15.78100 -15.40468 -15.03343 -14.75248 -14.65699 -14.33884 -14.18455 -13.91572 -13.69420 -13.62839 -13.30761 -13.25985 -13.15551 -13.08057 -12.80048 -12.73797 -12.68224 -12.18936 -12.14065 -12.01152 -11.60293 -11.45708 -11.28288 -11.27188 -11.13935 -10.80704 -9.88083 -9.60761 -9.29524 -8.99697 -7.90963 -5.19527 -0.29406 -0.06601 1.40249 1.50676 1.52085 1.57913 1.71357 1.76856 1.93057 2.58165 2.69662 3.24884 3.38054 3.42280 3.62683 3.70377 3.77723 3.86263 4.00041 4.02810 4.16665 4.25935 4.31498 4.38399 4.41069 4.56466 4.58575 4.63510 4.74166 4.82985 4.84233 4.90106 4.97251 5.04122 5.05905 5.09006 5.12890 5.16013 5.28007 5.32530 5.39966 5.42175 5.46841 5.55356 5.60761 6.07743 6.29487 6.44407 7.01169 7.37713 8.11143 8.34353 9.32077 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.004466 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.398467 B = 6268.048583 C = 8225.713843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.119 4.119 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.568 3.432 7 O -0.583 6.583 8 C -0.162 4.162 9 C -0.049 4.049 10 C -0.108 4.108 11 C 0.055 3.945 12 O -0.200 6.200 13 C 0.019 3.981 14 C -0.221 4.221 15 C -0.160 4.160 16 C -0.073 4.073 17 C 0.072 3.928 18 C 0.169 3.831 19 H 0.085 0.915 20 N -0.722 5.722 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.276 1.276 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.256 0.744 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.375 0.625 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 -12.645 -1.029 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.177 4.177 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.165 4.165 9 C -0.068 4.068 10 C -0.126 4.126 11 C 0.007 3.993 12 O -0.101 6.101 13 C -0.045 4.045 14 C -0.240 4.240 15 C -0.161 4.161 16 C -0.090 4.090 17 C -0.053 4.053 18 C 0.058 3.942 19 H 0.102 0.898 20 N -0.362 5.362 21 C -0.368 4.368 22 H 0.102 0.898 23 C -0.263 4.263 24 N -0.619 5.619 25 Si 0.795 3.205 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.202 1.202 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.272 0.728 40 H 0.195 0.805 41 H 0.187 0.813 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.209 0.791 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.797 -12.915 -1.609 19.706 hybrid contribution 1.442 0.317 0.593 1.591 sum -13.355 -12.598 -1.016 18.387 Atomic orbital electron populations 1.21647 0.91109 1.02121 1.03188 1.22012 0.97218 0.95222 0.93263 1.21507 1.00105 0.93994 1.02121 1.22352 1.00046 0.79682 0.98145 1.48307 1.70621 1.06269 1.07688 1.18171 0.76297 0.84304 0.85288 1.90703 1.53750 1.86437 1.15649 1.19719 1.09381 0.93271 0.94122 1.20799 0.95237 0.90098 1.00636 1.19813 1.04596 0.98173 0.90017 1.20162 1.00883 0.84685 0.93600 1.84007 1.74654 1.33297 1.18106 1.24866 0.99218 0.97427 0.82965 1.22906 1.09436 0.95187 0.96473 1.20294 1.06559 0.94120 0.95085 1.22398 0.93858 0.97828 0.94944 1.23552 1.00950 1.01812 0.78963 1.21554 0.86610 0.89972 0.96029 0.89763 1.42616 1.09991 1.69936 1.13659 1.19599 0.95350 1.30401 0.91456 0.89772 1.25463 0.97751 1.02137 1.00936 1.69806 1.09402 1.47578 1.35134 0.85329 0.76811 0.77837 0.80475 1.20517 1.23088 1.20164 0.90848 0.91114 0.92725 0.94366 0.91049 0.92176 0.93584 0.90213 0.83209 0.81654 0.72784 0.80517 0.81288 0.88912 0.91707 0.79105 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.58 71.98 0.62 -2.16 16 2 C -0.08 -2.22 0.83 -50.71 -0.04 -2.26 16 3 C -0.12 -3.62 8.22 71.98 0.59 -3.03 16 4 C 0.12 4.00 5.80 86.93 0.50 4.50 16 5 N -0.60 -20.50 3.31 -827.46 -2.74 -23.24 16 6 C 0.57 20.60 7.80 86.74 0.68 21.27 16 7 O -0.58 -24.09 16.65 -3.93 -0.07 -24.16 16 8 C -0.16 -5.08 5.87 -20.09 -0.12 -5.20 16 9 C -0.05 -1.31 9.51 22.30 0.21 -1.10 16 10 C -0.11 -2.46 9.99 22.07 0.22 -2.24 16 11 C 0.05 1.36 7.42 23.09 0.17 1.54 16 12 O -0.20 -4.23 10.57 -8.29 -0.09 -4.31 16 13 C 0.02 0.29 11.95 66.84 0.80 1.09 16 14 C -0.22 -4.46 11.15 23.55 0.26 -4.19 16 15 C -0.16 -4.24 6.39 -20.22 -0.13 -4.37 16 16 C -0.07 -2.13 8.64 22.71 0.20 -1.93 16 17 C 0.07 2.33 4.29 86.73 0.37 2.70 16 18 C 0.17 5.81 2.86 46.18 0.13 5.95 16 19 H 0.08 2.73 8.03 -2.39 -0.02 2.71 16 20 N -0.72 -32.88 4.61 -317.32 -1.46 -34.34 16 21 C -0.24 -11.94 9.98 84.03 0.84 -11.10 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 24 N -0.97 -57.39 13.06 21.65 0.28 -57.11 16 25 Si 0.97 44.03 29.55 68.60 2.03 46.05 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 32 H 0.04 1.40 6.38 -2.39 -0.02 1.39 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 36 H 0.08 2.51 8.01 -2.38 -0.02 2.49 16 37 H 0.15 3.79 7.65 -2.91 -0.02 3.77 16 38 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.26 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.17 4.95 2.77 -7.73 -0.02 4.92 16 42 H 0.09 2.49 6.65 -2.39 -0.02 2.48 16 43 H 0.07 2.42 6.71 -2.39 -0.02 2.41 16 44 H 0.38 18.99 6.10 -92.70 -0.57 18.42 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.36 364.94 4.17 -65.19 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.45 Total: 35.80 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.77 Total: -3.89 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.92 Total: -114.69 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.15 Total: -28.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.36 4.17 -65.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995857275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.275 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds