Wall clock time and date at job start Tue Mar 31 2020 15:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 110.30168 * 2 1 4 4 C 1.54388 * 110.34030 * 237.83061 * 2 1 3 5 5 N 1.48312 * 104.53367 * 217.33168 * 4 2 1 6 6 C 1.34778 * 127.77278 * 219.51755 * 5 4 2 7 7 O 1.21655 * 119.99662 * 359.90512 * 6 5 4 8 8 C 1.46976 * 120.00239 * 179.91150 * 6 5 4 9 9 C 1.35811 * 125.13125 * 179.71864 * 8 6 5 10 10 C 1.46246 * 106.07890 * 179.86012 * 9 8 6 11 11 C 1.39704 * 134.18812 * 180.12438 * 10 9 8 12 12 C 1.36624 * 119.70526 * 180.30194 * 11 10 9 13 13 C 1.38836 * 120.44554 * 359.97052 * 12 11 10 14 14 C 1.37790 * 120.74540 * 0.04986 * 13 12 11 15 15 C 1.39024 * 119.85591 * 359.95473 * 14 13 12 16 16 O 1.34715 * 133.24680 * 180.02562 * 15 14 13 17 17 C 1.48147 * 104.39569 * 39.46344 * 5 4 2 18 18 C 1.54283 * 110.34527 * 122.17868 * 2 1 3 19 19 H 1.09003 * 110.34282 * 237.74480 * 18 2 1 20 20 N 1.46500 * 110.33978 * 359.97438 * 18 2 1 21 21 C 1.36936 * 120.00148 * 204.99798 * 20 18 2 22 22 H 1.08002 * 119.99798 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00608 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00375 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46970 * 90.00463 * 25 23 21 27 27 H 1.48503 * 109.47146 * 210.00122 * 25 23 21 28 28 H 1.48501 * 109.47196 * 330.00139 * 25 23 21 29 29 H 1.08996 * 109.47351 * 59.29954 * 1 2 3 30 30 H 1.08999 * 109.46680 * 179.29653 * 1 2 3 31 31 H 1.08998 * 109.47007 * 299.29513 * 1 2 3 32 32 H 1.09004 * 109.46723 * 60.70627 * 3 2 1 33 33 H 1.08999 * 109.46937 * 180.70078 * 3 2 1 34 34 H 1.08997 * 109.47162 * 300.70280 * 3 2 1 35 35 H 1.08993 * 110.41105 * 336.03912 * 4 2 1 36 36 H 1.08999 * 110.41186 * 98.47662 * 4 2 1 37 37 H 1.08001 * 126.95837 * 359.97021 * 9 8 6 38 38 H 1.07991 * 120.14553 * 0.31874 * 11 10 9 39 39 H 1.08006 * 119.77523 * 180.02562 * 12 11 10 40 40 H 1.08005 * 119.62383 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.07458 * 179.97438 * 14 13 12 42 42 H 1.09000 * 110.41356 * 201.69193 * 17 5 4 43 43 H 1.09000 * 110.50931 * 79.30458 * 17 5 4 44 44 H 0.96998 * 120.00386 * 25.00343 * 20 18 2 45 45 H 0.96995 * 119.99416 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 6 2.0667 -0.7707 -1.2254 5 7 3.2664 -1.4822 -0.7214 6 6 4.4425 -1.6676 -1.3531 7 8 4.6068 -1.2255 -2.4745 8 6 5.5264 -2.4038 -0.6873 9 6 6.7470 -2.6551 -1.2270 10 6 7.4907 -3.4049 -0.2153 11 6 8.7768 -3.9471 -0.1550 12 6 9.1776 -4.6160 0.9669 13 6 8.3159 -4.7594 2.0460 14 6 7.0434 -4.2324 2.0061 15 6 6.6129 -3.5477 0.8754 16 8 5.4568 -2.9374 0.5502 17 6 2.8803 -1.9416 0.6331 18 6 2.0665 -0.7704 1.2244 19 1 2.7096 -0.1271 1.8249 20 7 0.9556 -1.2785 2.0330 21 6 1.1372 -1.5259 3.3675 22 1 2.0994 -1.3461 3.8240 23 6 0.0845 -2.0069 4.1340 24 7 -1.0883 -2.2255 3.5778 25 14 0.3322 -2.3437 5.9545 26 1 0.0128 -1.1197 6.7323 27 1 -0.5643 -3.4485 6.3800 28 1 1.7449 -2.7308 6.1986 29 1 -0.3634 0.5246 -0.8836 30 1 -0.3632 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 1.7154 1.9502 0.8963 33 1 3.1507 1.4192 -0.0126 34 1 1.6949 1.9578 -0.8836 35 1 1.3236 -1.4844 -1.5808 36 1 2.3400 -0.0774 -2.0207 37 1 7.0981 -2.3594 -2.2046 38 1 9.4513 -3.8378 -0.9912 39 1 10.1718 -5.0353 1.0150 40 1 8.6466 -5.2904 2.9264 41 1 6.3818 -4.3507 2.8516 42 1 3.7674 -2.1312 1.2375 43 1 2.2647 -2.8390 0.5710 44 1 0.0913 -1.4397 1.6232 45 1 -1.8237 -2.5619 4.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996582835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:55 Heat of formation + Delta-G solvation = 21.863854 kcal Electronic energy + Delta-G solvation = -28142.121573 eV Core-core repulsion = 24319.809368 eV Total energy + Delta-G solvation = -3822.312205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57611 -39.93426 -38.18450 -37.85272 -34.22737 -33.22045 -32.89103 -30.84732 -30.59283 -29.80583 -27.69970 -26.97470 -26.56581 -23.98556 -23.66538 -22.76235 -21.82396 -21.41853 -19.83757 -18.58678 -17.76691 -17.37928 -17.26634 -16.49052 -16.05659 -15.87179 -15.42005 -14.68938 -14.60302 -14.20213 -14.11456 -13.85592 -13.73620 -13.53979 -13.28327 -13.14556 -12.76247 -12.56063 -12.44198 -12.15427 -11.88961 -11.73925 -11.64058 -11.25498 -11.12852 -10.97889 -10.95140 -10.60257 -10.50723 -10.34544 -10.21275 -10.19671 -9.89195 -9.66792 -9.05814 -8.83237 -8.62869 -8.31088 -7.08202 -5.86333 -3.16043 0.46235 1.17997 1.75276 2.38829 3.06614 3.17911 3.38237 3.44139 3.45262 3.52452 4.22757 4.44646 4.52192 4.72286 4.80156 4.93291 5.00921 5.05305 5.08216 5.16458 5.20315 5.42091 5.46354 5.60814 5.66128 5.68274 5.78179 5.79003 5.91007 5.95857 6.02739 6.06629 6.16974 6.18678 6.22195 6.23282 6.29806 6.30702 6.39643 6.44811 6.52617 6.58608 6.81293 6.90594 6.96243 7.60429 7.64058 8.06118 8.32391 9.44411 9.98343 10.33676 11.35869 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004207 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.508245 B = 6653.590253 C = 9070.161094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.611 3.389 7 O -0.532 6.532 8 C -0.009 4.009 9 C -0.124 4.124 10 C -0.143 4.143 11 C -0.064 4.064 12 C -0.141 4.141 13 C -0.088 4.088 14 C -0.107 4.107 15 C 0.067 3.933 16 O -0.172 6.172 17 C 0.071 3.929 18 C 0.177 3.823 19 H 0.064 0.936 20 N -0.714 5.714 21 C -0.247 4.247 22 H 0.071 0.929 23 C -0.008 4.008 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.168 0.832 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.391 0.609 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.753 -1.358 -7.768 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.399 3.601 7 O -0.411 6.411 8 C -0.059 4.059 9 C -0.145 4.145 10 C -0.144 4.144 11 C -0.082 4.082 12 C -0.159 4.159 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.018 3.982 16 O -0.073 6.073 17 C -0.054 4.054 18 C 0.064 3.936 19 H 0.082 0.918 20 N -0.357 5.357 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.229 0.771 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.671 -1.149 -8.025 17.644 hybrid contribution -0.078 -0.456 0.931 1.039 sum 15.594 -1.604 -7.094 17.206 Atomic orbital electron populations 1.21680 0.92899 1.02401 1.01755 1.21795 0.96813 0.95459 0.95010 1.21799 1.00354 0.94948 1.01726 1.22577 0.85478 0.95467 0.96920 1.48962 1.12001 1.53596 1.18922 1.16264 0.79898 0.79519 0.84450 1.90850 1.80839 1.51634 1.17815 1.22015 0.97072 1.02247 0.84574 1.22656 0.91850 0.99875 1.00138 1.19932 0.96150 1.03719 0.94634 1.20334 0.93398 0.96051 0.98421 1.20781 1.00336 1.01122 0.93650 1.21000 0.92253 0.98425 0.98894 1.20101 0.97039 0.99487 0.95887 1.19885 0.84540 0.97286 0.96443 1.84282 1.34071 1.58589 1.30363 1.23965 1.00464 1.00632 0.80367 1.21110 0.90353 0.91716 0.90388 0.91758 1.42711 1.09345 1.77155 1.06464 1.19266 0.96575 1.36822 0.85115 0.91124 1.24728 0.95729 1.01789 0.98150 1.69653 1.01599 1.51246 1.35291 0.86210 0.77204 0.77569 0.85308 1.21648 1.21745 1.20711 0.93542 0.91888 0.90823 0.92010 0.93109 0.92926 0.90694 0.90070 0.81406 0.85346 0.85269 0.84631 0.84456 0.89861 0.90257 0.77097 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.11 37.16 0.26 -1.80 16 2 C -0.09 -1.41 1.03 -153.10 -0.16 -1.57 16 3 C -0.13 -1.86 8.24 37.16 0.31 -1.55 16 4 C 0.12 1.80 6.15 -2.32 -0.01 1.78 16 5 N -0.60 -10.06 3.32 -170.60 -0.57 -10.62 16 6 C 0.61 10.41 7.89 -12.72 -0.10 10.31 16 7 O -0.53 -9.86 17.09 5.23 0.09 -9.77 16 8 C -0.01 -0.14 6.93 -36.91 -0.26 -0.40 16 9 C -0.12 -1.70 10.81 -37.24 -0.40 -2.10 16 10 C -0.14 -1.85 6.38 -105.19 -0.67 -2.53 16 11 C -0.06 -0.64 10.06 -39.62 -0.40 -1.04 16 12 C -0.14 -1.23 9.98 -39.94 -0.40 -1.62 16 13 C -0.09 -0.81 10.01 -39.52 -0.40 -1.20 16 14 C -0.11 -1.25 10.07 -39.45 -0.40 -1.65 16 15 C 0.07 0.95 7.41 -38.35 -0.28 0.66 16 16 O -0.17 -2.75 7.64 2.79 0.02 -2.73 16 17 C 0.07 1.27 6.40 -2.41 -0.02 1.25 16 18 C 0.18 3.34 3.35 -66.53 -0.22 3.12 16 19 H 0.06 1.26 7.66 -51.93 -0.40 0.87 16 20 N -0.71 -16.50 4.60 -52.07 -0.24 -16.74 16 21 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 25 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.08 6.87 -51.93 -0.36 0.72 16 31 H 0.07 1.32 7.84 -51.93 -0.41 0.92 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.10 7.85 -51.93 -0.41 0.70 16 36 H 0.08 1.19 7.60 -51.93 -0.39 0.79 16 37 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.08 1.52 5.50 -51.93 -0.29 1.23 16 43 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 44 H 0.39 9.44 5.09 -40.82 -0.21 9.23 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -30.21 369.31 -9.04 -39.26 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.23 Total: 9.70 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.39 Total: -5.23 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.08 Total: -53.31 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.11 Total: -12.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.21 -9.04 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.122 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds