Wall clock time and date at job start Tue Mar 31 2020 15:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 110.30168 * 2 1 4 4 C 1.54388 * 110.34030 * 237.83061 * 2 1 3 5 5 N 1.48312 * 104.53367 * 217.33168 * 4 2 1 6 6 C 1.34778 * 127.77278 * 219.51755 * 5 4 2 7 7 O 1.21655 * 119.99662 * 359.90512 * 6 5 4 8 8 C 1.46976 * 120.00239 * 179.91150 * 6 5 4 9 9 C 1.35811 * 125.13125 * 179.71864 * 8 6 5 10 10 C 1.46246 * 106.07890 * 179.86012 * 9 8 6 11 11 C 1.39704 * 134.18812 * 180.12438 * 10 9 8 12 12 C 1.36624 * 119.70526 * 180.30194 * 11 10 9 13 13 C 1.38836 * 120.44554 * 359.97052 * 12 11 10 14 14 C 1.37790 * 120.74540 * 0.04986 * 13 12 11 15 15 C 1.39024 * 119.85591 * 359.95473 * 14 13 12 16 16 O 1.34715 * 133.24680 * 180.02562 * 15 14 13 17 17 C 1.48147 * 104.39569 * 39.46344 * 5 4 2 18 18 C 1.54283 * 110.34527 * 122.17868 * 2 1 3 19 19 H 1.09003 * 110.34282 * 237.74480 * 18 2 1 20 20 N 1.46500 * 110.33978 * 359.97438 * 18 2 1 21 21 C 1.36936 * 120.00148 * 204.99798 * 20 18 2 22 22 H 1.08002 * 119.99798 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00608 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00375 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46970 * 90.00463 * 25 23 21 27 27 H 1.48503 * 109.47146 * 210.00122 * 25 23 21 28 28 H 1.48501 * 109.47196 * 330.00139 * 25 23 21 29 29 H 1.08996 * 109.47351 * 59.29954 * 1 2 3 30 30 H 1.08999 * 109.46680 * 179.29653 * 1 2 3 31 31 H 1.08998 * 109.47007 * 299.29513 * 1 2 3 32 32 H 1.09004 * 109.46723 * 60.70627 * 3 2 1 33 33 H 1.08999 * 109.46937 * 180.70078 * 3 2 1 34 34 H 1.08997 * 109.47162 * 300.70280 * 3 2 1 35 35 H 1.08993 * 110.41105 * 336.03912 * 4 2 1 36 36 H 1.08999 * 110.41186 * 98.47662 * 4 2 1 37 37 H 1.08001 * 126.95837 * 359.97021 * 9 8 6 38 38 H 1.07991 * 120.14553 * 0.31874 * 11 10 9 39 39 H 1.08006 * 119.77523 * 180.02562 * 12 11 10 40 40 H 1.08005 * 119.62383 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.07458 * 179.97438 * 14 13 12 42 42 H 1.09000 * 110.41356 * 201.69193 * 17 5 4 43 43 H 1.09000 * 110.50931 * 79.30458 * 17 5 4 44 44 H 0.96998 * 120.00386 * 25.00343 * 20 18 2 45 45 H 0.96995 * 119.99416 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 6 2.0667 -0.7707 -1.2254 5 7 3.2664 -1.4822 -0.7214 6 6 4.4425 -1.6676 -1.3531 7 8 4.6068 -1.2255 -2.4745 8 6 5.5264 -2.4038 -0.6873 9 6 6.7470 -2.6551 -1.2270 10 6 7.4907 -3.4049 -0.2153 11 6 8.7768 -3.9471 -0.1550 12 6 9.1776 -4.6160 0.9669 13 6 8.3159 -4.7594 2.0460 14 6 7.0434 -4.2324 2.0061 15 6 6.6129 -3.5477 0.8754 16 8 5.4568 -2.9374 0.5502 17 6 2.8803 -1.9416 0.6331 18 6 2.0665 -0.7704 1.2244 19 1 2.7096 -0.1271 1.8249 20 7 0.9556 -1.2785 2.0330 21 6 1.1372 -1.5259 3.3675 22 1 2.0994 -1.3461 3.8240 23 6 0.0845 -2.0069 4.1340 24 7 -1.0883 -2.2255 3.5778 25 14 0.3322 -2.3437 5.9545 26 1 0.0128 -1.1197 6.7323 27 1 -0.5643 -3.4485 6.3800 28 1 1.7449 -2.7308 6.1986 29 1 -0.3634 0.5246 -0.8836 30 1 -0.3632 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 1.7154 1.9502 0.8963 33 1 3.1507 1.4192 -0.0126 34 1 1.6949 1.9578 -0.8836 35 1 1.3236 -1.4844 -1.5808 36 1 2.3400 -0.0774 -2.0207 37 1 7.0981 -2.3594 -2.2046 38 1 9.4513 -3.8378 -0.9912 39 1 10.1718 -5.0353 1.0150 40 1 8.6466 -5.2904 2.9264 41 1 6.3818 -4.3507 2.8516 42 1 3.7674 -2.1312 1.2375 43 1 2.2647 -2.8390 0.5710 44 1 0.0913 -1.4397 1.6232 45 1 -1.8237 -2.5619 4.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996582835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:54 Heat of formation + Delta-G solvation = 5.363668 kcal Electronic energy + Delta-G solvation = -28142.837075 eV Core-core repulsion = 24319.809368 eV Total energy + Delta-G solvation = -3823.027707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59998 -41.29116 -39.48187 -38.80709 -35.94292 -34.70858 -33.88665 -32.69769 -31.44462 -30.80422 -29.28980 -28.27084 -27.81856 -25.77679 -24.77656 -23.76801 -23.15772 -22.50675 -21.02566 -20.04066 -19.23539 -18.80582 -18.40559 -17.65864 -17.24508 -16.91913 -16.87623 -16.30009 -15.73184 -15.62220 -15.45464 -15.13871 -15.03221 -14.79838 -14.40533 -14.25583 -14.17378 -13.97752 -13.31482 -13.29263 -13.21333 -13.06699 -12.88121 -12.83575 -12.72922 -12.52808 -12.12888 -12.07036 -12.00076 -11.92549 -11.54718 -11.47328 -11.35773 -11.32833 -10.96447 -10.00815 -9.69154 -9.31375 -9.02482 -7.94338 -5.22948 -0.52859 0.32877 0.74431 1.30867 1.48872 1.49169 1.57390 1.83541 1.93155 2.56307 2.70181 3.08779 3.37246 3.54447 3.57319 3.71389 3.83392 3.88402 3.94710 4.05571 4.12857 4.28447 4.30175 4.36406 4.43518 4.50076 4.52406 4.60057 4.70766 4.76846 4.81922 4.87486 4.91184 4.98343 5.04555 5.10110 5.16294 5.26144 5.28257 5.35106 5.40032 5.45259 5.49158 5.55517 5.60044 6.01160 6.24228 6.28272 6.74991 7.36062 8.07415 8.33899 9.28488 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.004207 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.508245 B = 6653.590253 C = 9070.161094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.125 4.125 4 C 0.119 3.881 5 N -0.605 5.605 6 C 0.613 3.387 7 O -0.550 6.550 8 C -0.048 4.048 9 C -0.104 4.104 10 C -0.163 4.163 11 C -0.062 4.062 12 C -0.134 4.134 13 C -0.071 4.071 14 C -0.133 4.133 15 C 0.038 3.962 16 O -0.195 6.195 17 C 0.087 3.913 18 C 0.172 3.828 19 H 0.056 0.944 20 N -0.722 5.722 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.065 4.065 24 N -0.964 5.964 25 Si 0.966 3.034 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.271 1.271 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.707 -1.721 -8.112 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.083 4.083 3 C -0.183 4.183 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.402 3.598 7 O -0.432 6.432 8 C -0.098 4.098 9 C -0.125 4.125 10 C -0.164 4.164 11 C -0.080 4.080 12 C -0.152 4.152 13 C -0.089 4.089 14 C -0.151 4.151 15 C -0.009 4.009 16 O -0.098 6.098 17 C -0.038 4.038 18 C 0.061 3.939 19 H 0.074 0.926 20 N -0.365 5.365 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.258 4.258 24 N -0.614 5.614 25 Si 0.795 3.205 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.196 1.196 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.203 0.797 38 H 0.175 0.825 39 H 0.186 0.814 40 H 0.187 0.813 41 H 0.155 0.845 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.222 0.778 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.670 -1.495 -8.388 20.523 hybrid contribution -0.780 -0.414 1.029 1.356 sum 17.890 -1.909 -7.359 19.439 Atomic orbital electron populations 1.21575 0.92795 1.01444 1.02081 1.21732 0.96764 0.96257 0.93542 1.21753 1.00159 0.93676 1.02663 1.22646 0.85152 0.95702 0.96775 1.48917 1.12524 1.53811 1.18275 1.16414 0.79980 0.79137 0.84238 1.90819 1.81246 1.52634 1.18460 1.21850 0.97711 1.04766 0.85444 1.22980 0.90995 0.97949 1.00547 1.20169 0.97408 1.04798 0.93994 1.20772 0.92366 0.94988 0.99906 1.21286 1.01723 0.99664 0.92484 1.21496 0.90833 0.96453 1.00136 1.20398 0.98552 1.00610 0.95548 1.20414 0.84412 0.98168 0.97939 1.84191 1.35457 1.59527 1.30622 1.23522 0.99723 0.99313 0.81266 1.21236 0.89336 0.92080 0.91203 0.92615 1.42804 1.10208 1.77426 1.06023 1.19590 0.96369 1.35158 0.86463 0.90980 1.25428 0.95700 1.02760 1.01876 1.69793 1.02236 1.52977 1.36408 0.85259 0.77305 0.76996 0.80916 1.21517 1.22330 1.19637 0.90332 0.93562 0.93145 0.92608 0.93329 0.90406 0.90169 0.88697 0.79714 0.82519 0.81381 0.81311 0.84499 0.90330 0.92019 0.77822 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.11 71.98 0.51 -3.35 16 2 C -0.08 -2.56 1.03 -51.27 -0.05 -2.62 16 3 C -0.13 -3.43 8.24 71.98 0.59 -2.84 16 4 C 0.12 3.58 6.15 86.50 0.53 4.11 16 5 N -0.60 -20.50 3.32 -811.89 -2.69 -23.19 16 6 C 0.61 21.20 7.89 86.53 0.68 21.88 16 7 O -0.55 -20.34 17.09 -4.21 -0.07 -20.41 16 8 C -0.05 -1.56 6.93 24.00 0.17 -1.40 16 9 C -0.10 -2.79 10.81 23.79 0.26 -2.54 16 10 C -0.16 -4.03 6.38 -20.23 -0.13 -4.16 16 11 C -0.06 -1.05 10.06 22.25 0.22 -0.83 16 12 C -0.13 -1.77 9.98 22.04 0.22 -1.55 16 13 C -0.07 -1.09 10.01 22.31 0.22 -0.87 16 14 C -0.13 -3.01 10.07 22.35 0.23 -2.78 16 15 C 0.04 1.09 7.41 23.07 0.17 1.26 16 16 O -0.20 -6.54 7.64 -12.92 -0.10 -6.64 16 17 C 0.09 3.26 6.40 86.53 0.55 3.81 16 18 C 0.17 6.70 3.35 45.90 0.15 6.86 16 19 H 0.06 2.26 7.66 -2.39 -0.02 2.24 16 20 N -0.72 -34.49 4.60 -318.65 -1.46 -35.95 16 21 C -0.24 -13.03 9.96 84.03 0.84 -12.19 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 23 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 24 N -0.96 -56.78 13.06 21.65 0.28 -56.50 16 25 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.62 6.87 -2.39 -0.02 1.60 16 31 H 0.05 1.84 7.84 -2.39 -0.02 1.82 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.33 7.85 -2.39 -0.02 2.31 16 36 H 0.09 2.64 7.60 -2.39 -0.02 2.62 16 37 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.08 3.02 5.50 -2.39 -0.01 3.01 16 43 H 0.06 2.51 8.06 -2.39 -0.02 2.49 16 44 H 0.38 19.31 5.09 -92.71 -0.47 18.84 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -67.32 369.31 4.15 -63.17 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.54 Total: 32.84 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.64 Total: -0.30 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -3.88 Total: -115.64 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.17 Total: -27.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.32 4.15 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996582835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.532 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds