Wall clock time and date at job start Tue Mar 31 2020 15:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.29087 * 2 1 4 4 C 1.54005 * 110.32697 * 122.13380 * 2 1 3 5 5 N 1.47491 * 107.08084 * 117.58570 * 4 2 1 6 6 C 1.34773 * 127.02952 * 205.48158 * 5 4 2 7 7 O 1.21656 * 119.99578 * 174.33836 * 6 5 4 8 8 C 1.47078 * 120.00621 * 354.33464 * 6 5 4 9 9 C 1.36060 * 127.13654 * 353.10445 * 8 6 5 10 10 O 1.33804 * 109.84592 * 179.97438 * 9 8 6 11 11 C 1.34906 * 111.35514 * 359.97438 * 10 9 8 12 12 C 1.38965 * 133.11754 * 179.97438 * 11 10 9 13 13 C 1.37832 * 119.97683 * 180.02562 * 12 11 10 14 14 C 1.38683 * 120.65407 * 359.97438 * 13 12 11 15 15 C 1.37847 * 120.20436 * 0.04010 * 14 13 12 16 16 C 1.39112 * 119.62247 * 359.65345 * 15 14 13 17 17 C 1.48113 * 105.93219 * 25.44621 * 5 4 2 18 18 C 1.54620 * 110.32629 * 237.86731 * 2 1 3 19 19 H 1.09005 * 110.73451 * 337.59071 * 18 2 1 20 20 N 1.46487 * 110.74084 * 100.91814 * 18 2 1 21 21 C 1.36939 * 120.00494 * 204.99960 * 20 18 2 22 22 H 1.08008 * 119.99692 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00611 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00054 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99745 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47198 * 89.99969 * 25 23 21 27 27 H 1.48499 * 109.47349 * 210.00065 * 25 23 21 28 28 H 1.48502 * 109.47323 * 329.99899 * 25 23 21 29 29 H 1.08994 * 109.46956 * 60.69962 * 1 2 3 30 30 H 1.08996 * 109.47042 * 180.70549 * 1 2 3 31 31 H 1.09004 * 109.46686 * 300.69977 * 1 2 3 32 32 H 1.09000 * 109.46936 * 59.30194 * 3 2 1 33 33 H 1.08998 * 109.47394 * 179.30140 * 3 2 1 34 34 H 1.09000 * 109.47225 * 299.30342 * 3 2 1 35 35 H 1.08993 * 109.91022 * 236.94569 * 4 2 1 36 36 H 1.08995 * 109.91163 * 358.22965 * 4 2 1 37 37 H 1.07996 * 125.07556 * 0.02562 * 9 8 6 38 38 H 1.08005 * 120.01216 * 359.97438 * 12 11 10 39 39 H 1.08003 * 119.67959 * 180.02562 * 13 12 11 40 40 H 1.08006 * 119.90265 * 180.02562 * 14 13 12 41 41 H 1.07992 * 120.19334 * 180.02562 * 15 14 13 42 42 H 1.09008 * 110.66137 * 79.15171 * 17 5 4 43 43 H 1.09005 * 110.66286 * 202.26666 * 17 5 4 44 44 H 0.97001 * 120.00242 * 25.00632 * 20 18 2 45 45 H 0.96994 * 119.99602 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0650 -0.7681 1.2229 5 7 2.8277 -1.9217 0.7102 6 6 3.0613 -3.0872 1.3453 7 8 3.6217 -3.9960 0.7621 8 6 2.6390 -3.2605 2.7435 9 6 2.1243 -2.3101 3.5699 10 8 1.8591 -2.8447 4.7675 11 6 2.1768 -4.1554 4.8016 12 6 2.0916 -5.1280 5.7905 13 6 2.5035 -6.4165 5.5265 14 6 3.0043 -6.7572 4.2789 15 6 3.0967 -5.8060 3.2854 16 6 2.6779 -4.5039 3.5390 17 6 3.2835 -1.5376 -0.6457 18 6 2.0671 -0.7712 -1.2278 19 1 1.3174 -1.4669 -1.6048 20 7 2.4907 0.1571 -2.2789 21 6 2.5087 -0.2506 -3.5861 22 1 2.2103 -1.2565 -3.8421 23 6 2.9106 0.6289 -4.5820 24 7 2.9284 0.2368 -5.8383 25 14 3.4260 2.3689 -4.1393 26 1 4.8858 2.3990 -3.8686 27 1 3.1131 3.2805 -5.2690 28 1 2.6888 2.8105 -2.9281 29 1 -0.3633 0.5029 -0.8961 30 1 -0.3633 -1.0275 0.0127 31 1 -0.3633 0.5247 0.8837 32 1 1.6945 1.9577 0.8837 33 1 3.1504 1.4195 0.0125 34 1 1.7149 1.9503 -0.8962 35 1 2.7181 -0.1226 1.8101 36 1 1.2335 -1.1157 1.8358 37 1 1.9543 -1.2785 3.2993 38 1 1.7036 -4.8740 6.7659 39 1 2.4348 -7.1687 6.2985 40 1 3.3232 -7.7707 4.0851 41 1 3.4863 -6.0716 2.3139 42 1 4.1554 -0.8858 -0.5880 43 1 3.5026 -2.4227 -1.2430 44 1 2.7584 1.0606 -2.0490 45 1 3.2088 0.8514 -6.5343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996721182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:08 Heat of formation + Delta-G solvation = 28.094653 kcal Electronic energy + Delta-G solvation = -27989.133688 eV Core-core repulsion = 24167.091671 eV Total energy + Delta-G solvation = -3822.042017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82622 -40.08004 -38.18936 -37.94509 -34.50346 -33.25361 -32.99080 -31.22615 -30.65739 -29.92226 -27.88938 -27.27796 -26.54871 -24.31847 -23.67230 -22.66962 -22.46129 -21.26035 -19.50374 -18.92515 -18.05351 -17.83862 -17.02155 -16.57224 -16.17228 -15.87997 -15.74691 -15.05661 -14.56767 -14.42974 -14.21718 -14.05548 -13.94245 -13.74455 -13.35380 -13.04323 -12.96736 -12.77663 -12.54597 -12.19417 -12.14067 -11.99228 -11.75365 -11.45444 -11.30570 -11.21728 -11.09912 -10.73413 -10.66240 -10.41133 -10.35150 -10.05542 -9.86578 -9.61510 -9.10427 -8.93103 -8.59523 -8.45039 -7.38399 -5.84630 -3.22495 0.53129 1.05393 1.57639 2.36461 2.97125 3.18716 3.27989 3.32034 3.39190 3.56217 4.13106 4.27197 4.50310 4.53727 4.58626 4.69862 4.75146 4.85275 4.93315 5.03839 5.13220 5.18699 5.26344 5.33416 5.41088 5.49253 5.51214 5.62559 5.71207 5.78085 5.86644 5.92062 5.94493 6.04328 6.10288 6.11079 6.14592 6.21629 6.29756 6.33592 6.39540 6.44604 6.47161 6.74737 6.80263 7.64082 7.90910 8.24334 8.34005 9.10757 9.82119 10.00140 11.33232 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.002912 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.427599 B = 9612.714630 C =10352.743762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.097 3.903 5 N -0.613 5.613 6 C 0.601 3.399 7 O -0.535 6.535 8 C -0.216 4.216 9 C 0.050 3.950 10 O -0.185 6.185 11 C 0.045 3.955 12 C -0.108 4.108 13 C -0.094 4.094 14 C -0.135 4.135 15 C -0.059 4.059 16 C -0.092 4.092 17 C 0.084 3.916 18 C 0.185 3.815 19 H 0.075 0.925 20 N -0.736 5.736 21 C -0.252 4.252 22 H 0.092 0.908 23 C 0.010 3.990 24 N -0.929 5.929 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.224 0.776 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.367 0.633 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -5.535 25.355 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.026 4.026 5 N -0.347 5.347 6 C 0.391 3.609 7 O -0.413 6.413 8 C -0.221 4.221 9 C -0.018 4.018 10 O -0.084 6.084 11 C -0.002 4.002 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.153 4.153 15 C -0.077 4.077 16 C -0.094 4.094 17 C -0.041 4.041 18 C 0.073 3.927 19 H 0.093 0.907 20 N -0.379 5.379 21 C -0.381 4.381 22 H 0.110 0.890 23 C -0.187 4.187 24 N -0.575 5.575 25 Si 0.710 3.290 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.240 0.760 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.203 0.797 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.544 -6.088 25.048 26.019 hybrid contribution 0.511 1.404 0.016 1.494 sum -3.033 -4.685 25.064 25.678 Atomic orbital electron populations 1.21827 0.93331 1.01823 1.02129 1.21747 0.96405 0.95903 0.95050 1.21857 1.01044 0.94801 1.02278 1.22594 0.95141 0.87669 0.97242 1.48584 1.53137 1.14025 1.18926 1.16651 0.79169 0.81131 0.83992 1.90793 1.43589 1.39713 1.67205 1.21040 1.11187 0.93784 0.96049 1.25206 0.95625 0.99291 0.81648 1.83865 1.69319 1.21811 1.33452 1.19620 1.01783 0.82681 0.96094 1.19915 1.04343 0.90649 0.97732 1.20946 0.97987 0.94908 0.97371 1.21131 1.01288 0.99739 0.93120 1.20768 0.96352 0.90325 1.00207 1.19442 1.03140 0.94218 0.92581 1.23621 0.99589 1.00498 0.80387 1.21269 0.93339 0.91149 0.86954 0.90670 1.42869 1.80166 1.11446 1.03413 1.19101 1.38538 0.99277 0.81218 0.89020 1.24672 1.01167 0.97740 0.95107 1.69696 1.53340 1.35472 0.99030 0.86648 0.78777 0.86151 0.77420 1.20942 1.21588 1.20188 0.91411 0.92607 0.92945 0.92710 0.92375 0.90946 0.91154 0.90673 0.76042 0.84933 0.84663 0.85034 0.84349 0.91044 0.89692 0.79676 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.22 37.16 0.31 -1.30 16 2 C -0.09 -1.20 0.95 -153.13 -0.15 -1.34 16 3 C -0.14 -1.85 7.04 37.16 0.26 -1.59 16 4 C 0.10 1.10 4.55 -2.98 -0.01 1.09 16 5 N -0.61 -9.24 3.29 -171.04 -0.56 -9.80 16 6 C 0.60 9.90 7.87 -12.68 -0.10 9.80 16 7 O -0.53 -10.70 16.52 5.23 0.09 -10.61 16 8 C -0.22 -2.97 6.24 -103.25 -0.64 -3.61 16 9 C 0.05 0.52 10.45 29.95 0.31 0.84 16 10 O -0.18 -2.05 10.53 5.35 0.06 -1.99 16 11 C 0.04 0.52 7.39 -38.56 -0.28 0.24 16 12 C -0.11 -0.98 10.06 -39.46 -0.40 -1.38 16 13 C -0.09 -0.75 10.01 -39.57 -0.40 -1.15 16 14 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 15 C -0.06 -0.73 9.89 -39.40 -0.39 -1.12 16 16 C -0.09 -1.25 6.29 -104.97 -0.66 -1.91 16 17 C 0.08 1.48 6.80 -2.04 -0.01 1.46 16 18 C 0.18 3.32 3.16 -65.97 -0.21 3.11 16 19 H 0.08 1.46 7.82 -51.93 -0.41 1.05 16 20 N -0.74 -16.06 4.77 -51.53 -0.25 -16.31 16 21 C -0.25 -6.78 10.44 -15.06 -0.16 -6.93 16 22 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 24 N -0.93 -28.50 13.97 55.49 0.78 -27.72 16 25 Si 0.88 21.07 27.73 -169.99 -4.71 16.36 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 34 H 0.07 1.11 6.90 -51.93 -0.36 0.75 16 35 H 0.07 0.66 7.39 -51.93 -0.38 0.27 16 36 H 0.08 0.69 5.45 -51.93 -0.28 0.41 16 37 H 0.22 1.58 4.86 -52.49 -0.26 1.33 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.14 1.84 7.57 -52.49 -0.40 1.45 16 42 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 43 H 0.08 1.70 7.81 -51.93 -0.41 1.30 16 44 H 0.37 7.73 2.99 -40.82 -0.12 7.61 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -33.44 362.49 -8.17 -41.61 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.00 Total: 8.28 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.02 Total: -5.28 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.03 Total: -53.83 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.14 Total: -12.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.44 -8.17 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996721182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.702 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds