Wall clock time and date at job start Tue Mar 31 2020 16:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47281 * 2 1 4 4 C 1.38682 * 119.89688 * 89.99717 * 3 2 1 5 5 C 1.37846 * 120.65476 * 179.97438 * 4 3 2 6 6 C 1.38965 * 119.97109 * 0.28221 * 5 4 3 7 7 O 1.34908 * 133.11614 * 180.35705 * 6 5 4 8 8 C 1.33803 * 111.35470 * 179.56284 * 7 6 5 9 9 C 1.36057 * 109.84906 * 359.78540 * 8 7 6 10 10 C 1.47077 * 127.13920 * 180.02562 * 9 8 7 11 11 O 1.21650 * 119.99857 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00535 * 359.97041 * 10 9 8 13 13 C 1.46494 * 120.00354 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88618 * 328.88561 * 13 12 10 15 15 C 1.55158 * 111.00582 * 204.99862 * 13 12 10 16 16 C 1.54320 * 102.94281 * 277.42869 * 15 13 12 17 17 N 1.47019 * 107.27319 * 337.80748 * 16 15 13 18 18 C 1.36937 * 125.64839 * 178.98366 * 17 16 15 19 19 H 1.07993 * 120.00195 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99866 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47318 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47145 * 120.00332 * 22 20 18 25 25 H 1.48501 * 109.47199 * 240.00096 * 22 20 18 26 26 C 1.47427 * 108.70197 * 358.93885 * 17 16 15 27 27 C 1.40236 * 119.25430 * 359.49523 * 6 5 4 28 28 C 1.37841 * 119.90130 * 269.97809 * 3 2 1 29 29 H 1.08997 * 109.47515 * 300.00046 * 1 2 3 30 30 H 1.09006 * 109.46933 * 60.00127 * 1 2 3 31 31 H 1.09004 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47257 * 239.99969 * 2 1 3 33 33 H 1.09000 * 109.46938 * 120.00341 * 2 1 3 34 34 H 1.08001 * 119.67474 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.01118 * 179.97438 * 5 4 3 36 36 H 1.07998 * 125.07854 * 179.79858 * 8 7 6 37 37 H 0.97008 * 119.99546 * 0.02562 * 12 10 9 38 38 H 1.09000 * 110.71692 * 35.79927 * 15 13 12 39 39 H 1.08998 * 110.71877 * 159.06245 * 15 13 12 40 40 H 1.09007 * 109.87979 * 97.22358 * 16 15 13 41 41 H 1.08999 * 109.88134 * 218.38277 * 16 15 13 42 42 H 0.96999 * 120.00090 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.36764 * 265.28887 * 26 17 16 44 44 H 1.08997 * 110.36280 * 142.96652 * 26 17 16 45 45 H 1.08002 * 120.18236 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.2023 5 6 2.7227 3.3718 1.2205 6 6 2.9544 4.0431 0.0260 7 8 3.3986 5.2836 -0.2635 8 6 3.4684 5.4801 -1.5851 9 6 3.0707 4.3563 -2.2409 10 6 3.0005 4.1553 -3.6962 11 8 2.6237 3.0894 -4.1455 12 7 3.3534 5.1519 -4.5320 13 6 3.2839 4.9515 -5.9815 14 1 3.4741 3.9097 -6.2393 15 6 4.2675 5.8962 -6.7214 16 6 3.4773 7.2188 -6.8082 17 7 2.0514 6.8847 -6.6788 18 6 1.0175 7.7826 -6.6849 19 1 0.0000 7.4353 -6.5835 20 6 1.2774 9.1393 -6.8215 21 7 2.5175 9.5627 -6.9457 22 14 -0.1330 10.3642 -6.8306 23 1 -1.4196 9.6387 -6.6772 24 1 0.0335 11.3192 -5.7056 25 1 -0.1340 11.1084 -8.1156 26 6 1.9189 5.4227 -6.5424 27 6 2.7252 3.3801 -1.1883 28 6 2.2619 2.0685 -1.1949 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0800 1.5570 2.1335 35 1 2.8982 3.8696 2.1628 36 1 3.7923 6.3942 -2.0605 37 1 3.6541 6.0018 -4.1737 38 1 5.1818 6.0303 -6.1433 39 1 4.4924 5.5152 -7.7176 40 1 3.7772 7.8837 -5.9981 41 1 3.6601 7.6974 -7.7702 42 1 2.6990 10.5107 -7.0416 43 1 1.7302 4.9667 -7.5142 44 1 1.1175 5.1779 -5.8455 45 1 2.0830 1.5604 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014470628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:02 Heat of formation + Delta-G solvation = 11.310259 kcal Electronic energy + Delta-G solvation = -27425.255262 eV Core-core repulsion = 23602.485418 eV Total energy + Delta-G solvation = -3822.769843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.67029 -39.38792 -38.57939 -37.17865 -33.88341 -33.79500 -32.96235 -31.76492 -29.82005 -29.20797 -29.01531 -27.25283 -24.70817 -24.36761 -23.36135 -23.00380 -21.22080 -20.31300 -20.07032 -19.76334 -18.05648 -17.31228 -16.87422 -16.37730 -15.93080 -15.83845 -15.37433 -14.70800 -14.65953 -14.48023 -14.25165 -13.88173 -13.77168 -13.64738 -13.40066 -13.13210 -12.86894 -12.68021 -12.45475 -11.96190 -11.84288 -11.79006 -11.48858 -11.25011 -10.99559 -10.96101 -10.93167 -10.75405 -10.40262 -10.21728 -10.13516 -9.98183 -9.73049 -9.70649 -8.80470 -8.63521 -8.58115 -8.31663 -6.85412 -5.75479 -3.07976 0.67228 1.14160 1.72144 2.53077 3.30993 3.37065 3.40253 3.44047 3.45862 3.68242 4.24902 4.47416 4.49769 4.56374 4.70503 4.86612 5.09134 5.11411 5.16297 5.19926 5.26388 5.33831 5.43875 5.45285 5.47746 5.64890 5.66803 5.74165 5.77522 5.80662 6.00052 6.02671 6.03716 6.16665 6.23403 6.33815 6.41239 6.46224 6.46473 6.49398 6.67320 6.93208 7.00523 7.49585 7.52511 7.76247 7.82604 8.21189 8.47364 9.18991 9.78695 10.44232 11.36485 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002862 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.910953 B = 9781.655806 C =10064.759155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.093 4.093 5 C -0.104 4.104 6 C 0.040 3.960 7 O -0.184 6.184 8 C 0.068 3.932 9 C -0.223 4.223 10 C 0.587 3.413 11 O -0.543 6.543 12 N -0.699 5.699 13 C 0.129 3.871 14 H 0.092 0.908 15 C -0.154 4.154 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.125 3.875 27 C -0.086 4.086 28 C -0.057 4.057 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.219 0.781 37 H 0.400 0.600 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -14.565 15.620 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.006 4.006 7 O -0.083 6.083 8 C 0.000 4.000 9 C -0.228 4.228 10 C 0.374 3.626 11 O -0.422 6.422 12 N -0.349 5.349 13 C 0.024 3.976 14 H 0.110 0.890 15 C -0.193 4.193 16 C 0.050 3.950 17 N -0.331 5.331 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.003 4.003 27 C -0.088 4.088 28 C -0.075 4.075 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.235 0.765 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.523 -14.914 15.462 21.770 hybrid contribution -0.582 1.399 -0.089 1.518 sum 2.941 -13.514 15.373 20.679 Atomic orbital electron populations 1.21772 0.94657 1.01721 1.02437 1.20495 0.96244 0.92078 1.02966 1.19814 1.00800 0.96857 0.92471 1.20772 0.99069 0.93268 0.97975 1.19871 1.03544 0.94313 0.94470 1.19590 1.02026 0.83410 0.95600 1.83848 1.69273 1.30570 1.24624 1.24578 0.96468 0.99189 0.79770 1.21075 1.12372 0.95141 0.94198 1.17035 0.77423 0.84083 0.84070 1.90746 1.47521 1.26215 1.77748 1.45675 1.66733 1.15646 1.06807 1.22164 0.97654 0.99449 0.78330 0.88992 1.23237 0.97812 0.98599 0.99631 1.21178 0.82453 0.90185 1.01134 1.44495 1.02675 0.99788 1.86153 1.19109 0.86750 0.86712 1.42600 0.90495 1.24771 0.96599 0.96809 1.02324 1.69957 1.16766 1.13666 1.56794 0.86058 0.81252 0.81334 0.77228 1.20548 1.21804 1.21770 1.21952 0.94583 0.86483 0.97237 1.19399 1.03208 0.95244 0.90905 1.20561 0.96265 0.92119 0.98562 0.92585 0.92287 0.92377 0.90783 0.90967 0.84851 0.84953 0.76487 0.76584 0.91557 0.90828 0.93636 0.93705 0.93858 0.95344 0.93898 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.10 -1.06 5.13 -104.60 -0.54 -1.59 16 4 C -0.09 -0.87 9.66 -39.56 -0.38 -1.25 16 5 C -0.10 -1.08 10.06 -39.46 -0.40 -1.48 16 6 C 0.04 0.53 7.39 -38.56 -0.28 0.24 16 7 O -0.18 -2.35 10.53 5.34 0.06 -2.30 16 8 C 0.07 0.83 11.52 29.95 0.34 1.18 16 9 C -0.22 -3.34 6.31 -103.25 -0.65 -3.99 16 10 C 0.59 10.01 7.80 -12.68 -0.10 9.91 16 11 O -0.54 -10.74 15.92 5.23 0.08 -10.66 16 12 N -0.70 -11.39 5.18 -52.91 -0.27 -11.67 16 13 C 0.13 2.28 3.43 -65.78 -0.23 2.05 16 14 H 0.09 1.58 7.54 -51.93 -0.39 1.19 16 15 C -0.15 -2.65 6.55 -24.90 -0.16 -2.81 16 16 C 0.18 3.97 5.36 -3.07 -0.02 3.95 16 17 N -0.60 -14.92 3.39 -170.08 -0.58 -15.49 16 18 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.23 10.31 55.49 0.57 -25.66 16 22 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 2.63 6.93 -2.53 -0.02 2.61 16 27 C -0.09 -1.26 6.29 -104.98 -0.66 -1.92 16 28 C -0.06 -0.77 9.53 -39.41 -0.38 -1.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.22 1.91 7.41 -52.49 -0.39 1.52 16 37 H 0.40 5.92 7.59 -40.82 -0.31 5.61 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.11 7.38 -51.92 -0.38 0.73 16 41 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.14 1.96 7.54 -52.49 -0.40 1.56 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -32.69 374.27 -9.49 -42.18 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.45 Total: 3.56 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.52 Total: -2.50 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.28 Total: -52.82 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.14 Total: -12.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.69 -9.49 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014470628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.490 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds