Wall clock time and date at job start Tue Mar 31 2020 16:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47281 * 2 1 4 4 C 1.38682 * 119.89688 * 89.99717 * 3 2 1 5 5 C 1.37846 * 120.65476 * 179.97438 * 4 3 2 6 6 C 1.38965 * 119.97109 * 0.28221 * 5 4 3 7 7 O 1.34908 * 133.11614 * 180.35705 * 6 5 4 8 8 C 1.33803 * 111.35470 * 179.56284 * 7 6 5 9 9 C 1.36057 * 109.84906 * 359.78540 * 8 7 6 10 10 C 1.47077 * 127.13920 * 180.02562 * 9 8 7 11 11 O 1.21650 * 119.99857 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00535 * 359.97041 * 10 9 8 13 13 C 1.46494 * 120.00354 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.88618 * 328.88561 * 13 12 10 15 15 C 1.55158 * 111.00582 * 204.99862 * 13 12 10 16 16 C 1.54320 * 102.94281 * 277.42869 * 15 13 12 17 17 N 1.47019 * 107.27319 * 337.80748 * 16 15 13 18 18 C 1.36937 * 125.64839 * 178.98366 * 17 16 15 19 19 H 1.07993 * 120.00195 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99866 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47318 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47145 * 120.00332 * 22 20 18 25 25 H 1.48501 * 109.47199 * 240.00096 * 22 20 18 26 26 C 1.47427 * 108.70197 * 358.93885 * 17 16 15 27 27 C 1.40236 * 119.25430 * 359.49523 * 6 5 4 28 28 C 1.37841 * 119.90130 * 269.97809 * 3 2 1 29 29 H 1.08997 * 109.47515 * 300.00046 * 1 2 3 30 30 H 1.09006 * 109.46933 * 60.00127 * 1 2 3 31 31 H 1.09004 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47257 * 239.99969 * 2 1 3 33 33 H 1.09000 * 109.46938 * 120.00341 * 2 1 3 34 34 H 1.08001 * 119.67474 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.01118 * 179.97438 * 5 4 3 36 36 H 1.07998 * 125.07854 * 179.79858 * 8 7 6 37 37 H 0.97008 * 119.99546 * 0.02562 * 12 10 9 38 38 H 1.09000 * 110.71692 * 35.79927 * 15 13 12 39 39 H 1.08998 * 110.71877 * 159.06245 * 15 13 12 40 40 H 1.09007 * 109.87979 * 97.22358 * 16 15 13 41 41 H 1.08999 * 109.88134 * 218.38277 * 16 15 13 42 42 H 0.96999 * 120.00090 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.36764 * 265.28887 * 26 17 16 44 44 H 1.08997 * 110.36280 * 142.96652 * 26 17 16 45 45 H 1.08002 * 120.18236 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.2023 5 6 2.7227 3.3718 1.2205 6 6 2.9544 4.0431 0.0260 7 8 3.3986 5.2836 -0.2635 8 6 3.4684 5.4801 -1.5851 9 6 3.0707 4.3563 -2.2409 10 6 3.0005 4.1553 -3.6962 11 8 2.6237 3.0894 -4.1455 12 7 3.3534 5.1519 -4.5320 13 6 3.2839 4.9515 -5.9815 14 1 3.4741 3.9097 -6.2393 15 6 4.2675 5.8962 -6.7214 16 6 3.4773 7.2188 -6.8082 17 7 2.0514 6.8847 -6.6788 18 6 1.0175 7.7826 -6.6849 19 1 0.0000 7.4353 -6.5835 20 6 1.2774 9.1393 -6.8215 21 7 2.5175 9.5627 -6.9457 22 14 -0.1330 10.3642 -6.8306 23 1 -1.4196 9.6387 -6.6772 24 1 0.0335 11.3192 -5.7056 25 1 -0.1340 11.1084 -8.1156 26 6 1.9189 5.4227 -6.5424 27 6 2.7252 3.3801 -1.1883 28 6 2.2619 2.0685 -1.1949 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0800 1.5570 2.1335 35 1 2.8982 3.8696 2.1628 36 1 3.7923 6.3942 -2.0605 37 1 3.6541 6.0018 -4.1737 38 1 5.1818 6.0303 -6.1433 39 1 4.4924 5.5152 -7.7176 40 1 3.7772 7.8837 -5.9981 41 1 3.6601 7.6974 -7.7702 42 1 2.6990 10.5107 -7.0416 43 1 1.7302 4.9667 -7.5142 44 1 1.1175 5.1779 -5.8455 45 1 2.0830 1.5604 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014470628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:01 Heat of formation + Delta-G solvation = -8.124028 kcal Electronic energy + Delta-G solvation = -27426.097996 eV Core-core repulsion = 23602.485418 eV Total energy + Delta-G solvation = -3823.612577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.63984 -40.80471 -39.42630 -38.80632 -35.46424 -34.63452 -34.17574 -33.36006 -31.18030 -30.52152 -29.95800 -28.91024 -26.53647 -25.32833 -24.53869 -23.86039 -22.10489 -21.99088 -21.51738 -21.13090 -19.23433 -18.74091 -18.24191 -17.39048 -17.32078 -16.87834 -16.67840 -16.35480 -15.93774 -15.57727 -15.52337 -15.35552 -15.09248 -14.56790 -14.38482 -14.17498 -14.04714 -13.84778 -13.80609 -13.56698 -13.43816 -12.90955 -12.83567 -12.57365 -12.32256 -12.26966 -12.11034 -12.00212 -11.94133 -11.82867 -11.71883 -11.60569 -11.23145 -11.11611 -10.73196 -10.15009 -9.51464 -9.28663 -8.86611 -7.85944 -5.19838 -0.27202 0.24207 0.69091 1.45062 1.46191 1.55880 1.60169 2.07700 2.20647 2.48373 2.68359 3.32951 3.34673 3.46542 3.66609 3.75951 3.79652 3.85720 4.06266 4.11811 4.19916 4.28852 4.31428 4.36781 4.50973 4.52438 4.67728 4.72110 4.74101 4.80697 4.88536 4.97248 5.01049 5.03904 5.09300 5.15135 5.19720 5.30973 5.38518 5.44301 5.52253 5.57028 5.62750 5.68073 5.77044 6.01947 6.19650 6.52205 7.11793 7.15828 7.76376 8.40535 9.23972 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002862 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.910953 B = 9781.655806 C =10064.759155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.087 4.087 5 C -0.097 4.097 6 C 0.020 3.980 7 O -0.183 6.183 8 C 0.095 3.905 9 C -0.262 4.262 10 C 0.588 3.412 11 O -0.579 6.579 12 N -0.694 5.694 13 C 0.142 3.858 14 H 0.103 0.897 15 C -0.133 4.133 16 C 0.183 3.817 17 N -0.620 5.620 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.057 4.057 21 N -0.944 5.944 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.122 3.878 27 C -0.113 4.113 28 C -0.089 4.089 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.250 0.750 37 H 0.408 0.592 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.010 0.990 42 H 0.248 0.752 43 H 0.032 0.968 44 H 0.025 0.975 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -15.186 18.124 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.026 4.026 7 O -0.082 6.082 8 C 0.026 3.974 9 C -0.267 4.267 10 C 0.378 3.622 11 O -0.460 6.460 12 N -0.344 5.344 13 C 0.036 3.964 14 H 0.121 0.879 15 C -0.171 4.171 16 C 0.058 3.942 17 N -0.347 5.347 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.219 1.219 26 C -0.004 4.004 27 C -0.114 4.114 28 C -0.108 4.108 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.191 0.809 35 H 0.181 0.819 36 H 0.266 0.734 37 H 0.243 0.757 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.043 0.957 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.910 -15.548 17.983 24.091 hybrid contribution -0.746 1.530 -0.818 1.888 sum 3.164 -14.018 17.164 22.386 Atomic orbital electron populations 1.21759 0.94360 1.02579 1.01720 1.20578 0.96383 0.90708 1.04068 1.20160 0.99099 0.97832 0.92016 1.21241 0.97451 0.92924 0.98828 1.20367 1.01960 0.94554 0.94670 1.19972 1.03189 0.83432 0.96053 1.83855 1.69060 1.30627 1.24618 1.25099 0.93693 0.99083 0.79504 1.20994 1.15601 0.96967 0.93144 1.17329 0.76390 0.83488 0.85040 1.90716 1.49181 1.27592 1.78535 1.45598 1.66616 1.15960 1.06224 1.21979 0.95401 0.99909 0.79084 0.87918 1.23096 0.97820 0.95037 1.01181 1.20984 0.82228 0.92583 0.98357 1.44710 1.03070 1.00924 1.85999 1.19354 0.87429 0.87673 1.42497 0.91126 1.25487 0.98847 0.98252 1.02465 1.70138 1.18186 1.13582 1.57390 0.85103 0.78896 0.79008 0.76856 1.19872 1.21544 1.21915 1.22052 0.96290 0.84882 0.97198 1.19660 1.04218 0.95892 0.91653 1.20563 0.98776 0.92426 0.98992 0.91791 0.94494 0.90766 0.91363 0.88188 0.80871 0.81929 0.73404 0.75655 0.88525 0.89061 0.95718 0.97186 0.94271 0.94992 0.95679 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.39 16 2 C -0.08 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.83 5.13 -19.85 -0.10 -1.93 16 4 C -0.09 -1.36 9.66 22.28 0.22 -1.15 16 5 C -0.10 -1.77 10.06 22.35 0.22 -1.54 16 6 C 0.02 0.49 7.39 22.93 0.17 0.66 16 7 O -0.18 -4.43 10.53 -3.79 -0.04 -4.47 16 8 C 0.09 2.23 11.52 67.31 0.78 3.00 16 9 C -0.26 -7.96 6.31 -18.98 -0.12 -8.08 16 10 C 0.59 20.53 7.80 86.56 0.68 21.20 16 11 O -0.58 -23.83 15.92 -4.19 -0.07 -23.90 16 12 N -0.69 -22.47 5.18 -439.55 -2.28 -24.74 16 13 C 0.14 4.93 3.43 46.39 0.16 5.09 16 14 H 0.10 3.44 7.54 -2.39 -0.02 3.42 16 15 C -0.13 -4.38 6.55 31.78 0.21 -4.17 16 16 C 0.18 8.38 5.36 86.73 0.47 8.84 16 17 N -0.62 -31.15 3.39 -692.01 -2.35 -33.50 16 18 C -0.24 -13.44 10.28 84.03 0.86 -12.58 16 19 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 21 N -0.94 -54.43 10.31 21.65 0.22 -54.21 16 22 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.12 5.24 6.93 86.86 0.60 5.84 16 27 C -0.11 -3.37 6.29 -20.09 -0.13 -3.50 16 28 C -0.09 -2.50 9.53 22.38 0.21 -2.29 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 1.09 8.08 -2.38 -0.02 1.07 16 33 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.25 3.89 7.41 -2.91 -0.02 3.87 16 37 H 0.41 11.77 7.59 -92.70 -0.70 11.06 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.02 1.22 7.38 -2.38 -0.02 1.20 16 41 H 0.01 0.52 7.50 -2.39 -0.02 0.50 16 42 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 3.60 7.54 -2.91 -0.02 3.57 16 Total: -1.00 -73.76 374.27 3.41 -70.35 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.31 Total: 18.72 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.58 Total: 4.29 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.40 Total: -112.46 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.11 Total: -28.37 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.76 3.41 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014470628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.230 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds