Wall clock time and date at job start Tue Mar 31 2020 16:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47725 * 2 1 4 4 C 1.38690 * 119.89682 * 89.99624 * 3 2 1 5 5 C 1.37844 * 120.65321 * 180.02562 * 4 3 2 6 6 C 1.38966 * 119.97064 * 359.97438 * 5 4 3 7 7 O 1.34914 * 133.11424 * 179.97438 * 6 5 4 8 8 C 1.33802 * 111.34960 * 180.02562 * 7 6 5 9 9 C 1.36048 * 109.85576 * 359.97438 * 8 7 6 10 10 C 1.47080 * 127.14390 * 179.97438 * 9 8 7 11 11 O 1.21648 * 120.00116 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00009 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00005 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.77956 * 31.76219 * 13 12 10 15 15 C 1.55161 * 110.71706 * 155.00170 * 13 12 10 16 16 C 1.54915 * 101.57651 * 153.86684 * 15 13 12 17 17 N 1.47423 * 104.83394 * 322.98859 * 16 15 13 18 18 C 1.36937 * 125.64616 * 204.08146 * 17 16 15 19 19 H 1.08006 * 119.99613 * 169.99493 * 18 17 16 20 20 C 1.38804 * 120.00391 * 350.00343 * 18 17 16 21 21 N 1.31624 * 120.00023 * 350.41582 * 20 18 17 22 22 Si 1.86796 * 120.00327 * 170.41940 * 20 18 17 23 23 H 1.48502 * 109.47437 * 94.13633 * 22 20 18 24 24 H 1.48507 * 109.47291 * 214.14010 * 22 20 18 25 25 H 1.48503 * 109.47103 * 334.13586 * 22 20 18 26 26 C 1.47021 * 108.70154 * 24.13080 * 17 16 15 27 27 C 1.40234 * 119.26176 * 0.26343 * 6 5 4 28 28 C 1.37845 * 119.89879 * 269.98447 * 3 2 1 29 29 H 1.09000 * 109.47415 * 59.99485 * 1 2 3 30 30 H 1.08995 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46845 * 299.99787 * 1 2 3 32 32 H 1.09000 * 109.47015 * 239.99685 * 2 1 3 33 33 H 1.09000 * 109.47415 * 120.00515 * 2 1 3 34 34 H 1.07993 * 119.67640 * 0.02562 * 4 3 2 35 35 H 1.07990 * 120.01548 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.07334 * 180.02562 * 8 7 6 37 37 H 0.96998 * 120.00183 * 0.02562 * 12 10 9 38 38 H 1.08995 * 111.00228 * 271.93477 * 15 13 12 39 39 H 1.08992 * 111.00574 * 35.79241 * 15 13 12 40 40 H 1.09002 * 110.36649 * 81.83041 * 16 15 13 41 41 H 1.09000 * 110.36287 * 204.15199 * 16 15 13 42 42 H 0.96994 * 120.00230 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.88157 * 239.51653 * 26 17 16 44 44 H 1.09004 * 109.88164 * 118.36104 * 26 17 16 45 45 H 1.07990 * 120.18523 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.2023 5 6 2.7219 3.3721 1.2205 6 6 2.9587 4.0415 0.0260 7 8 3.3973 5.2841 -0.2634 8 6 3.4668 5.4807 -1.5851 9 6 3.0707 4.3564 -2.2409 10 6 2.9996 4.1556 -3.6962 11 8 2.6235 3.0896 -4.1455 12 7 3.3511 5.1528 -4.5320 13 6 3.2809 4.9526 -5.9816 14 1 2.4714 4.2695 -6.2388 15 6 3.1086 6.3089 -6.7152 16 6 3.7258 5.9935 -8.1007 17 7 4.8668 5.1057 -7.8123 18 6 5.9666 4.9348 -8.6101 19 1 6.8221 4.3888 -8.2407 20 6 5.9820 5.4635 -9.8935 21 7 4.8802 5.9620 -10.4132 22 14 7.5663 5.4675 -10.8830 23 1 7.6159 4.2579 -11.7431 24 1 7.6148 6.6830 -11.7349 25 1 8.7279 5.4649 -9.9578 26 6 4.6278 4.4332 -6.5270 27 6 2.7202 3.3819 -1.1883 28 6 2.2618 2.0684 -1.1950 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0808 1.5568 2.1335 35 1 2.8975 3.8699 2.1627 36 1 3.7899 6.3950 -2.0604 37 1 3.6513 6.0027 -4.1738 38 1 2.0550 6.5720 -6.8077 39 1 3.6643 7.0993 -6.2108 40 1 2.9986 5.4836 -8.7327 41 1 4.0699 6.9099 -8.5802 42 1 4.8909 6.3311 -11.3101 43 1 5.4286 4.6743 -5.8280 44 1 4.5760 3.3548 -6.6768 45 1 2.0829 1.5605 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014470634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:06 Heat of formation + Delta-G solvation = 11.799592 kcal Electronic energy + Delta-G solvation = -26949.011326 eV Core-core repulsion = 23126.262702 eV Total energy + Delta-G solvation = -3822.748624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.80014 -39.46707 -38.67214 -37.19430 -34.10606 -33.93187 -33.07661 -31.85360 -29.94031 -29.27223 -29.04044 -27.15923 -24.79947 -24.40274 -23.32209 -23.03599 -21.30078 -20.61869 -20.18797 -19.78116 -18.12600 -17.44980 -16.88831 -16.51576 -16.03429 -15.91162 -15.47011 -14.80207 -14.67837 -14.64741 -14.32037 -14.06411 -13.81251 -13.68450 -13.48044 -13.05642 -12.97682 -12.75935 -12.41184 -12.03105 -11.87273 -11.70368 -11.56430 -11.31290 -11.17745 -11.03986 -10.89007 -10.81884 -10.55892 -10.33587 -10.11081 -9.91973 -9.83254 -9.69225 -8.83786 -8.73787 -8.60529 -8.43780 -6.82019 -5.76277 -3.08875 0.54832 1.04347 1.59551 2.38959 3.19483 3.23347 3.39504 3.45148 3.47279 3.56306 4.10951 4.35975 4.47598 4.50499 4.58810 4.78395 5.00493 5.01320 5.05121 5.12275 5.18074 5.31991 5.39253 5.40571 5.48738 5.55707 5.61587 5.70098 5.74939 5.78244 5.91186 5.93299 5.95734 6.12309 6.14428 6.32244 6.33127 6.38403 6.42776 6.48058 6.74568 6.81623 6.97196 7.42993 7.53016 7.65147 7.75924 8.23173 8.33934 9.17789 9.79330 10.46037 11.37047 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.002339 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.364307 B =11969.732477 C =12439.445900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.104 4.104 6 C 0.041 3.959 7 O -0.184 6.184 8 C 0.062 3.938 9 C -0.221 4.221 10 C 0.584 3.416 11 O -0.533 6.533 12 N -0.712 5.712 13 C 0.133 3.867 14 H 0.096 0.904 15 C -0.151 4.151 16 C 0.174 3.826 17 N -0.602 5.602 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.128 3.872 27 C -0.088 4.088 28 C -0.057 4.057 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.217 0.783 37 H 0.395 0.605 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.028 0.972 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -3.199 25.076 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.006 4.006 7 O -0.084 6.084 8 C -0.006 4.006 9 C -0.225 4.225 10 C 0.371 3.629 11 O -0.410 6.410 12 N -0.362 5.362 13 C 0.029 3.971 14 H 0.114 0.886 15 C -0.190 4.190 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.001 3.999 27 C -0.090 4.090 28 C -0.074 4.074 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.234 0.766 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.931 -3.740 24.732 26.240 hybrid contribution 1.029 0.512 -0.612 1.302 sum -6.902 -3.228 24.120 25.295 Atomic orbital electron populations 1.21764 0.94632 1.01804 1.02327 1.20511 0.96251 0.92035 1.03145 1.19838 1.00585 0.96891 0.92435 1.20797 0.98865 0.93202 0.98032 1.19872 1.03533 0.94382 0.94459 1.19574 1.02020 0.83366 0.95597 1.83837 1.69551 1.30458 1.24510 1.24478 0.96953 0.99230 0.79919 1.21104 1.12085 0.95193 0.94163 1.17099 0.77520 0.84219 0.84065 1.90789 1.47010 1.25568 1.77646 1.45905 1.67490 1.15629 1.07171 1.22114 0.99348 0.98736 0.76943 0.88561 1.23330 1.00658 0.95027 1.00014 1.21402 0.88550 0.95615 0.89527 1.44438 1.20962 1.47859 1.19634 1.19025 0.91866 1.31055 0.93698 0.90614 1.24825 0.97394 1.01741 0.96440 1.69941 1.25160 1.45730 1.15816 0.86114 0.82621 0.77189 0.79895 1.21564 1.21592 1.20614 1.21615 0.93288 0.95883 0.89146 1.19403 1.03328 0.95351 0.90873 1.20594 0.96176 0.92009 0.98668 0.92328 0.92305 0.92623 0.90655 0.90884 0.84766 0.84916 0.76647 0.77109 0.91496 0.91685 0.95151 0.90855 0.93656 0.95666 0.95419 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.08 -0.63 6.06 -27.89 -0.17 -0.80 16 3 C -0.10 -0.96 5.13 -104.60 -0.54 -1.50 16 4 C -0.09 -0.77 9.67 -39.56 -0.38 -1.15 16 5 C -0.10 -0.96 10.06 -39.46 -0.40 -1.35 16 6 C 0.04 0.47 7.39 -38.56 -0.28 0.19 16 7 O -0.18 -1.99 10.53 5.33 0.06 -1.93 16 8 C 0.06 0.60 11.52 29.95 0.34 0.95 16 9 C -0.22 -2.90 6.31 -103.25 -0.65 -3.55 16 10 C 0.58 9.17 7.80 -12.68 -0.10 9.08 16 11 O -0.53 -10.36 15.93 5.24 0.08 -10.27 16 12 N -0.71 -10.17 5.09 -53.21 -0.27 -10.44 16 13 C 0.13 2.38 3.32 -66.09 -0.22 2.16 16 14 H 0.10 1.86 7.55 -51.93 -0.39 1.47 16 15 C -0.15 -2.64 6.71 -24.58 -0.16 -2.81 16 16 C 0.17 4.11 5.42 -2.53 -0.01 4.10 16 17 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 18 C -0.23 -6.43 10.24 -15.06 -0.15 -6.58 16 19 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 20 C -0.01 -0.21 5.40 -17.43 -0.09 -0.31 16 21 N -0.92 -26.88 10.68 55.49 0.59 -26.28 16 22 Si 0.91 22.09 29.56 -169.99 -5.03 17.07 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.13 2.78 6.99 -3.07 -0.02 2.76 16 27 C -0.09 -1.18 6.29 -104.97 -0.66 -1.84 16 28 C -0.06 -0.71 9.53 -39.40 -0.38 -1.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.22 1.12 7.41 -52.49 -0.39 0.73 16 37 H 0.39 4.25 7.48 -40.82 -0.31 3.94 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.54 8.03 -51.93 -0.42 0.12 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.14 1.89 7.54 -52.49 -0.40 1.50 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -34.19 374.41 -9.45 -43.64 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.44 Total: 1.06 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.51 Total: -2.42 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.26 Total: -52.79 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.14 Total: -12.20 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.19 -9.45 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014470634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.444 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds