Wall clock time and date at job start Tue Mar 31 2020 16:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47725 * 2 1 4 4 C 1.38690 * 119.89682 * 89.99624 * 3 2 1 5 5 C 1.37844 * 120.65321 * 180.02562 * 4 3 2 6 6 C 1.38966 * 119.97064 * 359.97438 * 5 4 3 7 7 O 1.34914 * 133.11424 * 179.97438 * 6 5 4 8 8 C 1.33802 * 111.34960 * 180.02562 * 7 6 5 9 9 C 1.36048 * 109.85576 * 359.97438 * 8 7 6 10 10 C 1.47080 * 127.14390 * 179.97438 * 9 8 7 11 11 O 1.21648 * 120.00116 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00009 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00005 * 179.97438 * 12 10 9 14 14 H 1.08996 * 110.77956 * 31.76219 * 13 12 10 15 15 C 1.55161 * 110.71706 * 155.00170 * 13 12 10 16 16 C 1.54915 * 101.57651 * 153.86684 * 15 13 12 17 17 N 1.47423 * 104.83394 * 322.98859 * 16 15 13 18 18 C 1.36937 * 125.64616 * 204.08146 * 17 16 15 19 19 H 1.08006 * 119.99613 * 169.99493 * 18 17 16 20 20 C 1.38804 * 120.00391 * 350.00343 * 18 17 16 21 21 N 1.31624 * 120.00023 * 350.41582 * 20 18 17 22 22 Si 1.86796 * 120.00327 * 170.41940 * 20 18 17 23 23 H 1.48502 * 109.47437 * 94.13633 * 22 20 18 24 24 H 1.48507 * 109.47291 * 214.14010 * 22 20 18 25 25 H 1.48503 * 109.47103 * 334.13586 * 22 20 18 26 26 C 1.47021 * 108.70154 * 24.13080 * 17 16 15 27 27 C 1.40234 * 119.26176 * 0.26343 * 6 5 4 28 28 C 1.37845 * 119.89879 * 269.98447 * 3 2 1 29 29 H 1.09000 * 109.47415 * 59.99485 * 1 2 3 30 30 H 1.08995 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46845 * 299.99787 * 1 2 3 32 32 H 1.09000 * 109.47015 * 239.99685 * 2 1 3 33 33 H 1.09000 * 109.47415 * 120.00515 * 2 1 3 34 34 H 1.07993 * 119.67640 * 0.02562 * 4 3 2 35 35 H 1.07990 * 120.01548 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.07334 * 180.02562 * 8 7 6 37 37 H 0.96998 * 120.00183 * 0.02562 * 12 10 9 38 38 H 1.08995 * 111.00228 * 271.93477 * 15 13 12 39 39 H 1.08992 * 111.00574 * 35.79241 * 15 13 12 40 40 H 1.09002 * 110.36649 * 81.83041 * 16 15 13 41 41 H 1.09000 * 110.36287 * 204.15199 * 16 15 13 42 42 H 0.96994 * 120.00230 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.88157 * 239.51653 * 26 17 16 44 44 H 1.09004 * 109.88164 * 118.36104 * 26 17 16 45 45 H 1.07990 * 120.18523 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.2023 5 6 2.7219 3.3721 1.2205 6 6 2.9587 4.0415 0.0260 7 8 3.3973 5.2841 -0.2634 8 6 3.4668 5.4807 -1.5851 9 6 3.0707 4.3564 -2.2409 10 6 2.9996 4.1556 -3.6962 11 8 2.6235 3.0896 -4.1455 12 7 3.3511 5.1528 -4.5320 13 6 3.2809 4.9526 -5.9816 14 1 2.4714 4.2695 -6.2388 15 6 3.1086 6.3089 -6.7152 16 6 3.7258 5.9935 -8.1007 17 7 4.8668 5.1057 -7.8123 18 6 5.9666 4.9348 -8.6101 19 1 6.8221 4.3888 -8.2407 20 6 5.9820 5.4635 -9.8935 21 7 4.8802 5.9620 -10.4132 22 14 7.5663 5.4675 -10.8830 23 1 7.6159 4.2579 -11.7431 24 1 7.6148 6.6830 -11.7349 25 1 8.7279 5.4649 -9.9578 26 6 4.6278 4.4332 -6.5270 27 6 2.7202 3.3819 -1.1883 28 6 2.2618 2.0684 -1.1950 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0808 1.5568 2.1335 35 1 2.8975 3.8699 2.1627 36 1 3.7899 6.3950 -2.0604 37 1 3.6513 6.0027 -4.1738 38 1 2.0550 6.5720 -6.8077 39 1 3.6643 7.0993 -6.2108 40 1 2.9986 5.4836 -8.7327 41 1 4.0699 6.9099 -8.5802 42 1 4.8909 6.3311 -11.3101 43 1 5.4286 4.6743 -5.8280 44 1 4.5760 3.3548 -6.6768 45 1 2.0829 1.5605 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014470634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:05 Heat of formation + Delta-G solvation = -9.720415 kcal Electronic energy + Delta-G solvation = -26949.944503 eV Core-core repulsion = 23126.262702 eV Total energy + Delta-G solvation = -3823.681802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.62908 -40.80973 -39.42258 -38.85607 -35.68430 -34.64045 -34.21030 -33.47390 -31.20316 -30.55241 -29.96578 -28.82867 -26.58063 -25.28616 -24.41215 -23.84774 -22.32394 -22.07509 -21.64665 -21.10538 -19.23200 -18.76795 -18.23511 -17.43338 -17.31096 -16.90142 -16.71197 -16.41573 -16.10178 -15.58112 -15.52282 -15.37134 -15.01884 -14.55365 -14.39230 -14.20030 -14.17552 -13.90182 -13.73957 -13.55918 -13.43805 -12.95175 -12.74680 -12.58523 -12.57076 -12.27842 -12.25083 -12.02693 -11.95013 -11.86098 -11.72967 -11.56779 -11.22669 -11.15707 -10.72251 -10.21100 -9.50997 -9.27943 -8.91159 -7.91333 -5.27053 -0.25844 0.24436 0.69166 1.45598 1.46837 1.56796 1.61720 1.99781 2.16786 2.48655 2.68257 3.28111 3.36010 3.43345 3.69355 3.72792 3.77771 3.85279 3.99814 4.12316 4.17770 4.24028 4.29951 4.37126 4.50932 4.51390 4.55394 4.71055 4.74277 4.80770 4.87835 4.97306 5.00950 5.01991 5.08733 5.15438 5.19345 5.30547 5.37189 5.40605 5.47560 5.55623 5.56725 5.62935 5.68892 6.02540 6.17044 6.51092 7.05071 7.16488 7.71003 8.36798 9.20465 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.002339 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.364307 B =11969.732477 C =12439.445900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.089 4.089 5 C -0.095 4.095 6 C 0.023 3.977 7 O -0.180 6.180 8 C 0.106 3.894 9 C -0.266 4.266 10 C 0.586 3.414 11 O -0.582 6.582 12 N -0.695 5.695 13 C 0.151 3.849 14 H 0.078 0.922 15 C -0.126 4.126 16 C 0.176 3.824 17 N -0.622 5.622 18 C -0.249 4.249 19 H 0.075 0.925 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.980 3.020 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.269 1.269 26 C 0.127 3.873 27 C -0.115 4.115 28 C -0.093 4.093 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.265 0.735 37 H 0.417 0.583 38 H 0.095 0.905 39 H 0.093 0.907 40 H -0.002 1.002 41 H 0.047 0.953 42 H 0.251 0.749 43 H 0.035 0.965 44 H 0.001 0.999 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -1.829 28.531 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.023 4.023 7 O -0.079 6.079 8 C 0.037 3.963 9 C -0.271 4.271 10 C 0.376 3.624 11 O -0.463 6.463 12 N -0.347 5.347 13 C 0.045 3.955 14 H 0.097 0.903 15 C -0.164 4.164 16 C 0.050 3.950 17 N -0.348 5.348 18 C -0.378 4.378 19 H 0.092 0.908 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.214 1.214 25 H -0.194 1.194 26 C 0.001 3.999 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.281 0.719 37 H 0.255 0.745 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.016 0.984 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.419 -2.345 28.242 29.294 hybrid contribution 0.859 0.016 -1.615 1.829 sum -6.559 -2.329 26.627 27.522 Atomic orbital electron populations 1.21743 0.94122 1.02555 1.01838 1.20586 0.96626 0.90965 1.03831 1.20137 0.99147 0.97672 0.92155 1.21227 0.97651 0.93094 0.98637 1.20361 1.01670 0.94452 0.94858 1.19874 1.03111 0.83587 0.95743 1.83867 1.69102 1.30085 1.24811 1.25280 0.92652 0.99124 0.79252 1.20896 1.16342 0.97328 0.92537 1.17479 0.76243 0.83427 0.85298 1.90767 1.49292 1.27617 1.78665 1.45573 1.67307 1.16497 1.05294 1.21638 0.96339 0.98475 0.79068 0.90346 1.23138 1.02264 0.95175 0.95868 1.21253 0.87473 0.93637 0.92609 1.44733 1.20884 1.48743 1.20486 1.19368 0.92823 1.31093 0.94523 0.90751 1.25669 1.00593 1.01647 0.97458 1.70134 1.27001 1.46406 1.15888 0.85062 0.79070 0.76878 0.78250 1.21555 1.21372 1.19364 1.21697 0.95880 0.94259 0.88107 1.19694 1.04080 0.95840 0.92062 1.20552 0.99151 0.92689 0.98770 0.94362 0.90958 0.91524 0.91822 0.88319 0.81023 0.81742 0.71922 0.74543 0.88638 0.88863 0.98441 0.93460 0.94008 0.94724 0.98119 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.89 71.98 0.71 -1.25 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.75 5.13 -19.85 -0.10 -1.85 16 4 C -0.09 -1.24 9.67 22.28 0.22 -1.03 16 5 C -0.10 -1.47 10.06 22.35 0.22 -1.24 16 6 C 0.02 0.49 7.39 22.93 0.17 0.66 16 7 O -0.18 -3.35 10.53 -3.84 -0.04 -3.39 16 8 C 0.11 1.73 11.52 67.31 0.78 2.50 16 9 C -0.27 -6.85 6.31 -18.98 -0.12 -6.97 16 10 C 0.59 18.67 7.80 86.56 0.68 19.35 16 11 O -0.58 -24.15 15.93 -4.18 -0.07 -24.22 16 12 N -0.69 -19.00 5.09 -440.50 -2.24 -21.24 16 13 C 0.15 5.38 3.32 46.18 0.15 5.54 16 14 H 0.08 3.13 7.55 -2.39 -0.02 3.11 16 15 C -0.13 -4.21 6.71 31.99 0.21 -4.00 16 16 C 0.18 8.48 5.42 86.86 0.47 8.95 16 17 N -0.62 -32.83 3.39 -691.99 -2.35 -35.18 16 18 C -0.25 -14.36 10.24 84.03 0.86 -13.50 16 19 H 0.07 4.18 7.85 -2.91 -0.02 4.15 16 20 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 21 N -0.95 -56.83 10.68 21.65 0.23 -56.60 16 22 Si 0.98 45.98 29.56 68.60 2.03 48.01 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.13 5.68 6.99 86.73 0.61 6.29 16 27 C -0.12 -3.11 6.29 -20.09 -0.13 -3.24 16 28 C -0.09 -2.51 9.53 22.39 0.21 -2.30 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.10 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.44 8.06 -2.92 -0.02 1.42 16 36 H 0.27 1.35 7.41 -2.91 -0.02 1.33 16 37 H 0.42 7.60 7.48 -92.71 -0.69 6.90 16 38 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 40 H 0.00 -0.13 8.07 -2.39 -0.02 -0.15 16 41 H 0.05 2.51 6.94 -2.39 -0.02 2.49 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 44 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.11 3.43 7.54 -2.92 -0.02 3.41 16 Total: -1.00 -80.43 374.41 3.46 -76.97 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.31 Total: 11.77 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.58 Total: 3.88 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -4.36 Total: -113.02 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.11 Total: -27.60 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.43 3.46 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014470634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.250 kcal (2) G-P(sol) polarization free energy of solvation -80.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds