Wall clock time and date at job start Tue Mar 31 2020 16:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.46981 * 2 1 4 4 O 1.33806 * 125.07521 * 270.26026 * 3 2 1 5 5 C 1.34915 * 111.34907 * 180.16463 * 4 3 2 6 6 C 1.38965 * 133.11380 * 179.91565 * 5 4 3 7 7 C 1.37837 * 119.97070 * 179.72418 * 6 5 4 8 8 C 1.38681 * 120.65591 * 359.95374 * 7 6 5 9 9 C 1.37838 * 120.20471 * 0.02562 * 8 7 6 10 10 C 1.39110 * 119.62646 * 0.02562 * 9 8 7 11 11 C 1.36054 * 125.07431 * 90.00731 * 3 2 1 12 12 C 1.47079 * 127.13726 * 359.95559 * 11 3 2 13 13 O 1.21646 * 120.00371 * 270.02083 * 12 11 3 14 14 N 1.34779 * 119.99906 * 90.02778 * 12 11 3 15 15 C 1.46500 * 120.00317 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.88151 * 31.11661 * 15 14 12 17 17 C 1.55151 * 111.00465 * 154.99435 * 15 14 12 18 18 C 1.54327 * 102.94075 * 153.57702 * 17 15 14 19 19 N 1.47024 * 107.26968 * 337.80881 * 18 17 15 20 20 C 1.36942 * 125.64779 * 178.96102 * 19 18 17 21 21 H 1.07998 * 119.99952 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99612 * 359.97438 * 20 19 18 23 23 N 1.31611 * 120.00723 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99575 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46844 * 90.00133 * 24 22 20 26 26 H 1.48494 * 109.47082 * 209.99876 * 24 22 20 27 27 H 1.48492 * 109.47182 * 330.00401 * 24 22 20 28 28 C 1.47423 * 108.70469 * 358.94154 * 19 18 17 29 29 H 1.09008 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47391 * 299.99870 * 1 2 3 31 31 H 1.09006 * 109.47771 * 59.99690 * 1 2 3 32 32 H 1.09007 * 109.46787 * 240.00540 * 2 1 3 33 33 H 1.08993 * 109.47472 * 120.00459 * 2 1 3 34 34 H 1.08001 * 120.01343 * 359.65374 * 6 5 4 35 35 H 1.08001 * 119.67068 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.90009 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.19215 * 180.02562 * 9 8 7 38 38 H 0.96999 * 119.99823 * 359.97438 * 14 12 11 39 39 H 1.09001 * 110.72455 * 271.93834 * 17 15 14 40 40 H 1.09003 * 110.72195 * 35.03966 * 17 15 14 41 41 H 1.09003 * 109.88256 * 97.22740 * 18 17 15 42 42 H 1.08996 * 109.88308 * 218.39072 * 18 17 15 43 43 H 0.96998 * 120.00843 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36459 * 265.29096 * 28 19 18 45 45 H 1.08995 * 110.36523 * 142.96682 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2838 2.1474 -1.0951 5 6 2.7254 3.3814 -0.7750 6 6 3.1127 4.4784 -1.5351 7 6 3.5231 5.6375 -0.9121 8 6 3.5536 5.7238 0.4717 9 6 3.1728 4.6463 1.2423 10 6 2.7579 3.4712 0.6241 11 6 2.2929 2.1579 1.1135 12 6 2.1425 1.7345 2.5140 13 8 1.0871 1.9108 3.0927 14 7 3.1740 1.1513 3.1562 15 6 3.0244 0.7300 4.5513 16 1 1.9956 0.4367 4.7604 17 6 4.0105 -0.4175 4.8945 18 6 4.2135 -0.2553 6.4157 19 7 3.8718 1.1335 6.7561 20 6 3.9008 1.6777 8.0124 21 1 3.6308 2.7131 8.1588 22 6 4.2771 0.8983 9.0977 23 7 4.6065 -0.3633 8.9193 24 14 4.3173 1.6408 10.8114 25 1 2.9930 1.4627 11.4592 26 1 5.3599 0.9608 11.6211 27 1 4.6309 3.0891 10.7161 28 6 3.4931 1.8435 5.5208 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0933 4.4224 -2.6135 35 1 3.8234 6.4870 -1.5076 36 1 3.8769 6.6382 0.9470 37 1 3.1963 4.7139 2.3199 38 1 4.0154 1.0105 2.6946 39 1 3.5686 -1.3873 4.6657 40 1 4.9525 -0.2890 4.3612 41 1 3.5575 -0.9407 6.9524 42 1 5.2533 -0.4553 6.6744 43 1 4.8699 -0.9078 9.6776 44 1 4.3534 2.3695 5.1068 45 1 2.6797 2.5415 5.7186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016345561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:30 Heat of formation + Delta-G solvation = 15.040396 kcal Electronic energy + Delta-G solvation = -27596.418603 eV Core-core repulsion = 23773.810510 eV Total energy + Delta-G solvation = -3822.608093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80668 -39.45930 -38.16456 -37.20972 -34.53894 -33.99577 -32.62063 -31.76707 -30.63006 -29.28083 -28.89739 -27.15637 -24.93490 -24.42618 -23.17974 -23.03182 -21.45727 -20.39803 -20.25907 -19.77342 -18.06799 -17.26289 -16.91493 -16.60255 -16.14796 -15.84409 -15.50502 -14.78857 -14.61076 -14.42189 -14.31654 -14.07408 -14.05757 -13.66195 -13.28803 -12.86308 -12.84968 -12.44124 -12.39228 -12.25185 -12.17481 -11.84452 -11.80650 -11.43919 -11.15421 -11.00232 -10.91515 -10.76714 -10.50241 -10.22389 -10.09814 -9.92546 -9.83250 -9.69386 -8.87513 -8.78469 -8.59835 -8.36149 -6.84447 -5.71552 -3.05133 0.61339 1.09059 1.86575 2.30743 2.58454 3.33139 3.41727 3.46580 3.47791 3.48983 4.02585 4.41768 4.52230 4.64176 4.76305 4.79169 4.83027 4.88565 5.02345 5.13224 5.20596 5.25251 5.30040 5.43868 5.54027 5.58063 5.60727 5.64479 5.72509 5.78651 5.89260 5.97116 5.98582 6.11318 6.16454 6.21300 6.30667 6.38878 6.40020 6.56150 6.67585 6.87676 6.94808 7.52973 7.56808 7.66025 7.81194 8.23876 8.33499 9.21649 9.81482 10.46261 11.40387 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002921 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.168600 B = 9582.754432 C =10762.940675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 C 0.085 3.915 4 O -0.184 6.184 5 C 0.050 3.950 6 C -0.106 4.106 7 C -0.095 4.095 8 C -0.130 4.130 9 C -0.068 4.068 10 C -0.097 4.097 11 C -0.218 4.218 12 C 0.589 3.411 13 O -0.527 6.527 14 N -0.706 5.706 15 C 0.125 3.875 16 H 0.098 0.902 17 C -0.149 4.149 18 C 0.180 3.820 19 N -0.603 5.603 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.129 3.871 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.399 0.601 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 4.319 -24.133 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.090 4.090 3 C 0.035 3.965 4 O -0.085 6.085 5 C 0.003 3.997 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.148 4.148 9 C -0.086 4.086 10 C -0.098 4.098 11 C -0.222 4.222 12 C 0.374 3.626 13 O -0.403 6.403 14 N -0.356 5.356 15 C 0.021 3.979 16 H 0.116 0.884 17 C -0.188 4.188 18 C 0.054 3.946 19 N -0.330 5.330 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.002 3.998 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.008 4.281 -23.735 24.305 hybrid contribution 0.549 0.399 0.812 1.059 sum -2.458 4.681 -22.922 23.524 Atomic orbital electron populations 1.21806 0.92848 1.02996 1.03316 1.20363 0.97406 0.86308 1.04926 1.22603 0.97220 0.94113 0.82520 1.83775 1.68941 1.22073 1.33673 1.19515 1.01647 0.85319 0.93218 1.19921 1.02960 0.89873 0.99646 1.20927 0.98958 0.96681 0.94777 1.21083 1.01275 0.98755 0.93681 1.20614 0.96627 0.90792 1.00592 1.19477 1.03580 0.94136 0.92614 1.20690 1.12696 0.94737 0.94126 1.17121 0.83986 0.77385 0.84122 1.90838 1.27535 1.54487 1.67422 1.46043 1.15003 1.60771 1.13781 1.22381 1.00930 0.96057 0.78569 0.88355 1.23188 0.97726 0.96965 1.00916 1.21147 1.00277 0.86626 0.86504 1.44387 1.79169 1.07566 1.01916 1.19075 1.39046 0.95180 0.82228 0.90377 1.24797 1.01596 0.96021 0.98008 1.69937 1.51710 1.06033 1.29434 0.86097 0.77332 0.78098 0.84121 1.21545 1.21670 1.20681 1.21815 0.96781 0.93680 0.87536 0.91023 0.91251 0.92121 0.89078 0.88166 0.84964 0.84632 0.84972 0.85143 0.76683 0.91558 0.92012 0.93188 0.93549 0.93727 0.96259 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.15 0.37 -0.99 16 2 C -0.05 -0.48 6.25 -27.89 -0.17 -0.65 16 3 C 0.09 1.01 6.55 -35.09 -0.23 0.78 16 4 O -0.18 -2.21 10.53 5.31 0.06 -2.16 16 5 C 0.05 0.60 7.39 -38.56 -0.28 0.31 16 6 C -0.11 -0.99 10.06 -39.46 -0.40 -1.39 16 7 C -0.10 -0.79 10.01 -39.56 -0.40 -1.18 16 8 C -0.13 -1.23 10.04 -39.56 -0.40 -1.63 16 9 C -0.07 -0.83 10.09 -39.40 -0.40 -1.23 16 10 C -0.10 -1.30 6.39 -104.98 -0.67 -1.97 16 11 C -0.22 -3.03 6.06 -103.25 -0.63 -3.66 16 12 C 0.59 9.44 7.20 -12.67 -0.09 9.35 16 13 O -0.53 -10.48 16.75 5.24 0.09 -10.39 16 14 N -0.71 -10.48 5.19 -52.91 -0.27 -10.75 16 15 C 0.13 2.27 3.42 -65.79 -0.23 2.05 16 16 H 0.10 1.96 7.54 -51.93 -0.39 1.57 16 17 C -0.15 -2.64 6.60 -24.90 -0.16 -2.80 16 18 C 0.18 4.29 5.37 -3.06 -0.02 4.27 16 19 N -0.60 -15.62 3.39 -170.08 -0.58 -16.20 16 20 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.13 2.80 6.93 -2.53 -0.02 2.78 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.10 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.40 4.93 8.55 -40.82 -0.35 4.58 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 41 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 42 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -33.69 377.27 -9.98 -43.67 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.53 Total: 2.24 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.97 Total: -2.87 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.28 Total: -53.45 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.14 Total: -12.55 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.69 -9.98 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016345561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.709 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds