Wall clock time and date at job start Tue Mar 31 2020 16:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.46981 * 2 1 4 4 O 1.33806 * 125.07521 * 270.26026 * 3 2 1 5 5 C 1.34915 * 111.34907 * 180.16463 * 4 3 2 6 6 C 1.38965 * 133.11380 * 179.91565 * 5 4 3 7 7 C 1.37837 * 119.97070 * 179.72418 * 6 5 4 8 8 C 1.38681 * 120.65591 * 359.95374 * 7 6 5 9 9 C 1.37838 * 120.20471 * 0.02562 * 8 7 6 10 10 C 1.39110 * 119.62646 * 0.02562 * 9 8 7 11 11 C 1.36054 * 125.07431 * 90.00731 * 3 2 1 12 12 C 1.47079 * 127.13726 * 359.95559 * 11 3 2 13 13 O 1.21646 * 120.00371 * 270.02083 * 12 11 3 14 14 N 1.34779 * 119.99906 * 90.02778 * 12 11 3 15 15 C 1.46500 * 120.00317 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.88151 * 31.11661 * 15 14 12 17 17 C 1.55151 * 111.00465 * 154.99435 * 15 14 12 18 18 C 1.54327 * 102.94075 * 153.57702 * 17 15 14 19 19 N 1.47024 * 107.26968 * 337.80881 * 18 17 15 20 20 C 1.36942 * 125.64779 * 178.96102 * 19 18 17 21 21 H 1.07998 * 119.99952 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99612 * 359.97438 * 20 19 18 23 23 N 1.31611 * 120.00723 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99575 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46844 * 90.00133 * 24 22 20 26 26 H 1.48494 * 109.47082 * 209.99876 * 24 22 20 27 27 H 1.48492 * 109.47182 * 330.00401 * 24 22 20 28 28 C 1.47423 * 108.70469 * 358.94154 * 19 18 17 29 29 H 1.09008 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47391 * 299.99870 * 1 2 3 31 31 H 1.09006 * 109.47771 * 59.99690 * 1 2 3 32 32 H 1.09007 * 109.46787 * 240.00540 * 2 1 3 33 33 H 1.08993 * 109.47472 * 120.00459 * 2 1 3 34 34 H 1.08001 * 120.01343 * 359.65374 * 6 5 4 35 35 H 1.08001 * 119.67068 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.90009 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.19215 * 180.02562 * 9 8 7 38 38 H 0.96999 * 119.99823 * 359.97438 * 14 12 11 39 39 H 1.09001 * 110.72455 * 271.93834 * 17 15 14 40 40 H 1.09003 * 110.72195 * 35.03966 * 17 15 14 41 41 H 1.09003 * 109.88256 * 97.22740 * 18 17 15 42 42 H 1.08996 * 109.88308 * 218.39072 * 18 17 15 43 43 H 0.96998 * 120.00843 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.36459 * 265.29096 * 28 19 18 45 45 H 1.08995 * 110.36523 * 142.96682 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2838 2.1474 -1.0951 5 6 2.7254 3.3814 -0.7750 6 6 3.1127 4.4784 -1.5351 7 6 3.5231 5.6375 -0.9121 8 6 3.5536 5.7238 0.4717 9 6 3.1728 4.6463 1.2423 10 6 2.7579 3.4712 0.6241 11 6 2.2929 2.1579 1.1135 12 6 2.1425 1.7345 2.5140 13 8 1.0871 1.9108 3.0927 14 7 3.1740 1.1513 3.1562 15 6 3.0244 0.7300 4.5513 16 1 1.9956 0.4367 4.7604 17 6 4.0105 -0.4175 4.8945 18 6 4.2135 -0.2553 6.4157 19 7 3.8718 1.1335 6.7561 20 6 3.9008 1.6777 8.0124 21 1 3.6308 2.7131 8.1588 22 6 4.2771 0.8983 9.0977 23 7 4.6065 -0.3633 8.9193 24 14 4.3173 1.6408 10.8114 25 1 2.9930 1.4627 11.4592 26 1 5.3599 0.9608 11.6211 27 1 4.6309 3.0891 10.7161 28 6 3.4931 1.8435 5.5208 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0933 4.4224 -2.6135 35 1 3.8234 6.4870 -1.5076 36 1 3.8769 6.6382 0.9470 37 1 3.1963 4.7139 2.3199 38 1 4.0154 1.0105 2.6946 39 1 3.5686 -1.3873 4.6657 40 1 4.9525 -0.2890 4.3612 41 1 3.5575 -0.9407 6.9524 42 1 5.2533 -0.4553 6.6744 43 1 4.8699 -0.9078 9.6776 44 1 4.3534 2.3695 5.1068 45 1 2.6797 2.5415 5.7186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016345561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:29 Heat of formation + Delta-G solvation = -5.604002 kcal Electronic energy + Delta-G solvation = -27597.313811 eV Core-core repulsion = 23773.810510 eV Total energy + Delta-G solvation = -3823.503301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.69051 -40.85576 -38.94233 -38.91119 -35.68014 -35.35812 -33.87542 -33.25453 -31.44864 -31.04035 -29.87988 -28.82999 -26.63743 -25.50379 -24.32327 -23.87896 -22.31861 -22.10133 -21.81461 -21.06262 -19.25382 -18.78663 -18.07032 -17.74933 -17.26592 -16.97119 -16.67006 -16.42842 -16.07696 -15.70219 -15.38601 -15.14466 -15.10199 -14.81957 -14.47234 -14.20403 -14.11813 -13.94961 -13.73320 -13.59693 -13.17332 -12.98805 -12.92878 -12.78809 -12.56157 -12.47605 -12.20261 -12.16156 -12.05101 -11.89961 -11.84476 -11.62675 -11.32651 -11.06430 -10.73986 -10.22876 -9.68352 -9.22431 -8.94858 -7.88402 -5.24862 -0.21163 0.28339 0.95543 1.31338 1.44570 1.45545 1.46960 1.55524 2.07496 2.48617 2.67472 3.20773 3.30131 3.45644 3.63303 3.75391 3.88094 3.95070 4.01009 4.03007 4.10102 4.16220 4.17754 4.26325 4.35730 4.47960 4.54281 4.55500 4.68073 4.81720 4.81975 4.89262 4.93411 4.94213 5.01542 5.06855 5.18747 5.25549 5.33370 5.39267 5.43476 5.45786 5.61585 5.61794 5.71468 6.04147 6.16117 6.41420 7.05972 7.08287 7.71782 8.35245 9.21645 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002921 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.168600 B = 9582.754432 C =10762.940675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C 0.101 3.899 4 O -0.183 6.183 5 C 0.030 3.970 6 C -0.101 4.101 7 C -0.087 4.087 8 C -0.122 4.122 9 C -0.100 4.100 10 C -0.121 4.121 11 C -0.252 4.252 12 C 0.598 3.402 13 O -0.572 6.572 14 N -0.690 5.690 15 C 0.145 3.855 16 H 0.081 0.919 17 C -0.127 4.127 18 C 0.184 3.816 19 N -0.625 5.625 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.061 4.061 23 N -0.947 5.947 24 Si 0.980 3.020 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.271 1.271 28 C 0.128 3.872 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.114 0.886 38 H 0.415 0.585 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.016 0.984 42 H 0.018 0.982 43 H 0.249 0.751 44 H 0.029 0.971 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 5.045 -26.995 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C 0.051 3.949 4 O -0.083 6.083 5 C -0.016 4.016 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.140 4.140 9 C -0.118 4.118 10 C -0.122 4.122 11 C -0.256 4.256 12 C 0.385 3.615 13 O -0.451 6.451 14 N -0.340 5.340 15 C 0.039 3.961 16 H 0.099 0.901 17 C -0.165 4.165 18 C 0.059 3.941 19 N -0.352 5.352 20 C -0.378 4.378 21 H 0.094 0.906 22 C -0.254 4.254 23 N -0.596 5.596 24 Si 0.807 3.193 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.195 1.195 28 C 0.002 3.998 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.173 0.827 37 H 0.132 0.868 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.246 5.021 -26.647 27.209 hybrid contribution 0.319 0.274 1.632 1.686 sum -1.927 5.295 -25.015 25.642 Atomic orbital electron populations 1.21782 0.92813 1.04038 1.02017 1.20563 0.97285 0.84791 1.06499 1.23052 0.95134 0.94809 0.81895 1.83779 1.68864 1.22250 1.33443 1.19916 1.02708 0.85969 0.92977 1.20417 1.01383 0.89016 1.01107 1.21414 0.97264 0.97433 0.94387 1.21442 0.99571 0.98521 0.94497 1.20695 0.98975 0.91896 1.00275 1.19676 1.04630 0.94246 0.93682 1.20517 1.15845 0.96122 0.93141 1.17383 0.83121 0.76127 0.84879 1.90810 1.29355 1.56209 1.68750 1.45785 1.15697 1.60267 1.12284 1.21901 0.99943 0.94721 0.79560 0.90130 1.23006 0.99116 0.98011 0.96382 1.20952 0.97611 0.85113 0.90397 1.44665 1.79334 1.08735 1.02453 1.19416 1.39127 0.95479 0.83811 0.90553 1.25637 1.01523 0.96554 1.01691 1.70143 1.52256 1.07053 1.30122 0.85068 0.77113 0.77781 0.79289 1.21296 1.21524 1.19544 1.21905 0.96384 0.94378 0.87163 0.88831 0.94330 0.91581 0.86010 0.88019 0.82029 0.80664 0.82699 0.86772 0.74765 0.88784 0.89165 0.96562 0.96363 0.94130 0.95295 0.95761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.05 -0.88 6.25 29.85 0.19 -0.70 16 3 C 0.10 2.31 6.55 25.18 0.16 2.48 16 4 O -0.18 -4.11 10.53 -3.90 -0.04 -4.15 16 5 C 0.03 0.69 7.39 22.93 0.17 0.86 16 6 C -0.10 -1.58 10.06 22.35 0.22 -1.36 16 7 C -0.09 -1.14 10.01 22.28 0.22 -0.91 16 8 C -0.12 -2.09 10.04 22.28 0.22 -1.87 16 9 C -0.10 -2.46 10.09 22.38 0.23 -2.23 16 10 C -0.12 -3.24 6.39 -20.09 -0.13 -3.37 16 11 C -0.25 -7.06 6.06 -18.98 -0.12 -7.17 16 12 C 0.60 19.62 7.20 86.56 0.62 20.25 16 13 O -0.57 -23.82 16.75 -4.18 -0.07 -23.89 16 14 N -0.69 -20.27 5.19 -439.55 -2.28 -22.56 16 15 C 0.14 5.28 3.42 46.38 0.16 5.43 16 16 H 0.08 3.29 7.54 -2.39 -0.02 3.27 16 17 C -0.13 -4.36 6.60 31.78 0.21 -4.15 16 18 C 0.18 9.04 5.37 86.73 0.47 9.51 16 19 N -0.62 -33.39 3.39 -692.00 -2.35 -35.74 16 20 C -0.25 -14.57 10.28 84.03 0.86 -13.70 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 23 N -0.95 -57.14 10.31 21.65 0.22 -56.91 16 24 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 C 0.13 5.71 6.93 86.85 0.60 6.32 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.10 1.63 7.86 -2.39 -0.02 1.62 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.42 9.69 8.55 -92.71 -0.79 8.90 16 39 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.09 2.64 8.00 -2.39 -0.02 2.62 16 41 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 42 H 0.02 0.98 7.51 -2.39 -0.02 0.96 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -77.42 377.27 3.00 -74.43 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.21 Total: 15.62 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.28 Total: 4.54 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.41 Total: -115.21 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.11 Total: -28.05 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.42 3.00 -74.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016345561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.822 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds