Wall clock time and date at job start Tue Mar 31 2020 16:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47592 * 2 1 4 4 O 1.33805 * 125.07431 * 270.02968 * 3 2 1 5 5 C 1.34910 * 111.34903 * 179.97438 * 4 3 2 6 6 C 1.38968 * 133.11389 * 179.97438 * 5 4 3 7 7 C 1.37841 * 119.97245 * 179.97438 * 6 5 4 8 8 C 1.38689 * 120.65374 * 359.97438 * 7 6 5 9 9 C 1.37841 * 120.20124 * 359.97438 * 8 7 6 10 10 C 1.39106 * 119.62879 * 359.74269 * 9 8 7 11 11 C 1.36051 * 125.07066 * 89.99789 * 3 2 1 12 12 C 1.47076 * 127.14473 * 0.02772 * 11 3 2 13 13 O 1.21645 * 120.00245 * 89.99841 * 12 11 3 14 14 N 1.34777 * 119.99757 * 269.99748 * 12 11 3 15 15 C 1.47422 * 125.65000 * 359.96021 * 14 12 11 16 16 C 1.54917 * 104.83237 * 204.16293 * 15 14 12 17 17 C 1.55155 * 101.58189 * 322.99082 * 16 15 14 18 18 H 1.09006 * 110.86995 * 277.07139 * 17 16 15 19 19 N 1.46490 * 110.72364 * 153.86509 * 17 16 15 20 20 C 1.36935 * 120.00121 * 91.47139 * 19 17 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47023 * 125.64727 * 179.97438 * 14 12 11 29 29 H 1.09005 * 109.46573 * 300.00013 * 1 2 3 30 30 H 1.09001 * 109.47015 * 59.99271 * 1 2 3 31 31 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47030 * 239.99436 * 2 1 3 33 33 H 1.09007 * 109.47138 * 120.00296 * 2 1 3 34 34 H 1.07996 * 120.01033 * 0.02562 * 6 5 4 35 35 H 1.07993 * 119.67264 * 179.97438 * 7 6 5 36 36 H 1.07995 * 119.89778 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.18499 * 180.02562 * 9 8 7 38 38 H 1.09003 * 110.36401 * 322.99515 * 15 14 12 39 39 H 1.08999 * 110.37131 * 85.21682 * 15 14 12 40 40 H 1.08996 * 111.00481 * 204.91038 * 16 15 14 41 41 H 1.09004 * 111.00233 * 81.06185 * 16 15 14 42 42 H 0.97000 * 120.00577 * 271.47738 * 19 17 16 43 43 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 44 44 H 1.08999 * 109.88084 * 59.48936 * 28 14 12 45 45 H 1.09002 * 110.01437 * 298.39810 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2882 2.1458 -1.0951 5 6 2.7248 3.3816 -0.7750 6 6 3.1125 4.4784 -1.5351 7 6 3.5216 5.6380 -0.9122 8 6 3.5509 5.7248 0.4717 9 6 3.1690 4.6476 1.2422 10 6 2.7488 3.4744 0.6241 11 6 2.2930 2.1578 1.1135 12 6 2.1437 1.7341 2.5140 13 8 3.0753 1.2080 3.0929 14 7 0.9747 1.9287 3.1559 15 6 -0.2297 2.5519 2.5777 16 6 -1.0168 3.0983 3.7950 17 6 -0.7579 1.9946 4.8542 18 1 -1.4490 1.1617 4.7241 19 7 -0.8587 2.5425 6.2090 20 6 -2.0572 2.5159 6.8709 21 1 -2.9280 2.0907 6.3942 22 6 -2.1530 3.0356 8.1546 23 7 -1.0918 3.5543 8.7353 24 14 -3.7877 2.9987 9.0577 25 1 -3.6251 3.6107 10.4009 26 1 -4.7978 3.7649 8.2842 27 1 -4.2400 1.5921 9.2055 28 6 0.6896 1.5550 4.5489 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0925 4.4225 -2.6134 35 1 3.8223 6.4873 -1.5076 36 1 3.8731 6.6394 0.9470 37 1 3.1915 4.7156 2.3198 38 1 0.0486 3.3667 1.9092 39 1 -0.8219 1.8091 2.0433 40 1 -2.0797 3.1805 3.5680 41 1 -0.6136 4.0566 4.1227 42 1 -0.0766 2.9241 6.6374 43 1 -0.2428 3.5731 8.2665 44 1 1.3811 2.0661 5.2188 45 1 0.7834 0.4761 4.6724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019827137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:00 Heat of formation + Delta-G solvation = 8.797033 kcal Electronic energy + Delta-G solvation = -27974.561428 eV Core-core repulsion = 24151.682603 eV Total energy + Delta-G solvation = -3822.878825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83514 -39.72648 -38.18400 -37.36103 -34.68859 -34.34716 -32.64756 -31.50277 -30.64369 -29.55830 -29.02448 -27.70050 -24.82443 -24.08618 -23.20592 -23.06287 -22.15994 -21.32610 -20.26743 -19.24039 -17.81970 -17.60617 -17.24579 -16.73795 -16.14829 -15.86577 -15.73609 -15.09211 -14.70727 -14.56856 -14.40811 -14.17348 -13.87375 -13.71423 -13.43132 -13.32161 -12.94827 -12.68720 -12.53355 -12.39729 -12.27737 -11.98320 -11.84454 -11.80529 -11.47000 -11.19767 -11.03684 -10.77486 -10.70269 -10.39464 -10.28980 -10.02734 -9.94332 -9.26709 -9.01206 -8.89239 -8.52719 -8.37670 -7.15772 -6.17961 -3.20218 0.59572 1.07156 1.84302 2.29103 2.50099 3.09109 3.45300 3.48054 3.51132 3.68926 4.00427 4.29946 4.59019 4.60444 4.66605 4.72525 4.79701 4.84200 4.94819 4.97282 5.05233 5.13346 5.21909 5.23161 5.27366 5.40564 5.50466 5.54594 5.57966 5.62896 5.66391 5.82751 5.85562 5.93376 5.95314 5.98504 6.08480 6.12908 6.18892 6.26200 6.36943 6.44767 6.48591 6.76651 6.85993 7.56897 7.72050 8.17005 8.66958 9.11041 9.97657 10.10993 11.29780 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003024 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.093468 B = 9256.958358 C =10057.201005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.054 4.054 3 C 0.085 3.915 4 O -0.183 6.183 5 C 0.051 3.949 6 C -0.105 4.105 7 C -0.095 4.095 8 C -0.129 4.129 9 C -0.069 4.069 10 C -0.097 4.097 11 C -0.211 4.211 12 C 0.603 3.397 13 O -0.534 6.534 14 N -0.601 5.601 15 C 0.099 3.901 16 C -0.153 4.153 17 C 0.178 3.822 18 H 0.069 0.931 19 N -0.726 5.726 20 C -0.338 4.338 21 H 0.067 0.933 22 C -0.041 4.041 23 N -0.940 5.940 24 Si 1.081 2.919 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.098 3.902 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.369 0.631 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 -0.721 -23.712 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 C 0.036 3.964 4 O -0.084 6.084 5 C 0.004 3.996 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.147 4.147 9 C -0.087 4.087 10 C -0.098 4.098 11 C -0.215 4.215 12 C 0.390 3.610 13 O -0.412 6.412 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.195 4.195 17 C 0.066 3.934 18 H 0.087 0.913 19 N -0.367 5.367 20 C -0.468 4.468 21 H 0.085 0.915 22 C -0.239 4.239 23 N -0.584 5.584 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.025 4.025 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.310 -0.794 -22.314 22.951 hybrid contribution 1.058 -0.125 -1.313 1.690 sum 6.368 -0.919 -23.626 24.487 Atomic orbital electron populations 1.21898 0.92857 1.03229 1.03198 1.20368 0.97226 0.86424 1.05107 1.22557 0.97158 0.94257 0.82471 1.83775 1.69089 1.21922 1.33600 1.19505 1.01709 0.85239 0.93151 1.19927 1.02882 0.89839 0.99668 1.20930 0.98930 0.96692 0.94745 1.21077 1.01259 0.98682 0.93703 1.20583 0.96724 0.90932 1.00455 1.19468 1.03859 0.93849 0.92661 1.20540 1.12428 0.94785 0.93792 1.16743 0.81394 0.78641 0.84221 1.90825 1.38958 1.43835 1.67541 1.48404 1.11835 1.59300 1.13838 1.22458 0.85820 0.96872 0.97258 1.23552 0.99795 1.01146 0.94957 1.21118 0.91936 0.94183 0.86117 0.91287 1.42367 1.10435 1.71818 1.12127 1.20018 0.88309 1.38669 0.99843 0.91502 1.25821 1.05167 0.98388 0.94540 1.70888 1.00553 1.47283 1.39676 0.83236 0.73546 0.75846 0.76259 1.20995 1.22179 1.22157 1.22398 0.98808 1.00256 0.81007 0.91498 0.91867 0.90864 0.89011 0.88180 0.84905 0.84577 0.84967 0.85384 0.91349 0.91422 0.90365 0.90801 0.79685 0.93281 0.91241 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.51 6.25 -27.89 -0.17 -0.69 16 3 C 0.09 1.06 6.55 -35.09 -0.23 0.83 16 4 O -0.18 -2.27 10.53 5.33 0.06 -2.21 16 5 C 0.05 0.63 7.39 -38.56 -0.28 0.34 16 6 C -0.10 -1.00 10.06 -39.46 -0.40 -1.40 16 7 C -0.09 -0.80 10.01 -39.56 -0.40 -1.20 16 8 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 9 C -0.07 -0.86 10.09 -39.40 -0.40 -1.26 16 10 C -0.10 -1.34 6.39 -104.97 -0.67 -2.01 16 11 C -0.21 -3.08 4.95 -103.25 -0.51 -3.60 16 12 C 0.60 10.17 7.23 -12.68 -0.09 10.08 16 13 O -0.53 -10.86 17.44 5.24 0.09 -10.76 16 14 N -0.60 -9.55 3.33 -171.91 -0.57 -10.12 16 15 C 0.10 1.36 6.57 -2.53 -0.02 1.35 16 16 C -0.15 -2.51 6.77 -24.58 -0.17 -2.68 16 17 C 0.18 3.38 3.61 -66.10 -0.24 3.14 16 18 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 19 N -0.73 -17.49 5.22 -51.65 -0.27 -17.76 16 20 C -0.34 -9.13 9.96 -15.06 -0.15 -9.28 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 23 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 24 Si 1.08 25.24 29.92 -169.99 -5.09 20.15 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.10 1.74 6.62 -3.06 -0.02 1.72 16 29 H 0.07 0.63 5.78 -51.93 -0.30 0.33 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 39 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.37 9.33 6.40 -40.82 -0.26 9.07 16 43 H 0.26 7.69 6.77 -40.82 -0.28 7.41 16 44 H 0.07 1.35 7.72 -51.93 -0.40 0.94 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -33.55 374.49 -9.46 -43.00 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.21 Total: 8.34 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.87 Total: -8.47 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.08 Total: -55.70 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.15 Total: -12.97 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.55 -9.46 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019827137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.798 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds