Wall clock time and date at job start Tue Mar 31 2020 16:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47592 * 2 1 4 4 O 1.33805 * 125.07431 * 270.02968 * 3 2 1 5 5 C 1.34910 * 111.34903 * 179.97438 * 4 3 2 6 6 C 1.38968 * 133.11389 * 179.97438 * 5 4 3 7 7 C 1.37841 * 119.97245 * 179.97438 * 6 5 4 8 8 C 1.38689 * 120.65374 * 359.97438 * 7 6 5 9 9 C 1.37841 * 120.20124 * 359.97438 * 8 7 6 10 10 C 1.39106 * 119.62879 * 359.74269 * 9 8 7 11 11 C 1.36051 * 125.07066 * 89.99789 * 3 2 1 12 12 C 1.47076 * 127.14473 * 0.02772 * 11 3 2 13 13 O 1.21645 * 120.00245 * 89.99841 * 12 11 3 14 14 N 1.34777 * 119.99757 * 269.99748 * 12 11 3 15 15 C 1.47422 * 125.65000 * 359.96021 * 14 12 11 16 16 C 1.54917 * 104.83237 * 204.16293 * 15 14 12 17 17 C 1.55155 * 101.58189 * 322.99082 * 16 15 14 18 18 H 1.09006 * 110.86995 * 277.07139 * 17 16 15 19 19 N 1.46490 * 110.72364 * 153.86509 * 17 16 15 20 20 C 1.36935 * 120.00121 * 91.47139 * 19 17 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.47023 * 125.64727 * 179.97438 * 14 12 11 29 29 H 1.09005 * 109.46573 * 300.00013 * 1 2 3 30 30 H 1.09001 * 109.47015 * 59.99271 * 1 2 3 31 31 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47030 * 239.99436 * 2 1 3 33 33 H 1.09007 * 109.47138 * 120.00296 * 2 1 3 34 34 H 1.07996 * 120.01033 * 0.02562 * 6 5 4 35 35 H 1.07993 * 119.67264 * 179.97438 * 7 6 5 36 36 H 1.07995 * 119.89778 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.18499 * 180.02562 * 9 8 7 38 38 H 1.09003 * 110.36401 * 322.99515 * 15 14 12 39 39 H 1.08999 * 110.37131 * 85.21682 * 15 14 12 40 40 H 1.08996 * 111.00481 * 204.91038 * 16 15 14 41 41 H 1.09004 * 111.00233 * 81.06185 * 16 15 14 42 42 H 0.97000 * 120.00577 * 271.47738 * 19 17 16 43 43 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 44 44 H 1.08999 * 109.88084 * 59.48936 * 28 14 12 45 45 H 1.09002 * 110.01437 * 298.39810 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2882 2.1458 -1.0951 5 6 2.7248 3.3816 -0.7750 6 6 3.1125 4.4784 -1.5351 7 6 3.5216 5.6380 -0.9122 8 6 3.5509 5.7248 0.4717 9 6 3.1690 4.6476 1.2422 10 6 2.7488 3.4744 0.6241 11 6 2.2930 2.1578 1.1135 12 6 2.1437 1.7341 2.5140 13 8 3.0753 1.2080 3.0929 14 7 0.9747 1.9287 3.1559 15 6 -0.2297 2.5519 2.5777 16 6 -1.0168 3.0983 3.7950 17 6 -0.7579 1.9946 4.8542 18 1 -1.4490 1.1617 4.7241 19 7 -0.8587 2.5425 6.2090 20 6 -2.0572 2.5159 6.8709 21 1 -2.9280 2.0907 6.3942 22 6 -2.1530 3.0356 8.1546 23 7 -1.0918 3.5543 8.7353 24 14 -3.7877 2.9987 9.0577 25 1 -3.6251 3.6107 10.4009 26 1 -4.7978 3.7649 8.2842 27 1 -4.2400 1.5921 9.2055 28 6 0.6896 1.5550 4.5489 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0925 4.4225 -2.6134 35 1 3.8223 6.4873 -1.5076 36 1 3.8731 6.6394 0.9470 37 1 3.1915 4.7156 2.3198 38 1 0.0486 3.3667 1.9092 39 1 -0.8219 1.8091 2.0433 40 1 -2.0797 3.1805 3.5680 41 1 -0.6136 4.0566 4.1227 42 1 -0.0766 2.9241 6.6374 43 1 -0.2428 3.5731 8.2665 44 1 1.3811 2.0661 5.2188 45 1 0.7834 0.4761 4.6724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019827137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:59 Heat of formation + Delta-G solvation = -11.216394 kcal Electronic energy + Delta-G solvation = -27975.429276 eV Core-core repulsion = 24151.682603 eV Total energy + Delta-G solvation = -3823.746672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.75370 -41.09963 -38.98852 -38.85852 -36.31568 -35.42902 -33.66145 -33.11662 -31.49072 -31.06677 -29.97010 -29.22693 -26.04517 -25.33703 -24.84627 -23.92467 -23.28076 -22.17110 -21.81115 -20.39204 -19.58320 -18.92378 -18.16539 -17.83647 -17.25074 -17.12224 -16.80197 -16.61339 -16.04394 -15.79726 -15.47027 -15.22572 -15.11175 -14.93777 -14.75837 -14.39732 -14.17716 -13.87954 -13.65628 -13.46960 -13.38520 -13.21409 -12.97309 -12.79745 -12.58965 -12.52448 -12.44498 -12.18250 -11.98080 -11.88857 -11.79894 -11.50058 -11.28052 -11.11549 -10.94982 -9.91149 -9.72799 -9.27227 -9.18872 -8.40114 -5.36707 -0.26086 0.23707 0.89220 1.19016 1.39533 1.60398 1.70340 1.81944 1.86291 2.62813 2.72023 3.15306 3.20679 3.38357 3.53060 3.61394 3.75168 3.86069 3.88625 3.94630 4.05156 4.11504 4.13648 4.17580 4.21099 4.29468 4.32330 4.41292 4.49361 4.52686 4.67329 4.75146 4.83545 4.88985 4.93879 4.99203 5.03008 5.08897 5.14597 5.24278 5.28816 5.31300 5.41066 5.56685 5.59749 5.99404 6.25146 6.46167 6.82733 7.03152 7.91977 8.05184 9.10975 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003024 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.093468 B = 9256.958358 C =10057.201005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C 0.102 3.898 4 O -0.180 6.180 5 C 0.033 3.967 6 C -0.099 4.099 7 C -0.086 4.086 8 C -0.121 4.121 9 C -0.102 4.102 10 C -0.121 4.121 11 C -0.248 4.248 12 C 0.608 3.392 13 O -0.580 6.580 14 N -0.597 5.597 15 C 0.110 3.890 16 C -0.142 4.142 17 C 0.175 3.825 18 H 0.078 0.922 19 N -0.741 5.741 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.104 4.104 23 N -0.977 5.977 24 Si 1.129 2.871 25 H -0.298 1.298 26 H -0.274 1.274 27 H -0.276 1.276 28 C 0.107 3.893 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.358 0.642 43 H 0.242 0.758 44 H 0.044 0.956 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -0.475 -27.267 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C 0.052 3.948 4 O -0.081 6.081 5 C -0.014 4.014 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.139 4.139 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.252 4.252 12 C 0.397 3.603 13 O -0.460 6.460 14 N -0.329 5.329 15 C -0.012 4.012 16 C -0.183 4.183 17 C 0.065 3.935 18 H 0.096 0.904 19 N -0.382 5.382 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.295 4.295 23 N -0.624 5.624 24 Si 0.953 3.047 25 H -0.224 1.224 26 H -0.200 1.200 27 H -0.202 1.202 28 C -0.016 4.016 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.173 0.827 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.190 0.810 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.015 -0.557 -25.953 26.267 hybrid contribution 1.534 -0.173 -0.334 1.579 sum 5.548 -0.730 -26.286 26.875 Atomic orbital electron populations 1.21885 0.91521 1.04419 1.02889 1.20547 0.98248 0.84715 1.05797 1.23002 0.95136 0.94830 0.81839 1.83781 1.68990 1.22092 1.33244 1.19906 1.02771 0.85876 0.92808 1.20436 1.01154 0.88904 1.01175 1.21426 0.97171 0.97493 0.94274 1.21435 0.99473 0.98386 0.94570 1.20651 0.99241 0.92156 1.00014 1.19658 1.04952 0.93871 0.93795 1.20392 1.15699 0.96360 0.92743 1.17079 0.80637 0.77507 0.85089 1.90784 1.40362 1.45975 1.68895 1.48410 1.12505 1.59016 1.12981 1.22509 0.84706 0.97792 0.96156 1.23357 1.00990 0.99093 0.94867 1.21297 0.92670 0.95057 0.84478 0.90400 1.42558 1.09365 1.72331 1.13986 1.20398 0.89330 1.36612 0.99764 0.90508 1.27252 1.07427 0.98678 0.96171 1.71002 1.00866 1.50213 1.40352 0.82618 0.70520 0.76869 0.74648 1.22405 1.20002 1.20203 1.22130 0.97554 1.00042 0.81919 0.92921 0.90901 0.88973 0.86463 0.89323 0.81814 0.80494 0.82707 0.87310 0.90408 0.88438 0.88866 0.92839 0.80975 0.94733 0.93728 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.06 -0.97 6.25 29.85 0.19 -0.78 16 3 C 0.10 2.45 6.55 25.18 0.16 2.61 16 4 O -0.18 -4.16 10.53 -3.83 -0.04 -4.20 16 5 C 0.03 0.76 7.39 22.93 0.17 0.93 16 6 C -0.10 -1.57 10.06 22.35 0.22 -1.34 16 7 C -0.09 -1.15 10.01 22.28 0.22 -0.92 16 8 C -0.12 -2.15 10.04 22.28 0.22 -1.92 16 9 C -0.10 -2.63 10.09 22.38 0.23 -2.40 16 10 C -0.12 -3.38 6.39 -20.09 -0.13 -3.51 16 11 C -0.25 -7.34 4.95 -18.97 -0.09 -7.44 16 12 C 0.61 21.34 7.23 86.56 0.63 21.97 16 13 O -0.58 -24.95 17.44 -4.17 -0.07 -25.02 16 14 N -0.60 -19.41 3.33 -816.03 -2.71 -22.13 16 15 C 0.11 2.94 6.57 86.86 0.57 3.51 16 16 C -0.14 -4.59 6.77 31.99 0.22 -4.37 16 17 C 0.17 6.67 3.61 46.18 0.17 6.83 16 18 H 0.08 2.86 8.09 -2.38 -0.02 2.84 16 19 N -0.74 -36.64 5.22 -317.34 -1.66 -38.30 16 20 C -0.33 -17.88 9.96 84.03 0.84 -17.05 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.10 -5.95 5.50 84.86 0.47 -5.49 16 23 N -0.98 -61.24 13.70 21.65 0.30 -60.94 16 24 Si 1.13 50.79 29.92 68.60 2.05 52.84 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 28 C 0.11 3.95 6.62 86.73 0.57 4.53 16 29 H 0.05 0.88 5.78 -2.38 -0.01 0.87 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.76 7.86 -2.38 -0.02 1.75 16 34 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.08 2.00 7.69 -2.39 -0.02 1.98 16 39 H 0.10 2.09 5.93 -2.39 -0.01 2.08 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.36 19.08 6.40 -92.71 -0.59 18.48 16 43 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 44 H 0.04 1.86 7.72 -2.39 -0.02 1.84 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -76.16 374.49 3.79 -72.37 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.56 Total: 31.63 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.37 Total: -6.24 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -4.07 Total: -121.37 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.11 Total: -29.23 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -76.16 3.79 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019827137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.150 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds