Wall clock time and date at job start Tue Mar 31 2020 16:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.46247 * 126.95825 * 269.70661 * 3 2 1 5 5 C 1.39708 * 134.18647 * 0.05040 * 4 3 2 6 6 C 1.36621 * 119.70733 * 179.97438 * 5 4 3 7 7 C 1.38840 * 120.44648 * 0.02562 * 6 5 4 8 8 C 1.37805 * 120.74066 * 359.62030 * 7 6 5 9 9 C 1.39026 * 119.85387 * 0.54970 * 8 7 6 10 10 O 1.34712 * 133.24581 * 179.33090 * 9 8 7 11 11 C 1.34943 * 110.86775 * 180.02562 * 10 9 8 12 12 C 1.46981 * 125.13634 * 179.97438 * 11 10 9 13 13 O 1.21650 * 120.00310 * 180.02562 * 12 11 10 14 14 N 1.34777 * 119.99410 * 0.03025 * 12 11 10 15 15 C 1.47425 * 125.65458 * 0.02562 * 14 12 11 16 16 C 1.54904 * 104.83466 * 204.09437 * 15 14 12 17 17 C 1.55151 * 101.58197 * 322.99219 * 16 15 14 18 18 H 1.09002 * 110.71925 * 277.13472 * 17 16 15 19 19 N 1.46498 * 110.72220 * 153.86511 * 17 16 15 20 20 C 1.36941 * 120.00020 * 154.99372 * 19 17 16 21 21 H 1.07998 * 119.99843 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99888 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99673 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99921 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47166 * 60.00256 * 24 22 20 26 26 H 1.48503 * 109.47293 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47263 * 300.00238 * 24 22 20 28 28 C 1.47025 * 125.64368 * 179.71759 * 14 12 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 34 34 H 1.07998 * 120.14630 * 359.93939 * 5 4 3 35 35 H 1.07996 * 119.77901 * 179.97438 * 6 5 4 36 36 H 1.07992 * 119.63288 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.07144 * 179.91476 * 8 7 6 38 38 H 1.09003 * 110.36292 * 322.93352 * 15 14 12 39 39 H 1.08995 * 110.36560 * 85.25341 * 15 14 12 40 40 H 1.09003 * 111.00418 * 81.06195 * 16 15 14 41 41 H 1.08998 * 111.00700 * 204.87392 * 16 15 14 42 42 H 0.96996 * 119.99973 * 335.00029 * 19 17 16 43 43 H 0.97005 * 119.99406 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.88029 * 298.38661 * 28 14 12 45 45 H 1.08998 * 109.88739 * 59.55407 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3311 2.2479 -1.1686 5 6 2.2653 2.0430 -2.5490 6 6 2.6253 3.0488 -3.4007 7 6 3.0561 4.2714 -2.9033 8 6 3.1212 4.4959 -1.5452 9 6 2.7635 3.4863 -0.6589 10 8 2.7352 3.4056 0.6855 11 6 2.3051 2.1906 1.0851 12 6 2.1551 1.7642 2.4837 13 8 1.7585 0.6428 2.7386 14 7 2.4568 2.6159 3.4838 15 6 2.9447 3.9972 3.3184 16 6 3.7044 4.3094 4.6317 17 6 2.8262 3.5782 5.6810 18 1 1.9764 4.1963 5.9707 19 7 3.6215 3.2058 6.8536 20 6 3.0119 3.0331 8.0676 21 1 1.9448 3.1712 8.1606 22 6 3.7655 2.6797 9.1786 23 7 5.0659 2.5110 9.0651 24 14 2.9340 2.4435 10.8345 25 1 1.9206 1.3630 10.7299 26 1 3.9511 2.0721 11.8508 27 1 2.2692 3.7081 11.2395 28 6 2.3479 2.3233 4.9205 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.9318 1.0936 -2.9412 35 1 2.5752 2.8916 -4.4679 36 1 3.3379 5.0572 -3.5884 37 1 3.4593 5.4506 -1.1702 38 1 3.6199 4.0613 2.4650 39 1 2.1068 4.6829 3.1926 40 1 4.7121 3.8944 4.6083 41 1 3.7305 5.3823 4.8224 42 1 4.5798 3.0815 6.7700 43 1 5.5925 2.2644 9.8415 44 1 1.3111 2.1049 5.1767 45 1 2.9817 1.4739 5.1750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019849930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:21 Heat of formation + Delta-G solvation = 7.743871 kcal Electronic energy + Delta-G solvation = -27557.605779 eV Core-core repulsion = 23734.681285 eV Total energy + Delta-G solvation = -3822.924494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.72569 -39.68258 -38.08034 -37.46709 -34.98293 -34.13114 -31.70448 -31.36775 -30.55313 -29.77680 -29.44074 -27.62201 -24.99313 -23.76749 -23.45876 -23.01774 -22.35671 -20.58501 -19.94066 -19.58905 -18.00102 -17.35161 -17.06412 -16.67277 -16.27080 -15.94942 -15.53397 -14.77431 -14.63056 -14.49185 -14.25548 -13.97280 -13.84522 -13.47892 -13.35127 -13.13732 -12.80738 -12.70636 -12.48155 -12.44448 -12.27905 -11.93601 -11.68573 -11.50439 -11.29221 -11.18675 -11.02003 -10.84589 -10.76992 -10.32873 -10.15200 -10.10762 -9.96543 -9.76782 -9.02299 -8.92969 -8.59639 -8.24567 -7.11560 -5.85277 -3.16479 0.38140 1.06329 1.66942 2.32240 3.09571 3.17171 3.40631 3.41140 3.45867 3.46526 4.16058 4.27997 4.52837 4.56671 4.66059 4.72795 4.93954 4.94127 5.06216 5.10860 5.18838 5.25535 5.30405 5.33224 5.43020 5.55582 5.60057 5.66098 5.72688 5.83628 5.89784 5.91369 5.96917 6.06629 6.08722 6.11003 6.17003 6.23534 6.26904 6.29265 6.33574 6.46342 6.60320 6.82939 6.86714 7.59592 7.63193 8.12223 8.32073 9.43930 9.96750 10.31638 11.36593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002630 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.723898 B =10645.631644 C =11585.740010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.060 4.060 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.110 4.110 9 C 0.066 3.934 10 O -0.177 6.177 11 C -0.018 4.018 12 C 0.603 3.397 13 O -0.516 6.516 14 N -0.599 5.599 15 C 0.100 3.900 16 C -0.141 4.141 17 C 0.172 3.828 18 H 0.070 0.930 19 N -0.711 5.711 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.930 5.930 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.082 3.918 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.387 0.613 43 H 0.258 0.742 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 3.063 -26.400 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.089 4.089 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.160 4.160 7 C -0.106 4.106 8 C -0.128 4.128 9 C 0.017 3.983 10 O -0.079 6.079 11 C -0.067 4.067 12 C 0.390 3.610 13 O -0.395 6.395 14 N -0.331 5.331 15 C -0.023 4.023 16 C -0.180 4.180 17 C 0.060 3.940 18 H 0.088 0.912 19 N -0.351 5.351 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.043 4.043 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.384 2.626 -25.882 26.566 hybrid contribution -0.053 -0.169 0.754 0.775 sum -5.436 2.458 -25.128 25.827 Atomic orbital electron populations 1.21637 0.94235 1.01907 1.01856 1.20180 0.96373 0.89589 1.03884 1.21362 1.00730 0.97362 0.89399 1.19810 1.05629 0.94020 0.94272 1.20344 0.97681 0.99489 0.90310 1.20774 1.01719 0.93484 0.99975 1.20987 0.98257 0.97554 0.93756 1.20005 1.03923 0.97719 0.91175 1.19813 1.00754 0.96120 0.81588 1.84193 1.70645 1.32644 1.20407 1.21897 1.05909 0.84114 0.94817 1.16333 0.79163 0.84430 0.81087 1.90844 1.47726 1.18852 1.82064 1.48481 1.63241 1.14061 1.07316 1.22468 0.98298 0.82225 0.99278 1.23106 0.99772 1.01579 0.93517 1.21210 0.94171 0.91582 0.87054 0.91237 1.42369 1.07044 1.82101 1.03542 1.19225 0.92623 1.40431 0.85896 0.90925 1.24784 0.95576 1.01859 0.98253 1.69655 1.04551 1.53536 1.29941 0.86236 0.78171 0.78020 0.83553 1.21075 1.21627 1.21119 1.23387 1.01761 1.02541 0.76632 0.92054 0.93142 0.92265 0.88417 0.91045 0.85406 0.85258 0.84680 0.84739 0.90195 0.91227 0.90475 0.89815 0.77812 0.93254 0.91880 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.06 -0.75 5.86 -27.88 -0.16 -0.92 16 3 C -0.09 -1.14 5.65 -102.27 -0.58 -1.72 16 4 C -0.14 -1.63 6.37 -105.19 -0.67 -2.30 16 5 C -0.06 -0.55 10.06 -39.62 -0.40 -0.95 16 6 C -0.14 -1.04 9.98 -39.94 -0.40 -1.44 16 7 C -0.09 -0.64 10.01 -39.52 -0.40 -1.03 16 8 C -0.11 -1.01 10.07 -39.45 -0.40 -1.40 16 9 C 0.07 0.80 7.41 -38.35 -0.28 0.51 16 10 O -0.18 -2.43 7.69 2.79 0.02 -2.41 16 11 C -0.02 -0.26 6.89 -36.91 -0.25 -0.52 16 12 C 0.60 10.33 7.83 -12.72 -0.10 10.23 16 13 O -0.52 -9.91 14.94 5.23 0.08 -9.84 16 14 N -0.60 -10.02 3.33 -171.94 -0.57 -10.59 16 15 C 0.10 1.40 6.14 -2.53 -0.02 1.39 16 16 C -0.14 -2.16 6.72 -24.59 -0.17 -2.32 16 17 C 0.17 3.27 3.60 -66.09 -0.24 3.04 16 18 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 19 N -0.71 -17.16 5.15 -51.65 -0.27 -17.43 16 20 C -0.25 -6.76 9.96 -15.06 -0.15 -6.91 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.08 1.54 6.63 -3.06 -0.02 1.52 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.35 6.37 -51.93 -0.33 1.02 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.08 1.05 6.18 -51.93 -0.32 0.73 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.39 9.96 7.76 -40.82 -0.32 9.64 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.38 373.41 -9.78 -41.16 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.42 Total: 7.56 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.96 Total: -4.29 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.11 Total: -54.82 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.10 Total: -12.24 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.38 -9.78 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019849930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.905 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds