Wall clock time and date at job start Tue Mar 31 2020 16:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.46247 * 126.95825 * 269.70661 * 3 2 1 5 5 C 1.39708 * 134.18647 * 0.05040 * 4 3 2 6 6 C 1.36621 * 119.70733 * 179.97438 * 5 4 3 7 7 C 1.38840 * 120.44648 * 0.02562 * 6 5 4 8 8 C 1.37805 * 120.74066 * 359.62030 * 7 6 5 9 9 C 1.39026 * 119.85387 * 0.54970 * 8 7 6 10 10 O 1.34712 * 133.24581 * 179.33090 * 9 8 7 11 11 C 1.34943 * 110.86775 * 180.02562 * 10 9 8 12 12 C 1.46981 * 125.13634 * 179.97438 * 11 10 9 13 13 O 1.21650 * 120.00310 * 180.02562 * 12 11 10 14 14 N 1.34777 * 119.99410 * 0.03025 * 12 11 10 15 15 C 1.47425 * 125.65458 * 0.02562 * 14 12 11 16 16 C 1.54904 * 104.83466 * 204.09437 * 15 14 12 17 17 C 1.55151 * 101.58197 * 322.99219 * 16 15 14 18 18 H 1.09002 * 110.71925 * 277.13472 * 17 16 15 19 19 N 1.46498 * 110.72220 * 153.86511 * 17 16 15 20 20 C 1.36941 * 120.00020 * 154.99372 * 19 17 16 21 21 H 1.07998 * 119.99843 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99888 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99673 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99921 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47166 * 60.00256 * 24 22 20 26 26 H 1.48503 * 109.47293 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47263 * 300.00238 * 24 22 20 28 28 C 1.47025 * 125.64368 * 179.71759 * 14 12 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 34 34 H 1.07998 * 120.14630 * 359.93939 * 5 4 3 35 35 H 1.07996 * 119.77901 * 179.97438 * 6 5 4 36 36 H 1.07992 * 119.63288 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.07144 * 179.91476 * 8 7 6 38 38 H 1.09003 * 110.36292 * 322.93352 * 15 14 12 39 39 H 1.08995 * 110.36560 * 85.25341 * 15 14 12 40 40 H 1.09003 * 111.00418 * 81.06195 * 16 15 14 41 41 H 1.08998 * 111.00700 * 204.87392 * 16 15 14 42 42 H 0.96996 * 119.99973 * 335.00029 * 19 17 16 43 43 H 0.97005 * 119.99406 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.88029 * 298.38661 * 28 14 12 45 45 H 1.08998 * 109.88739 * 59.55407 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3311 2.2479 -1.1686 5 6 2.2653 2.0430 -2.5490 6 6 2.6253 3.0488 -3.4007 7 6 3.0561 4.2714 -2.9033 8 6 3.1212 4.4959 -1.5452 9 6 2.7635 3.4863 -0.6589 10 8 2.7352 3.4056 0.6855 11 6 2.3051 2.1906 1.0851 12 6 2.1551 1.7642 2.4837 13 8 1.7585 0.6428 2.7386 14 7 2.4568 2.6159 3.4838 15 6 2.9447 3.9972 3.3184 16 6 3.7044 4.3094 4.6317 17 6 2.8262 3.5782 5.6810 18 1 1.9764 4.1963 5.9707 19 7 3.6215 3.2058 6.8536 20 6 3.0119 3.0331 8.0676 21 1 1.9448 3.1712 8.1606 22 6 3.7655 2.6797 9.1786 23 7 5.0659 2.5110 9.0651 24 14 2.9340 2.4435 10.8345 25 1 1.9206 1.3630 10.7299 26 1 3.9511 2.0721 11.8508 27 1 2.2692 3.7081 11.2395 28 6 2.3479 2.3233 4.9205 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.9318 1.0936 -2.9412 35 1 2.5752 2.8916 -4.4679 36 1 3.3379 5.0572 -3.5884 37 1 3.4593 5.4506 -1.1702 38 1 3.6199 4.0613 2.4650 39 1 2.1068 4.6829 3.1926 40 1 4.7121 3.8944 4.6083 41 1 3.7305 5.3823 4.8224 42 1 4.5798 3.0815 6.7700 43 1 5.5925 2.2644 9.8415 44 1 1.3111 2.1049 5.1767 45 1 2.9817 1.4739 5.1750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019849930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:20 Heat of formation + Delta-G solvation = -10.240495 kcal Electronic energy + Delta-G solvation = -27558.385639 eV Core-core repulsion = 23734.681285 eV Total energy + Delta-G solvation = -3823.704354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.62726 -41.00717 -38.92253 -38.77321 -36.15045 -35.73621 -33.45188 -32.15291 -31.42543 -31.18999 -30.51581 -29.09748 -26.41967 -25.15751 -24.48654 -24.02354 -23.42136 -21.84884 -21.12796 -20.69624 -19.42075 -18.91689 -18.02223 -17.82088 -17.27999 -17.08638 -16.86571 -16.37253 -15.69476 -15.43364 -15.37355 -15.26012 -15.01981 -14.85931 -14.65741 -14.28936 -14.15835 -13.76179 -13.57944 -13.47345 -13.24486 -13.16689 -12.90374 -12.89646 -12.61862 -12.50351 -12.39902 -12.18945 -12.13804 -11.87879 -11.78731 -11.62467 -11.24341 -11.00965 -10.98417 -9.90308 -9.65380 -9.19854 -9.12817 -7.98260 -5.29112 -0.50582 0.35836 0.76239 1.31556 1.47513 1.50365 1.56065 1.88532 1.94038 2.54445 2.72761 3.16464 3.33759 3.47624 3.58677 3.65185 3.82183 3.85931 3.98207 4.10806 4.26160 4.27478 4.30236 4.34208 4.37245 4.40389 4.46662 4.49436 4.60613 4.64484 4.82157 4.88079 4.92890 4.97657 5.02549 5.12003 5.14302 5.19354 5.25267 5.29648 5.35285 5.39995 5.49361 5.50072 5.60463 6.03453 6.22580 6.29665 6.79984 7.29756 8.00260 8.24412 9.24452 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002630 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.723898 B =10645.631644 C =11585.740010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.075 4.075 4 C -0.160 4.160 5 C -0.066 4.066 6 C -0.135 4.135 7 C -0.072 4.072 8 C -0.123 4.123 9 C 0.045 3.955 10 O -0.186 6.186 11 C -0.052 4.052 12 C 0.599 3.401 13 O -0.550 6.550 14 N -0.604 5.604 15 C 0.108 3.892 16 C -0.128 4.128 17 C 0.168 3.832 18 H 0.078 0.922 19 N -0.724 5.724 20 C -0.249 4.249 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.973 3.027 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.273 1.273 28 C 0.094 3.906 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 4.631 -29.963 30.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.079 4.079 4 C -0.161 4.161 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.090 4.090 8 C -0.141 4.141 9 C -0.003 4.003 10 O -0.089 6.089 11 C -0.101 4.101 12 C 0.389 3.611 13 O -0.431 6.431 14 N -0.335 5.335 15 C -0.014 4.014 16 C -0.167 4.167 17 C 0.057 3.943 18 H 0.096 0.904 19 N -0.362 5.362 20 C -0.381 4.381 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.802 3.198 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.199 1.199 28 C -0.031 4.031 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.170 0.830 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.209 0.791 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.211 4.229 -29.494 30.436 hybrid contribution 0.174 -0.624 1.564 1.693 sum -6.036 3.605 -27.930 28.802 Atomic orbital electron populations 1.21586 0.93374 1.02747 1.01284 1.20229 0.97071 0.89054 1.03832 1.21700 0.98634 0.97619 0.89922 1.19979 1.07228 0.93759 0.95116 1.20692 0.97468 1.01065 0.89153 1.21255 0.99721 0.92743 1.01526 1.21526 0.95685 0.98387 0.93359 1.20413 1.04155 0.97869 0.91664 1.20363 1.01572 0.97339 0.81047 1.84098 1.71225 1.31895 1.21635 1.21381 1.09454 0.85605 0.93706 1.16655 0.78361 0.83986 0.82127 1.90808 1.49174 1.20144 1.82964 1.48497 1.63567 1.15243 1.06200 1.22566 0.99039 0.80950 0.98797 1.23026 0.98562 1.02436 0.92638 1.21395 0.94717 0.91778 0.86382 0.90367 1.42511 1.06878 1.82428 1.04389 1.19630 0.93013 1.38507 0.86905 0.90217 1.25585 0.96208 1.02825 1.01756 1.69810 1.05908 1.55560 1.30423 0.85221 0.77000 0.78221 0.79367 1.20706 1.22240 1.19923 1.22953 1.00477 1.01208 0.78510 0.90540 0.91541 0.94861 0.91017 0.88422 0.83500 0.81808 0.81012 0.83048 0.88984 0.89112 0.91456 0.87356 0.79130 0.93901 0.92549 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.89 71.98 0.71 -2.14 16 2 C -0.06 -1.55 5.86 29.85 0.18 -1.37 16 3 C -0.08 -2.03 5.65 -18.34 -0.10 -2.13 16 4 C -0.16 -3.58 6.37 -20.23 -0.13 -3.71 16 5 C -0.07 -0.99 10.06 22.25 0.22 -0.76 16 6 C -0.13 -1.36 9.98 22.04 0.22 -1.14 16 7 C -0.07 -0.71 10.01 22.31 0.22 -0.49 16 8 C -0.12 -1.89 10.07 22.36 0.23 -1.66 16 9 C 0.04 1.02 7.41 23.07 0.17 1.19 16 10 O -0.19 -5.07 7.69 -12.93 -0.10 -5.17 16 11 C -0.05 -1.61 6.89 24.00 0.17 -1.44 16 12 C 0.60 21.65 7.83 86.53 0.68 22.33 16 13 O -0.55 -22.62 14.94 -4.19 -0.06 -22.69 16 14 N -0.60 -20.90 3.33 -816.14 -2.71 -23.61 16 15 C 0.11 2.97 6.14 86.85 0.53 3.50 16 16 C -0.13 -3.86 6.72 31.98 0.21 -3.65 16 17 C 0.17 6.47 3.60 46.18 0.17 6.64 16 18 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 19 N -0.72 -35.86 5.15 -317.31 -1.64 -37.50 16 20 C -0.25 -13.61 9.96 84.03 0.84 -12.78 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 23 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 24 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.09 3.72 6.63 86.73 0.58 4.30 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 2.11 6.37 -2.39 -0.02 2.09 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 37 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.09 2.36 6.18 -2.39 -0.01 2.34 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.18 8.01 -2.39 -0.02 2.16 16 41 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.38 20.09 7.76 -92.71 -0.72 19.37 16 43 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 44 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -71.68 373.41 3.44 -68.23 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.29 Total: 28.27 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.35 Total: 3.09 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -4.07 Total: -119.76 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.16 Total: -27.85 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.68 3.44 -68.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019849930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.993 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds