Wall clock time and date at job start Tue Mar 31 2020 16:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47038 * 2 1 4 4 C 1.38687 * 119.89845 * 90.00203 * 3 2 1 5 5 C 1.37839 * 120.65676 * 180.02562 * 4 3 2 6 6 C 1.38975 * 119.96869 * 359.97438 * 5 4 3 7 7 O 1.34904 * 133.11390 * 180.02562 * 6 5 4 8 8 C 1.33804 * 111.35278 * 180.02562 * 7 6 5 9 9 C 1.36056 * 109.84924 * 359.97438 * 8 7 6 10 10 C 1.47074 * 127.14046 * 180.02562 * 9 8 7 11 11 O 1.21654 * 119.99978 * 180.02562 * 10 9 8 12 12 N 1.34782 * 120.00019 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99814 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85001 * 23.80776 * 13 12 10 15 15 C 1.53790 * 113.61096 * 155.00065 * 13 12 10 16 16 C 1.53780 * 87.08032 * 89.11748 * 15 13 12 17 17 H 1.08997 * 113.61166 * 270.80120 * 16 15 13 18 18 N 1.46499 * 113.61180 * 139.97918 * 16 15 13 19 19 C 1.36932 * 119.99549 * 156.53024 * 18 16 15 20 20 H 1.08003 * 120.00354 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00011 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00154 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53785 * 87.17414 * 25.39089 * 16 15 13 28 28 C 1.40228 * 119.25713 * 0.30239 * 6 5 4 29 29 C 1.37840 * 119.89722 * 270.02105 * 3 2 1 30 30 H 1.08996 * 109.47394 * 59.99924 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46932 * 299.99832 * 1 2 3 33 33 H 1.09000 * 109.46932 * 240.00167 * 2 1 3 34 34 H 1.09004 * 109.47068 * 120.00066 * 2 1 3 35 35 H 1.08004 * 119.67169 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.01459 * 179.97438 * 5 4 3 37 37 H 1.07998 * 125.07996 * 179.97438 * 8 7 6 38 38 H 0.96997 * 119.99613 * 0.02562 * 12 10 9 39 39 H 1.08996 * 113.61028 * 334.56383 * 15 13 12 40 40 H 1.09004 * 113.68746 * 203.67785 * 15 13 12 41 41 H 0.96993 * 120.00302 * 336.52988 * 18 16 15 42 42 H 0.96998 * 119.99442 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.61712 * 89.15338 * 27 16 15 44 44 H 1.08996 * 113.61627 * 220.06619 * 27 16 15 45 45 H 1.07995 * 120.18803 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0726 1.2023 5 6 2.7217 3.3723 1.2205 6 6 2.9584 4.0417 0.0259 7 8 3.3975 5.2840 -0.2635 8 6 3.4665 5.4808 -1.5852 9 6 3.0693 4.3569 -2.2410 10 6 2.9983 4.1561 -3.6962 11 8 2.6211 3.0903 -4.1455 12 7 3.3511 5.1529 -4.5320 13 6 3.2809 4.9526 -5.9816 14 1 2.5752 4.1727 -6.2674 15 6 3.1113 6.2583 -6.7762 16 6 4.6462 6.3456 -6.8090 17 1 5.0716 6.8765 -5.9574 18 7 5.1804 6.8079 -8.0924 19 6 6.4195 7.3880 -8.1491 20 1 7.0032 7.5043 -7.2478 21 6 6.9260 7.8256 -9.3652 22 7 8.1173 8.3827 -9.4198 23 14 5.9169 7.6238 -10.9241 24 1 6.2278 6.3130 -11.5489 25 1 6.2492 8.7160 -11.8738 26 1 4.4713 7.6820 -10.5891 27 6 4.6606 4.8159 -6.6509 28 6 2.7189 3.3824 -1.1883 29 6 2.2609 2.0688 -1.1950 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0801 1.5570 2.1336 36 1 2.8973 3.8700 2.1627 37 1 3.7892 6.3953 -2.0605 38 1 3.6521 6.0025 -4.1737 39 1 2.6404 7.0587 -6.2055 40 1 2.6608 6.1176 -7.7588 41 1 4.6565 6.7031 -8.9018 42 1 8.4712 8.6881 -10.2697 43 1 4.6346 4.2787 -7.5989 44 1 5.4387 4.4537 -5.9791 45 1 2.0807 1.5612 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020161784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:33 Heat of formation + Delta-G solvation = 21.378353 kcal Electronic energy + Delta-G solvation = -26562.510955 eV Core-core repulsion = 22740.177697 eV Total energy + Delta-G solvation = -3822.333258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.87376 -39.92943 -38.74020 -37.98838 -34.23176 -34.00329 -33.32041 -32.41757 -30.58587 -29.73480 -29.26872 -25.29111 -25.15897 -24.50994 -23.52782 -23.17732 -21.86642 -21.34378 -20.33908 -19.25505 -18.25805 -17.59010 -17.41024 -16.58522 -16.16047 -16.00032 -15.53314 -15.03993 -14.85062 -14.67800 -14.50060 -14.27714 -13.95283 -13.77924 -13.54893 -13.23749 -13.07792 -12.82832 -12.68898 -12.27507 -12.23334 -12.04639 -11.93712 -11.63166 -11.38085 -11.10972 -11.04202 -10.91839 -10.47768 -10.40545 -10.24538 -10.05835 -9.93417 -9.61689 -9.01609 -8.90509 -8.80179 -8.51476 -7.32629 -5.83051 -3.19153 0.47501 0.97785 1.50612 2.32745 3.02926 3.09355 3.33644 3.36714 3.42113 3.46498 4.03912 4.27269 4.41328 4.51745 4.53766 4.71387 4.83307 4.94660 4.95877 4.99109 5.04752 5.05612 5.12971 5.22193 5.32689 5.37344 5.46797 5.55236 5.62715 5.65214 5.71191 5.84207 5.86584 5.89266 5.91659 6.04567 6.07300 6.14157 6.25836 6.30956 6.37142 6.47525 6.53788 6.75023 6.90580 7.46871 7.92173 8.16515 8.36374 9.13784 9.86410 10.05796 11.34977 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.002174 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.459449 B =12877.064882 C =13575.245005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.103 4.103 6 C 0.041 3.959 7 O -0.182 6.182 8 C 0.068 3.932 9 C -0.226 4.226 10 C 0.589 3.411 11 O -0.535 6.535 12 N -0.703 5.703 13 C 0.118 3.882 14 H 0.099 0.901 15 C -0.162 4.162 16 C 0.172 3.828 17 H 0.081 0.919 18 N -0.737 5.737 19 C -0.250 4.250 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.176 4.176 28 C -0.088 4.088 29 C -0.058 4.058 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.218 0.782 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 -11.812 22.999 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.005 4.005 7 O -0.082 6.082 8 C -0.001 4.001 9 C -0.230 4.230 10 C 0.376 3.624 11 O -0.413 6.413 12 N -0.353 5.353 13 C 0.013 3.987 14 H 0.117 0.883 15 C -0.201 4.201 16 C 0.061 3.939 17 H 0.099 0.901 18 N -0.376 5.376 19 C -0.380 4.380 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.218 4.218 28 C -0.089 4.089 29 C -0.076 4.076 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.235 0.765 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.451 -12.265 22.899 30.225 hybrid contribution -0.320 0.454 -1.240 1.359 sum -15.771 -11.810 21.659 29.280 Atomic orbital electron populations 1.21766 0.94626 1.01811 1.02327 1.20515 0.96247 0.92031 1.03146 1.19838 1.00523 0.96880 0.92447 1.20806 0.98832 0.93200 0.98060 1.19894 1.03331 0.94359 0.94524 1.19575 1.01995 0.83364 0.95602 1.83850 1.69368 1.30470 1.24481 1.24533 0.96370 0.99206 0.79961 1.21023 1.12696 0.95344 0.93964 1.17052 0.77175 0.84016 0.84107 1.90775 1.47157 1.25671 1.77701 1.45526 1.67396 1.15923 1.06482 1.21848 0.99613 0.99122 0.78109 0.88288 1.23869 0.99983 0.96072 1.00221 1.21612 0.90372 0.91876 0.90089 0.90140 1.42740 1.18852 1.72279 1.03752 1.19111 0.91737 1.31411 0.95733 0.89173 1.24710 0.96555 1.00450 0.97386 1.69703 1.17101 1.45768 1.25308 0.86543 0.79882 0.77609 0.84435 1.20996 1.21686 1.20282 1.24312 0.95349 1.01760 1.00371 1.19384 1.03366 0.95329 0.90847 1.20564 0.96417 0.91994 0.98610 0.92375 0.92296 0.92582 0.90699 0.90840 0.84720 0.84834 0.76530 0.76754 0.91352 0.89108 0.80364 0.92983 0.89543 0.91875 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.57 16 2 C -0.08 -0.57 6.06 -27.88 -0.17 -0.73 16 3 C -0.10 -0.88 5.13 -104.60 -0.54 -1.41 16 4 C -0.09 -0.71 9.66 -39.56 -0.38 -1.09 16 5 C -0.10 -0.89 10.06 -39.45 -0.40 -1.28 16 6 C 0.04 0.45 7.39 -38.56 -0.28 0.16 16 7 O -0.18 -1.87 10.53 5.35 0.06 -1.82 16 8 C 0.07 0.61 11.52 29.95 0.34 0.95 16 9 C -0.23 -2.71 6.31 -103.25 -0.65 -3.36 16 10 C 0.59 8.19 7.80 -12.67 -0.10 8.10 16 11 O -0.54 -9.26 15.88 5.23 0.08 -9.17 16 12 N -0.70 -8.53 5.25 -54.10 -0.28 -8.81 16 13 C 0.12 1.65 4.33 -67.02 -0.29 1.36 16 14 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 15 C -0.16 -2.28 7.58 -25.91 -0.20 -2.48 16 16 C 0.17 3.04 4.34 -67.12 -0.29 2.75 16 17 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 18 N -0.74 -16.70 5.21 -52.64 -0.27 -16.97 16 19 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 20 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 23 Si 0.89 21.71 27.73 -169.99 -4.71 17.00 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 27 C -0.18 -2.88 7.69 -25.82 -0.20 -3.08 16 28 C -0.09 -1.09 6.29 -104.98 -0.66 -1.75 16 29 C -0.06 -0.67 9.53 -39.40 -0.38 -1.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.22 1.01 7.41 -52.49 -0.39 0.62 16 38 H 0.40 3.71 7.62 -40.82 -0.31 3.40 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 41 H 0.36 8.11 5.77 -40.82 -0.24 7.87 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.14 1.71 7.54 -52.49 -0.40 1.31 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -34.51 378.37 -9.10 -43.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.37 Total: 8.97 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.07 Total: -10.46 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.22 Total: -53.84 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.14 Total: -10.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.51 -9.10 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020161784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.994 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds