Wall clock time and date at job start Tue Mar 31 2020 16:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47038 * 2 1 4 4 C 1.38687 * 119.89845 * 90.00203 * 3 2 1 5 5 C 1.37839 * 120.65676 * 180.02562 * 4 3 2 6 6 C 1.38975 * 119.96869 * 359.97438 * 5 4 3 7 7 O 1.34904 * 133.11390 * 180.02562 * 6 5 4 8 8 C 1.33804 * 111.35278 * 180.02562 * 7 6 5 9 9 C 1.36056 * 109.84924 * 359.97438 * 8 7 6 10 10 C 1.47074 * 127.14046 * 180.02562 * 9 8 7 11 11 O 1.21654 * 119.99978 * 180.02562 * 10 9 8 12 12 N 1.34782 * 120.00019 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99814 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.85001 * 23.80776 * 13 12 10 15 15 C 1.53790 * 113.61096 * 155.00065 * 13 12 10 16 16 C 1.53780 * 87.08032 * 89.11748 * 15 13 12 17 17 H 1.08997 * 113.61166 * 270.80120 * 16 15 13 18 18 N 1.46499 * 113.61180 * 139.97918 * 16 15 13 19 19 C 1.36932 * 119.99549 * 156.53024 * 18 16 15 20 20 H 1.08003 * 120.00354 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00011 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00154 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53785 * 87.17414 * 25.39089 * 16 15 13 28 28 C 1.40228 * 119.25713 * 0.30239 * 6 5 4 29 29 C 1.37840 * 119.89722 * 270.02105 * 3 2 1 30 30 H 1.08996 * 109.47394 * 59.99924 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46932 * 299.99832 * 1 2 3 33 33 H 1.09000 * 109.46932 * 240.00167 * 2 1 3 34 34 H 1.09004 * 109.47068 * 120.00066 * 2 1 3 35 35 H 1.08004 * 119.67169 * 359.97438 * 4 3 2 36 36 H 1.07995 * 120.01459 * 179.97438 * 5 4 3 37 37 H 1.07998 * 125.07996 * 179.97438 * 8 7 6 38 38 H 0.96997 * 119.99613 * 0.02562 * 12 10 9 39 39 H 1.08996 * 113.61028 * 334.56383 * 15 13 12 40 40 H 1.09004 * 113.68746 * 203.67785 * 15 13 12 41 41 H 0.96993 * 120.00302 * 336.52988 * 18 16 15 42 42 H 0.96998 * 119.99442 * 179.97438 * 22 21 19 43 43 H 1.08995 * 113.61712 * 89.15338 * 27 16 15 44 44 H 1.08996 * 113.61627 * 220.06619 * 27 16 15 45 45 H 1.07995 * 120.18803 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2628 2.0726 1.2023 5 6 2.7217 3.3723 1.2205 6 6 2.9584 4.0417 0.0259 7 8 3.3975 5.2840 -0.2635 8 6 3.4665 5.4808 -1.5852 9 6 3.0693 4.3569 -2.2410 10 6 2.9983 4.1561 -3.6962 11 8 2.6211 3.0903 -4.1455 12 7 3.3511 5.1529 -4.5320 13 6 3.2809 4.9526 -5.9816 14 1 2.5752 4.1727 -6.2674 15 6 3.1113 6.2583 -6.7762 16 6 4.6462 6.3456 -6.8090 17 1 5.0716 6.8765 -5.9574 18 7 5.1804 6.8079 -8.0924 19 6 6.4195 7.3880 -8.1491 20 1 7.0032 7.5043 -7.2478 21 6 6.9260 7.8256 -9.3652 22 7 8.1173 8.3827 -9.4198 23 14 5.9169 7.6238 -10.9241 24 1 6.2278 6.3130 -11.5489 25 1 6.2492 8.7160 -11.8738 26 1 4.4713 7.6820 -10.5891 27 6 4.6606 4.8159 -6.6509 28 6 2.7189 3.3824 -1.1883 29 6 2.2609 2.0688 -1.1950 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0801 1.5570 2.1336 36 1 2.8973 3.8700 2.1627 37 1 3.7892 6.3953 -2.0605 38 1 3.6521 6.0025 -4.1737 39 1 2.6404 7.0587 -6.2055 40 1 2.6608 6.1176 -7.7588 41 1 4.6565 6.7031 -8.9018 42 1 8.4712 8.6881 -10.2697 43 1 4.6346 4.2787 -7.5989 44 1 5.4387 4.4537 -5.9791 45 1 2.0807 1.5612 -2.1310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020161784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:32 Heat of formation + Delta-G solvation = -0.961532 kcal Electronic energy + Delta-G solvation = -26563.479686 eV Core-core repulsion = 22740.177697 eV Total energy + Delta-G solvation = -3823.301988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.64409 -41.10837 -39.44403 -39.25257 -35.87421 -34.65345 -34.48671 -33.61323 -32.37569 -30.56110 -29.95184 -26.67014 -26.53278 -25.34393 -24.67880 -23.90871 -23.36890 -22.03367 -21.31834 -20.68583 -19.48797 -19.06475 -18.20260 -17.39931 -17.29838 -16.86982 -16.65442 -16.30820 -16.19351 -15.72257 -15.52295 -15.34453 -15.03091 -14.70011 -14.41707 -14.31302 -14.19010 -14.09548 -13.77901 -13.64450 -13.44261 -13.35521 -12.89932 -12.59464 -12.57429 -12.27693 -12.05362 -11.95268 -11.87244 -11.82426 -11.73157 -11.27976 -11.23440 -11.17424 -10.89201 -10.12392 -9.52011 -9.30764 -9.25930 -8.02122 -5.35199 -0.27298 0.23478 0.67845 1.38890 1.42207 1.49240 1.60945 2.01380 2.14943 2.49027 2.67274 3.27902 3.34386 3.44735 3.61078 3.71303 3.75587 3.79181 3.84493 4.09570 4.17746 4.23605 4.26413 4.28519 4.36220 4.50398 4.51319 4.66704 4.74869 4.79889 4.87771 4.91780 5.00532 5.08485 5.09656 5.14582 5.15827 5.18687 5.20934 5.29630 5.37334 5.56258 5.60488 5.63328 5.77829 6.01517 6.22889 6.48829 7.08332 7.14249 7.85435 8.03538 9.19114 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.002174 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.459449 B =12877.064882 C =13575.245005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.091 4.091 4 C -0.089 4.089 5 C -0.097 4.097 6 C 0.021 3.979 7 O -0.182 6.182 8 C 0.101 3.899 9 C -0.266 4.266 10 C 0.590 3.410 11 O -0.579 6.579 12 N -0.692 5.692 13 C 0.133 3.867 14 H 0.094 0.906 15 C -0.140 4.140 16 C 0.155 3.845 17 H 0.084 0.916 18 N -0.741 5.741 19 C -0.231 4.231 20 H 0.060 0.940 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.954 3.046 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.247 1.247 27 C -0.176 4.176 28 C -0.115 4.115 29 C -0.090 4.090 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.261 0.739 38 H 0.414 0.586 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.367 0.633 42 H 0.257 0.743 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.534 -11.775 25.012 32.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.025 4.025 7 O -0.081 6.081 8 C 0.032 3.968 9 C -0.271 4.271 10 C 0.380 3.620 11 O -0.460 6.460 12 N -0.343 5.343 13 C 0.027 3.973 14 H 0.112 0.888 15 C -0.179 4.179 16 C 0.046 3.954 17 H 0.102 0.898 18 N -0.382 5.382 19 C -0.363 4.363 20 H 0.078 0.922 21 C -0.259 4.259 22 N -0.634 5.634 23 Si 0.781 3.219 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.171 1.171 27 C -0.217 4.217 28 C -0.116 4.116 29 C -0.109 4.109 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.189 0.811 36 H 0.180 0.820 37 H 0.277 0.723 38 H 0.251 0.749 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.201 0.799 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.538 -12.233 24.972 32.877 hybrid contribution 0.342 0.382 -1.686 1.762 sum -17.196 -11.851 23.287 31.280 Atomic orbital electron populations 1.21745 0.94114 1.02565 1.01846 1.20587 0.96612 0.90873 1.03887 1.20145 0.99126 0.97712 0.92139 1.21226 0.97625 0.93017 0.98764 1.20358 1.01800 0.94540 0.94856 1.19901 1.03109 0.83588 0.95909 1.83867 1.69095 1.30250 1.24902 1.25268 0.92880 0.99283 0.79333 1.20936 1.16131 0.97062 0.92930 1.17336 0.76203 0.83462 0.85039 1.90748 1.49289 1.27427 1.78543 1.45371 1.66937 1.16370 1.05596 1.21594 0.97599 0.99105 0.79007 0.88759 1.23697 0.96688 0.96530 1.00970 1.21968 0.93047 0.92199 0.88167 0.89839 1.42750 1.17411 1.72258 1.05824 1.19101 0.92991 1.29711 0.94457 0.92241 1.25536 0.97896 1.01298 1.01123 1.69885 1.19411 1.48198 1.25934 0.85424 0.79813 0.76971 0.79657 1.20934 1.22470 1.17122 1.24223 0.96780 1.00450 1.00291 1.19687 1.04112 0.95888 0.91907 1.20549 0.98990 0.92500 0.98828 0.94184 0.90942 0.91706 0.91561 0.88482 0.81142 0.81998 0.72323 0.74898 0.88802 0.88404 0.79942 0.93445 0.90239 0.92948 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 71.98 0.71 -0.99 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.09 -1.60 5.13 -19.85 -0.10 -1.70 16 4 C -0.09 -1.17 9.66 22.28 0.22 -0.95 16 5 C -0.10 -1.46 10.06 22.35 0.22 -1.23 16 6 C 0.02 0.43 7.39 22.93 0.17 0.60 16 7 O -0.18 -3.39 10.53 -3.76 -0.04 -3.43 16 8 C 0.10 1.61 11.52 67.31 0.78 2.39 16 9 C -0.27 -6.34 6.31 -18.98 -0.12 -6.45 16 10 C 0.59 16.51 7.80 86.56 0.68 17.18 16 11 O -0.58 -20.91 15.88 -4.20 -0.07 -20.97 16 12 N -0.69 -15.86 5.25 -443.32 -2.33 -18.19 16 13 C 0.13 3.52 4.33 45.58 0.20 3.72 16 14 H 0.09 2.69 7.46 -2.39 -0.02 2.68 16 15 C -0.14 -3.54 7.58 31.12 0.24 -3.31 16 16 C 0.16 5.26 4.34 45.52 0.20 5.46 16 17 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 18 N -0.74 -32.71 5.21 -320.44 -1.67 -34.38 16 19 C -0.23 -12.78 10.45 84.04 0.88 -11.90 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.98 -62.47 13.97 21.65 0.30 -62.17 16 23 Si 0.95 44.74 27.73 68.60 1.90 46.64 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.25 -10.23 6.52 99.48 0.65 -9.59 16 27 C -0.18 -5.65 7.69 31.18 0.24 -5.41 16 28 C -0.11 -2.90 6.29 -20.09 -0.13 -3.02 16 29 C -0.09 -2.22 9.53 22.39 0.21 -2.01 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.26 1.46 7.41 -2.91 -0.02 1.44 16 38 H 0.41 6.70 7.62 -92.71 -0.71 5.99 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 2.43 8.11 -2.39 -0.02 2.41 16 41 H 0.37 15.55 5.77 -92.71 -0.53 15.01 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.11 3.19 7.54 -2.91 -0.02 3.17 16 Total: -1.00 -78.75 378.37 2.86 -75.89 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.28 Total: 28.54 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.03 Total: -11.92 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.70 Total: -114.74 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.11 Total: -24.41 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -78.75 2.86 -75.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020161784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.925 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds